Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8366677.1

Orthogroup ID

OG0002481

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 953

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8366677.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 952 bp

atgcccctaccctttgaggagtttcaagggaagggggtgttagatttctcatctgattcttcagatttgttagcttcaccagcaccacagggccaccatcagcaacctcaaaagtggaaggagaattgctatgtgggcagcactgagcccacttctgttctcgacaccagaagaagcccaagccctcctacatcctcttcaactctgtcttcttctcacggcagcggcggtggaagtgggtctacagataccacccctaccaccggcgtggcggctgcggctccggcagaaaacaagccatctgaagcaggtctagaagaagcaaaatgtggaccaccacttggaatggaggactgggagagtgtgctgtctgagtcaccaggtcaagagcagtccattcttaggttgatgatgagtgacattgaagacccatctcttggattgaacaagctgttgcagagtggggttggttctcatcaagattttgggtttcatgatgtggtggaggatcaaggttatggcgcctttgaagaacacaatacagggagtttgaatctggggatgagcagcattgctaacccttctctgcaagcaacatcttgttctgaaattcctttcaatggctcaaatgctaccgttttctctgcttcagcgaacaatctgttcccaggttcactacctcctggtttgttccaacagcaacaacaattggttgagcctttggatgagaagccacaaattttcaatccacatatggtgatgaatcaaaaccaagctcagtttaatcaaaatcctgcgatgtttatgccactctcgtattcccaattgcaagaccaccacttcctttccccacctccggcaaaaaggcataattccggtggctttggacccagttacccgggccagagattgccgtttttgaatccgggtcaagagctaatggctcgggtac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007623 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009889 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048511 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0060560 GO:0065007 GO:0071695 GO:0071840 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

317

Amino Acids

33.85

Weight (kDa)

4.71

Isoelectric Point (pI)

