Rorug02G0534000

Protein of unknown function (DUF1666)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002986
Physical Location & Seq
Reverse (-)
66333808 .. 66334653
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0534000.1

Sequence Viewer

Length: 573 bp
ATGTCGTCTGACTCGTTGATGACGATGATGATGCCACCTCGGCGGCAGCAGCATCAAACACAAGCGCTTCCGTCACCGTCGCCGGTGTCGTCTACAGTGCCGGAGAGTGGGACTAACTTTGAGGCCTTGAACTCCAGCGCCAATACTACTCCTACAATTTCACAATCTGATTATTGCGTTTGTGCGATTGATTCTCTTCTTTTCGTATTCAATTTTACCTTTCCTCGTCATCCTGAGGTGAAGTGGGCCCAGAGGGAGGACAAGGTCTTCCTTACCGTGCTTCTGCCCGTTGCCAAGGACGCCAAGGTTAAGCTTGAGCCTGAAGGTGTTTTCATCTTCTCCGCTAGTGCCGGCGCCGGGAATAACCACTATGAGCTGAAACTCGACCTTTTCGATAAGGTTGATGTAGAGGAAAGCAAAATAAGTATTGGAGTGAGGAGTATAGTCTGTATTGTGGAGAAGGCAGAGAAAGTTTGGTGGAGTAAGCTATTGAAAGGAGATGGGAAGACACCGCATTATGTCAAAGTAGATTGGGACAAATGGGTTGACGAAGACGAGGATCCTTGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1666

Protein Analysis

190

Amino Acids

21.33

Weight (kDa)

