Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002986

Physical Location & Seq

Genomic Coordinates Forward (+)

73411496 .. 73411828

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0616300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTGCAGGAGGGTTCATCCCGTGCTGCTCTAGTTCTGTCTGATGAGGGTTTCGTGGATCTTGGTCTGCGTGGGGGTGGAGAGGCTCTCCACGACCGGTTTTTCTCCCTCTTCGGCCCCCTGTTGGCCAAGAGACCCGTCGTGGCCCCTTCGATCACGGCGGCGATCTCCGGTGTGGGGGGCTTGAAGGATCGGATGCTAATCGGCGAGGAGGAAGCTGGGAGGTCTGTTTCCGATTCATGGTGTGGGTCGACTGTGGGAGGAGAAGCATCACGTCCTCCATGGCGGTCCTTGGTTCTACACTCGTTCCATGTTCCTGCTCGCAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1666

Protein Analysis

110

Amino Acids

11.61

Weight (kDa)

6.83

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39785 AT5G39785 AT5G39785 AT5G39785 AT5G39785
fragaria_vesca	FvH4_6g01220 FvH4_6g48640 FvH4_6g48640 FvH4_6g48640 FvH4_6g48640
malus_domestica	MD01G1191200.v1.1 MD09G1050700.v1.1 MD17G1050800.v1.1
prunus_persica	Prupe.3G268100_v2.0.a1
pyrus_communis	pycom111g04180 pycom17g04570
rosa_chinensis	RchiOBHm_Chr2g0168591 RchiOBHm_Chr3g0448731
rosa_laevigata	RLG00000021786 RLG00000025876
rosa_multiflora	Rmu_co8117028.1_g000001 Rmu_sc0002416.1_g000018 Rmu_sc0017810.1_g000001 Rmu_sc0027086.1_g000002
rosa_roxburghii	Rroxscaffold_2G00082920 Rroxscaffold_6G00426990
rosa_rugosa	Rorug02G0534000 Rorug02G0616300
rosa_samantha	Rh2AG604300 Rh2BG617300 Rh2CG585600 Rh2DG627800 Rh3AG014500 Rh3BG014300 Rh3CG013300 Rh3DG014900
rosa_wichuraiana	Rw2G050110 Rw3G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	251
AciI	CCGC	2 cut(s)	161, 286
AclWI	GGATC	2 cut(s)	66, 198
AcoI	YGGCCR	1 cut(s)	126
AfiI	CCNNNNNNNGG	3 cut(s)	124, 177, 240
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	275
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	2 cut(s)	66, 198
AoxI	GGCC	3 cut(s)	115, 126, 144
ApeKI	GCWGC	1 cut(s)	26
AsiGI	ACCGGT	1 cut(s)	96
AspS9I	GGNCC	3 cut(s)	116, 145, 288
AvaII	GGWCC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	32
BisI	GCNGC	2 cut(s)	27, 162
BlsI	GCNGC	2 cut(s)	28, 163
Bme18I	GGWCC	1 cut(s)	288
BmgBI	CACGTC	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	116, 145, 288
BmiI	GGNNCC	2 cut(s)	118, 147
BmsI	GCATC	2 cut(s)	186, 278
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
BsaBI	GATNNNNATC	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	281, 291
BsaWI	WCCGGW	2 cut(s)	96, 170
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 177, 240
Bse118I	RCCGGY	1 cut(s)	96
Bse8I	GATNNNNATC	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	281, 291
BseGI	GGATG	2 cut(s)	17, 201
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	3 cut(s)	124, 177, 240
BseRI	GAGGAG	2 cut(s)	224, 276
BseXI	GCAGC	1 cut(s)	13
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	3 cut(s)	117, 128, 146
BshTI	ACCGGT	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	97, 171
BslI	CCNNNNNNNGG	3 cut(s)	124, 177, 240
BsmAI	GTCTC	1 cut(s)	127
BsnI	GGCC	3 cut(s)	117, 128, 146
Bso31I	GGTCTC	1 cut(s)	127
Bsp143I	GATC	4 cut(s)	58, 153, 165, 190
Bsp19I	CCATGG	1 cut(s)	281
BspACI	CCGC	2 cut(s)	161, 286
BspANI	GGCC	3 cut(s)	117, 128, 146
BspLI	GGNNCC	2 cut(s)	118, 147
BspPI	GGATC	2 cut(s)	66, 198