72.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00150
fragaria_vesca	FvH4_5g00020 FvH4_5g00020 FvH4_7g11120
malus_domestica	MD00G1043300.v1.1 MD02G1210200.v1.1 MD04G1088100.v1.1 MD07G1115800.v1.1
prunus_persica	Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.5G072300_v2.0.a1 Prupe.5G072300_v2.0.a1
pyrus_communis	pycom02g17200 pycom06g05130 pycom07g10860
rosa_chinensis	RchiOBHm_Chr1g0349141 RchiOBHm_Chr7g0202931
rosa_laevigata	RLG00000003564 RLG00000028602
rosa_multiflora	Rmu_co8366677.1_g000001 Rmu_co8449587.1_g000001 Rmu_sc0008159.1_g000016 Rmu_ssc0000150.1_g000020
rosa_roxburghii	Rroxscaffold_3G00254180 Rroxscaffold_4G00306070
rosa_rugosa	Rorug01G0200700 Rorug07G0074000
rosa_samantha	Rh1AG218400 Rh1BG183800 Rh1CG202900 Rh1DG213600 Rh7AG201800 Rh7BG202000 Rh7CG213100 Rh7DG208800
rosa_wichuraiana	Rw1G018550 Rw7G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	521
AccB7I	CCANNNNNTGG	2 cut(s)	341, 437
AccI	GTMKAC	1 cut(s)	242
AciI	CCGC	4 cut(s)	225, 228, 272, 278
AclWI	GGATC	1 cut(s)	516
AcsI	RAATTY	2 cut(s)	609, 738
AcuI	CTGAAG	3 cut(s)	45, 324, 633
AcyI	GRCGYC	1 cut(s)	522
AfaI	GTAC	1 cut(s)	951
AfiI	CCNNNNNNNGG	6 cut(s)	263, 341, 402, 437, 620, 856
AgsI	TTSAA	9 cut(s)	26, 201, 425, 445, 530, 553, 619, 745, 922
AjnI	CCWGG	3 cut(s)	379, 667, 682
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	4 cut(s)	74, 451, 776, 937
AluI	AGCT	4 cut(s)	74, 451, 776, 937
AlwI	GGATC	1 cut(s)	516
Ama87I	CYCGRG	2 cut(s)	898, 945
AoxI	GGCC	2 cut(s)	91, 901
ApeKI	GCWGC	4 cut(s)	138, 222, 275, 567
ApoI	RAATTY	2 cut(s)	609, 738
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	4 cut(s)	91, 332, 887, 901
AsuC2I	CCSGG	3 cut(s)	899, 900, 927
AsuHPI	GGTGA	3 cut(s)	69, 369, 769
AvaI	CYCGRG	2 cut(s)	898, 945
AvaII	GGWCC	2 cut(s)	332, 887
BanI	GGYRCC	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	150
BarI	GAAGNNNNNNTAC	2 cut(s)	226, 258
BbsI	GAAGAC	2 cut(s)	201, 432
BbvI	GCAGC	4 cut(s)	150, 234, 262, 579
BccI	CCATC	3 cut(s)	105, 307, 439
BceAI	ACGGC	2 cut(s)	235, 898
BcgI	CGANNNNNNTGC	2 cut(s)	787, 821
BciT130I	CCWGG	3 cut(s)	381, 669, 684
BcnI	CCSGG	3 cut(s)	899, 900, 927
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	525
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	7 cut(s)	139, 223, 226, 273, 276, 279, 568
BlsI	GCNGC	7 cut(s)	140, 224, 227, 274, 277, 280, 569
Bme1390I	CCNGG	6 cut(s)	381, 669, 684, 899, 900, 927
Bme18I	GGWCC	2 cut(s)	332, 887
BmeT110I	CYCGRG	2 cut(s)	898, 945
BmgT120I	GGNCC	4 cut(s)	91, 332, 887, 901
BmiI	GGNNCC	3 cut(s)	282, 523, 889
BmrFI	CCNGG	6 cut(s)	381, 669, 684, 899, 900, 927
BmrI	ACTGGG	2 cut(s)	364, 885
BmuI	ACTGGG	2 cut(s)	364, 885
BpiI	GAAGAC	2 cut(s)	201, 432
BpuMI	CCSGG	3 cut(s)	899, 900, 927
BsaHI	GRCGYC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	667, 898
BsaWI	WCCGGW	1 cut(s)	875
Bsc4I	CCNNNNNNNGG	6 cut(s)	263, 341, 402, 437, 620, 856
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	359, 891
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	3 cut(s)	381, 669, 684
BseDI	CCNNGG	2 cut(s)	667, 898
BseGI	GGATG	3 cut(s)	191, 567, 730
BseLI	CCNNNNNNNGG	6 cut(s)	263, 341, 402, 437, 620, 856
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	3 cut(s)	135, 363, 791
BseNI	ACTGG	2 cut(s)	359, 891