5.11

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 78 - 154 7.1e-13 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccI GTMKAC 1 cut(s) 92
AciI CCGC 3 cut(s) 43, 342, 512
AclWI GGATC 2 cut(s) 554, 567
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 2 cut(s) 300, 354
AfeI AGCGCT 1 cut(s) 66
AfiI CCNNNNNNNGG 3 cut(s) 107, 256, 357
AgsI TTSAA 3 cut(s) 130, 211, 493
AluBI AGCT 3 cut(s) 313, 376, 487
AluI AGCT 3 cut(s) 313, 376, 487
AlwI GGATC 2 cut(s) 554, 567
Aor51HI AGCGCT 1 cut(s) 66
AoxI GGCC 2 cut(s) 123, 246
ApaI GGGCCC 1 cut(s) 250
ApeKI GCWGC 2 cut(s) 46, 49
AspLEI GCGC 3 cut(s) 67, 140, 356
AspS9I GGNCC 2 cut(s) 246, 247
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 2 cut(s) 66, 250
AxyI CCTNAGG 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 250
BamHI GGATCC 1 cut(s) 559
BanI GGYRCC 1 cut(s) 353
BanII GRGCYC 1 cut(s) 250
BbsI GAAGAC 3 cut(s) 259, 512, 558
BbvI GCAGC 2 cut(s) 58, 61
BccI CCATC 1 cut(s) 494
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BcnI CCSGG 1 cut(s) 358
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 93
BfoI RGCGCY 3 cut(s) 68, 141, 357
BglI GCCNNNNNGGC 1 cut(s) 40
BisI GCNGC 3 cut(s) 44, 47, 50
BlsI GCNGC 3 cut(s) 45, 48, 51
Bme1390I CCNGG 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 246, 247
BmiI GGNNCC 3 cut(s) 248, 355, 561
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 2 cut(s) 21, 61
BpiI GAAGAC 3 cut(s) 259, 512, 558
BpmI CTGGAG 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 358
BsaHI GRCGYC 2 cut(s) 300, 354
BsaJI CCNNGG 3 cut(s) 38, 294, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 256, 357
Bse118I RCCGGY 2 cut(s) 82, 350
Bse21I CCTNAGG 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 38, 294, 303
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 3 cut(s) 107, 256, 357
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 451
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 2 cut(s) 58, 61
BshFI GGCC 2 cut(s) 125, 248
BshNI GGYRCC 1 cut(s) 353
BsiSI CCGG 4 cut(s) 83, 101, 351, 357
BslFI GGGAC 2 cut(s) 124, 548
BslI CCNNNNNNNGG 3 cut(s) 107, 256, 357
BsmFI GGGAC 2 cut(s) 124, 548
BsnI GGCC 2 cut(s) 125, 248
Bsp120I GGGCCC 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 1 cut(s) 559
BspACI CCGC 3 cut(s) 43, 342, 512
BspANI GGCC 2 cut(s) 125, 248
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 248, 355, 561
BspPI GGATC 2 cut(s) 554, 567
BspT107I GGYRCC 1 cut(s) 353
BsrFI RCCGGY 2 cut(s) 82, 350
BssAI RCCGGY 2 cut(s) 82, 350
BssECI CCNNGG 3 cut(s) 38, 294, 303
BssMI GATC 1 cut(s) 559
BssNI GRCGYC 2 cut(s) 300, 354
BssT1I CCWWGG 2 cut(s) 294, 303
Bst4CI ACNGT 3 cut(s) 78, 97, 277
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 2 cut(s) 300, 354
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 229
BstH2I RGCGCY 3 cut(s) 68, 141, 357
BstHHI GCGC 3 cut(s) 67, 140, 356
BstKTI GATC 1 cut(s) 562
BstMBI GATC 1 cut(s) 559
BstMWI GCNNNNNNNGC 3 cut(s) 40, 49, 299
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 58, 61
BstV2I GAAGAC 3 cut(s) 259, 512, 558
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 2 cut(s) 125, 248
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 3 cut(s) 67, 140, 356
Cfr10I RCCGGY 2 cut(s) 82, 350
Cfr13I GGNCC 2 cut(s) 246, 247
CseI GACGC 1 cut(s) 308
CviJI RGCY 6 cut(s) 125, 248, 313, 319, 376, 487
CviKI_1 RGCY 6 cut(s) 125, 248, 313, 319, 376, 487
DdeI CTNAG 1 cut(s) 234
DinI GGCGCC 1 cut(s) 355
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 294, 303
Eco147I AGGCCT 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 250
Eco47III AGCGCT 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 342
Eco81I CCTNAGG 1 cut(s) 234
EcoT14I CCWWGG 2 cut(s) 294, 303
EcoT38I GRGCYC 1 cut(s) 250
EgeI GGCGCC 1 cut(s) 355
EheI GGCGCC 1 cut(s) 355
ErhI CCWWGG 2 cut(s) 294, 303
FaiI YATR 4 cut(s) 372, 443, 519, 569
FaqI GGGAC 2 cut(s) 124, 548
FblI GTMKAC 1 cut(s) 92
Fnu4HI GCNGC 3 cut(s) 44, 47, 50
FokI GGATG 1 cut(s) 216
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 3 cut(s) 44, 47, 50
FspBI CTAG 1 cut(s) 345
GlaI GCGC 3 cut(s) 66, 139, 355
GluI GCNGC 3 cut(s) 44, 47, 50
GsuI CTGGAG 1 cut(s) 118
HaeII RGCGCY 3 cut(s) 68, 141, 357
HaeIII GGCC 2 cut(s) 125, 248
HapII CCGG 4 cut(s) 83, 101, 351, 357
HgaI GACGC 1 cut(s) 308
HhaI GCGC 3 cut(s) 67, 140, 356
Hin1I GRCGYC 2 cut(s) 300, 354
Hin6I GCGC 3 cut(s) 65, 138, 354
HinP1I GCGC 3 cut(s) 65, 138, 354
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 2 cut(s) 11, 191
HpaII CCGG 4 cut(s) 83, 101, 351, 357
HphI GGTGA 2 cut(s) 66, 250
Hpy166II GTNNAC 2 cut(s) 93, 547
Hpy188I TCNGA 2 cut(s) 10, 169
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 93, 547
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 317, 454
HpyCH4III ACNGT 3 cut(s) 78, 97, 277
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 49, 299
HpyF3I CTNAG 1 cut(s) 234
Hsp92I GRCGYC 2 cut(s) 300, 354
HspAI GCGC 3 cut(s) 65, 138, 354
KasI GGCGCC 1 cut(s) 353
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
Kzo9I GATC 1 cut(s) 559
LpnPI CCDG 8 cut(s) 96, 114, 148, 246, 263, 333, 364, 370
Lsp1109I GCAGC 2 cut(s) 58, 61
LweI GCATC 2 cut(s) 21, 61
MaeI CTAG 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 72
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 5 cut(s) 188, 259, 328, 517, 563
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 2 cut(s) 156, 211
Mly113I GGCGCC 1 cut(s) 354
MlyI GAGTC 1 cut(s) 5
MnlI CCTC 9 cut(s) 48, 115, 229, 234, 246, 250, 403, 429, 550
MroNI GCCGGC 1 cut(s) 350
MseI TTAA 1 cut(s) 309
MspI CCGG 4 cut(s) 83, 101, 351, 357
MspR9I CCNGG 1 cut(s) 358
MwoI GCNNNNNNNGC 3 cut(s) 40, 49, 299
NaeI GCCGGC 1 cut(s) 352
NarI GGCGCC 1 cut(s) 354
NciI CCSGG 1 cut(s) 358
NdeII GATC 1 cut(s) 559
NgoMIV GCCGGC 1 cut(s) 350
NlaIV GGNNCC 3 cut(s) 248, 355, 561
NmeAIII GCCGAG 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 72
PceI AGGCCT 1 cut(s) 125
PcsI WCGNNNNNNNCGW 4 cut(s) 11, 20, 86, 390
PdiI GCCGGC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 191
PflFI GACNNNGTC 1 cut(s) 263
PkrI GCNGC 3 cut(s) 45, 48, 51
PleI GAGTC 1 cut(s) 5
PluTI GGCGCC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 5
PspN4I GGNNCC 3 cut(s) 248, 355, 561
PspOMI GGGCCC 1 cut(s) 246
PspPI GGNCC 2 cut(s) 246, 247
PsuI RGATCY 1 cut(s) 559
PsyI GACNNNGTC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 3 cut(s) 44, 47, 50
Sau3AI GATC 1 cut(s) 559
Sau96I GGNCC 2 cut(s) 246, 247
SchI GAGTC 1 cut(s) 5
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 2 cut(s) 21, 61
SfcI CTRYAG 1 cut(s) 93
SfoI GGCGCC 1 cut(s) 355
SgrAI CRCCGGYG 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 2 cut(s) 156, 211
SseBI AGGCCT 1 cut(s) 125
SsiI CCGC 3 cut(s) 43, 342, 512
SspDI GGCGCC 1 cut(s) 353
SspMI CTAG 1 cut(s) 345
StuI AGGCCT 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 2 cut(s) 294, 303
TaaI ACNGT 3 cut(s) 78, 97, 277
TaqI TCGA 2 cut(s) 384, 393
TasI AATT 2 cut(s) 156, 211
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 2 cut(s) 46, 49
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 322
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 1 cut(s) 102
Tth111I GACNNNGTC 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 92
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.