BspTNI	GGTCTC	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	281, 291
BssMI	GATC	4 cut(s)	58, 153, 165, 190
BssT1I	CCWWGG	2 cut(s)	281, 291
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	322
BstDSI	CCRYGG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	17, 201
BstKTI	GATC	4 cut(s)	61, 156, 168, 193
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	4 cut(s)	58, 153, 165, 190
BstMCI	CGRYCG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	117, 128, 146
BtgI	CCRYGG	1 cut(s)	281
BtrI	CACGTC	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	17, 201
Cac8I	GCNNGC	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	3 cut(s)	116, 145, 288
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	3 cut(s)	240, 282, 311
CviJI	RGCY	6 cut(s)	86, 117, 128, 146, 183, 218
CviKI_1	RGCY	6 cut(s)	86, 117, 128, 146, 183, 218
DpnI	GATC	4 cut(s)	60, 155, 167, 192
DpnII	GATC	4 cut(s)	58, 153, 165, 190
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	281, 291
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	288
EcoT14I	CCWWGG	2 cut(s)	281, 291
ErhI	CCWWGG	2 cut(s)	281, 291
FaeI	CATG	3 cut(s)	243, 285, 314
FaiI	YATR	3 cut(s)	241, 283, 312
FatI	CATG	3 cut(s)	239, 281, 310
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	2 cut(s)	27, 162
FokI	GGATG	2 cut(s)	4, 208
Fsp4HI	GCNGC	2 cut(s)	27, 162
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	2 cut(s)	27, 162
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	3 cut(s)	117, 128, 146
HapII	CCGG	2 cut(s)	97, 171
Hin1II	CATG	3 cut(s)	243, 285, 314
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	2 cut(s)	97, 171
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	3 cut(s)	43, 195, 235
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	159, 181
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	1 cut(s)	7
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	3 cut(s)	243, 285, 314
Kzo9I	GATC	4 cut(s)	58, 153, 165, 190
LpnPI	CCDG	4 cut(s)	110, 134, 184, 204
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	2 cut(s)	186, 278
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	274
MalI	GATC	4 cut(s)	60, 155, 167, 192
MboI	GATC	4 cut(s)	58, 153, 165, 190
MboII	GAAGA	1 cut(s)	103
MflI	RGATCY	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	128
MnlI	CCTC	9 cut(s)	4, 40, 76, 119, 202, 205, 216, 254, 288
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	2 cut(s)	97, 171
NcoI	CCATGG	1 cut(s)	281
NdeII	GATC	4 cut(s)	58, 153, 165, 190
NlaIII	CATG	3 cut(s)	243, 285, 314
NlaIV	GGNNCC	2 cut(s)	118, 147
PfeI	GAWTC	1 cut(s)	236
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	28, 163
PspFI	CCCAGC	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	118, 147
PspPI	GGNCC	3 cut(s)	116, 145, 288
PsuI	RGATCY	1 cut(s)	58
SalI	GTCGAC	1 cut(s)	250
SatI	GCNGC	2 cut(s)	27, 162
Sau3AI	GATC	4 cut(s)	58, 153, 165, 190
Sau96I	GGNCC	3 cut(s)	116, 145, 288
SetI	ASST	3 cut(s)	220, 227, 277
SfaNI	GCATC	2 cut(s)	186, 278
SinI	GGWCC	1 cut(s)	288
SsiI	CCGC	2 cut(s)	161, 286
SspMI	CTAG	1 cut(s)	32
StyI	CCWWGG	2 cut(s)	281, 291
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	152, 251
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	6, 228
VpaK11BI	GGWCC	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.