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	4 cut(s)	150, 234, 262, 579
BshFI	GGCC	2 cut(s)	93, 903
BshNI	GGYRCC	1 cut(s)	521
BsiHKCI	CYCGRG	2 cut(s)	898, 945
BsiSI	CCGG	6 cut(s)	264, 284, 857, 876, 899, 926
BslI	CCNNNNNNNGG	6 cut(s)	263, 341, 402, 437, 620, 856
BsnI	GGCC	2 cut(s)	93, 903
BsoBI	CYCGRG	2 cut(s)	898, 945
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	508
BspACI	CCGC	4 cut(s)	225, 228, 272, 278
BspANI	GGCC	2 cut(s)	93, 903
BspCNI	CTCAG	3 cut(s)	136, 364, 790
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	3 cut(s)	282, 523, 889
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	516
BspT107I	GGYRCC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	570
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	359, 891
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	667, 898
BssMI	GATC	1 cut(s)	508
BssNI	GRCGYC	1 cut(s)	522
Bst2UI	CCWGG	3 cut(s)	381, 669, 684
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	1 cut(s)	202
BstACI	GRCGYC	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	4 cut(s)	144, 372, 401, 777
BstF5I	GGATG	3 cut(s)	191, 567, 730
BstH2I	RGCGCY	1 cut(s)	525
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	1 cut(s)	511
BstMBI	GATC	1 cut(s)	508
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 135, 278, 284
BstNI	CCWGG	3 cut(s)	381, 669, 684
BstSCI	CCNGG	6 cut(s)	379, 667, 682, 897, 898, 925
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	4 cut(s)	150, 234, 262, 579
BstV2I	GAAGAC	2 cut(s)	201, 432
BstXI	CCANNNNNNTGG	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	93, 903
BtgZI	GCGATG	1 cut(s)	812
BtsCI	GGATG	3 cut(s)	191, 567, 730
BtsIMutI	CAGTG	1 cut(s)	141
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	591
CciI	TCATGA	1 cut(s)	493
CfoI	GCGC	1 cut(s)	524
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	4 cut(s)	91, 332, 887, 901
Cfr9I	CCCGGG	1 cut(s)	898
CsiI	ACCWGGT	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	950
CviAII	CATG	1 cut(s)	494
CviQI	GTAC	1 cut(s)	950
DdeI	CTNAG	4 cut(s)	144, 372, 401, 777
DinI	GGCGCC	1 cut(s)	523
DpnI	GATC	1 cut(s)	510
DpnII	GATC	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	332, 887
Eco57I	CTGAAG	3 cut(s)	45, 324, 633
Eco88I	CYCGRG	2 cut(s)	898, 945
EcoRII	CCWGG	3 cut(s)	379, 667, 682
EcoT38I	GRGCYC	1 cut(s)	150
EgeI	GGCGCC	1 cut(s)	523
EheI	GGCGCC	1 cut(s)	523
FaeI	CATG	1 cut(s)	497
FaiI	YATR	7 cut(s)	132, 495, 519, 753, 755, 806, 870
FatI	CATG	1 cut(s)	493
FauNDI	CATATG	1 cut(s)	753
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	7 cut(s)	139, 223, 226, 273, 276, 279, 568
FokI	GGATG	3 cut(s)	178, 574, 737
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	7 cut(s)	139, 223, 226, 273, 276, 279, 568
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	7 cut(s)	139, 223, 226, 273, 276, 279, 568
HaeII	RGCGCY	1 cut(s)	525
HaeIII	GGCC	2 cut(s)	93, 903
HapII	CCGG	6 cut(s)	264, 284, 857, 876, 899, 926
HhaI	GCGC	1 cut(s)	524
Hin1I	GRCGYC	1 cut(s)	522
Hin1II	CATG	1 cut(s)	497
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HinfI	GANTC	5 cut(s)	56, 374, 553, 763, 922
HpaII	CCGG	6 cut(s)	264, 284, 857, 876, 899, 926
HphI	GGTGA	3 cut(s)	69, 369, 769
Hpy166II	GTNNAC	3 cut(s)	243, 332, 674
Hpy188I	TCNGA	5 cut(s)	55, 64, 304, 373, 607
Hpy188III	TCNNGA	6 cut(s)	161, 314, 386, 479, 494, 932
Hpy8I	GTNNAC	3 cut(s)	243, 332, 674
HpyAV	CCTTC	3 cut(s)	25, 112, 591
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4V	TGCA	3 cut(s)	457, 589, 829
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 135, 278, 284
HpyF3I	CTNAG	4 cut(s)	144, 372, 401, 777
Hsp92I	GRCGYC	1 cut(s)	522
Hsp92II	CATG	1 cut(s)	497
HspAI	GCGC	1 cut(s)	522
KasI	GGCGCC	1 cut(s)	521
Kzo9I	GATC	1 cut(s)	508
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	4 cut(s)	150, 234, 262, 579
MabI	ACCWGGT	1 cut(s)	379
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	3 cut(s)	375, 416, 893
MalI	GATC	1 cut(s)	510
MboI	GATC	1 cut(s)	508
MboII	GAAGA	8 cut(s)	51, 183, 189, 201, 204, 329, 437, 542
MfeI	CAATTG	2 cut(s)	707, 824
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	6 cut(s)	124, 609, 707, 738, 824, 871
Mly113I	GGCGCC	1 cut(s)	522
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	8 cut(s)	10, 117, 195, 205, 343, 499, 690, 864
MseI	TTAA	1 cut(s)	783
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	6 cut(s)	264, 284, 857, 876, 899, 926
MspR9I	CCNGG	6 cut(s)	381, 669, 684, 899, 900, 927
MunI	CAATTG	2 cut(s)	707, 824
MvaI	CCWGG	3 cut(s)	381, 669, 684
MwoI	GCNNNNNNNGC	4 cut(s)	80, 135, 278, 284
NarI	GGCGCC	1 cut(s)	522
NciI	CCSGG	3 cut(s)	899, 900, 927
NdeI	CATATG	1 cut(s)	753
NdeII	GATC	1 cut(s)	508
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	3 cut(s)	282, 523, 889
NmuCI	GTSAC	2 cut(s)	375, 416
OliI	CACNNNNGTG	1 cut(s)	266
PagI	TCATGA	1 cut(s)	493
PfeI	GAWTC	4 cut(s)	56, 553, 763, 922
PflMI	CCANNNNNTGG	2 cut(s)	341, 437
PkrI	GCNGC	7 cut(s)	140, 224, 227, 274, 277, 280, 569
PleI	GAGTC	1 cut(s)	382
PluTI	GGCGCC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	382
Psp6I	CCWGG	3 cut(s)	379, 667, 682
PspGI	CCWGG	3 cut(s)	379, 667, 682
PspN4I	GGNNCC	3 cut(s)	282, 523, 889
PspPI	GGNCC	4 cut(s)	91, 332, 887, 901
RsaI	GTAC	1 cut(s)	951
RsaNI	GTAC	1 cut(s)	950
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	7 cut(s)	139, 223, 226, 273, 276, 279, 568
Sau3AI	GATC	1 cut(s)	508
Sau96I	GGNCC	4 cut(s)	91, 332, 887, 901
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	6 cut(s)	381, 669, 684, 899, 900, 927
SduI	GDGCHC	1 cut(s)	150
SexAI	ACCWGGT	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	243
SfoI	GGCGCC	1 cut(s)	523
SgrAI	CRCCGGYG	1 cut(s)	263
SinI	GGWCC	2 cut(s)	332, 887
SmaI	CCCGGG	1 cut(s)	900
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	6 cut(s)	124, 609, 707, 738, 824, 871
SsiI	CCGC	4 cut(s)	225, 228, 272, 278
SspDI	GGCGCC	1 cut(s)	521
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	6 cut(s)	379, 667, 682, 897, 898, 925
TaaI	ACNGT	1 cut(s)	637
TaqI	TCGA	1 cut(s)	162
TasI	AATT	6 cut(s)	124, 609, 707, 738, 824, 871
TauI	GCSGC	3 cut(s)	228, 275, 281
TfiI	GAWTC	4 cut(s)	56, 553, 763, 922
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	2 cut(s)	375, 416
TseI	GCWGC	4 cut(s)	138, 222, 275, 567
Tsp45I	GTSAC	2 cut(s)	375, 416
TspDTI	ATGAA	2 cut(s)	482, 776
TspMI	CCCGGG	1 cut(s)	898
TspRI	CASTG	1 cut(s)	148
Van91I	CCANNNNNTGG	2 cut(s)	341, 437
VpaK11BI	GGWCC	2 cut(s)	332, 887
XapI	RAATTY	2 cut(s)	609, 738
XbaI	TCTAGA	1 cut(s)	313
XmaI	CCCGGG	1 cut(s)	898
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.