Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002481

Physical Location & Seq

Genomic Coordinates Reverse (-)

41495190 .. 41498124

Gene Structure 2935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG213600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGAAGGCCATGCCCCTACCCTTTGAGGAGTTTCAAGGGAAGGGGGTGTTAGATTTCTCATCTGATTCTTCAGATTTGTTAGCTTCACCAGCACCACAGGGCCACCATCAACAACCTCAAAAGTGGAAGGAGAATTGCTATGTGGGCAGCACTGAGCCCACTTCTGTTCTTGACACCAGAAGAAGCCCAAGCCCTCCTACATCCTCTTCAACTCTGTCTTCTTCTCACGGCAGCGGCGGTGGAAGTGGGTCTACAGATACCACAACTACCACCGGCGTGGCGGCGGCTCCGGCAGAAAACAAGCCATCTGAAGCAGGTCTAGAGGAAGCAAAATGTGGACCACCACTTGGAATGGAGGACTGGGAGAGTGTGCTGTCTGAGTCACCAGGTCAGGAGCAGTCCATTCTTAGGTTGATGATGAGTGACATTGAAGACCCATCTCTTGGATTGAACAAGCTGTTGCAGAGTGGGGTTGGTTCTCATCAAGATTTTGGGTTTCATGATGTGGTGGAGGATCAAGGTTATGGCGCCTTTGAAGAACACAATACAGGGAGTTTGAATTTGGGGATGAGCAGCATTGCTAACCCTTCTCTGCAAGCAACATCTTGTTCTGAAATTCCTTTCAATGGCTCAAATGCTACCGTTTTCTCTGCTTCAGCGAACAATCTGTTCCCAGGTTCACTACCTCCTGGTTTGTTTCAACAGCAACAACAATTGGTTGAGCCTTTGGATGAGAAGCCACAGATTTTCAATCCACATATGGTGATGAATCAAAACCAAGCTCAGTTTAATCAAAATCCTGCGATGTTTATGCCACTGACGTATTCCCAATTGCAAGACCACCACTTCCTTTCCCCCCCTCCGGCAAAAAGGCATAATTCCGGTGGCTATGGACCCAGTTACCCGGGCCAGAGAGTGCCGTTTTTGAATCCGGGTCAAGAGCTAATGGCTCGGGTACAACAGCAGCAGCAGCAGCAACATCAGCAGCAGCAGCAGCAGCTTCCGTTGCTTCCACAACATCTCCAACACAGGCCAGTAATGTTAGCCGCGAAGGACAAAATGGTGAACAATCTGGAAGGGGATAAAGAATTGATGAACAACCACCAGCTTCATCAAGCGATAGTTGACCAGCTTGTCAATGCAGCAGAGCTGATCGAAACAGACAATCCGTTACTCGCGCAAGGGATATTGGCGCGGCTCAATCAACAGCTCTCTCCTATTGTTCTCCAATTTGCCAACTTTACTTGCAACCAAGTCATCCTTGAATCTGTGGAAGGCTTTAATCGTGTCCATGTTATCGATTTTGATATTGGCTATGGTGGGCAATGGGCTTCTTTTATGCAAGAGGTGGCTTTAAGAAATGGTGGTTCGCCTCCTTCTCTTAAAATCACTGCATTTGTATGCTCTTCGATGCACGATGAATTCGAGCTGGCTTTCACTCAAGAAAACCTCAAGAACTTTGCTTGTGAGCTCAATTTGGCATTTGAACTCGAAATTGTAAGTATTGAGGCATTGAACTCTGGTTCTTGGCCATTACCACTTCATGGCTCAGAGGGTGTGGCAGTTGCTGTCAATCTTCCAATTGCTTCCTTCTTGAATTCCCGTTTATCGCTTCCTTTGGTCCTGCGCTTTGTTAAGCAGCTTTCTCCCAAAATTGTGGTATCCTTGGAAAGGGGCAGTGACCGGACTGATATCCCATTTCCCCACCAAATCATTCAAGCCGTTCACTGTTACTCAAGCCTTCTTGAATCATTAGATGCTGTAAATGCAAACCTAGATGCCCTGCAAAAGATTGAGCGGTACTTGCTCCAACCAAGCATTGAAAAGATTGTAATGGGCTGCCATCTTTCTCCTAAAAGGACACCGACACCTTCTTGGAGGACTCTGTTTTTGTCGTCTGGGTTCTCCCCGTTGACATTCAGCAATTTCACCGAGTCCCAAGCCGAGTGCTTGGTGCAACGGACTCCAGTTGGGGGTTTCCATGTTGAGAAGAGACAGTCTTCGCTTGTGCTCTGCTGGCAGCGGAAGGATCTCATCTCAGCCTCAGGGTGGCGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007623 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009889 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048511 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0060560 GO:0065007 GO:0071695 GO:0071840 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

686

Amino Acids

75.23

Weight (kDa)

5.29

Isoelectric Point (pI)

61.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	403 - 685	8e-72	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00150
fragaria_vesca	FvH4_5g00020 FvH4_5g00020 FvH4_7g11120
malus_domestica	MD00G1043300.v1.1 MD02G1210200.v1.1 MD04G1088100.v1.1 MD07G1115800.v1.1
prunus_persica	Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.5G072300_v2.0.a1 Prupe.5G072300_v2.0.a1
pyrus_communis	pycom02g17200 pycom06g05130 pycom07g10860
rosa_chinensis	RchiOBHm_Chr1g0349141 RchiOBHm_Chr7g0202931
rosa_laevigata	RLG00000003564 RLG00000028602
rosa_multiflora	Rmu_co8366677.1_g000001 Rmu_co8449587.1_g000001 Rmu_sc0008159.1_g000016 Rmu_ssc0000150.1_g000020
rosa_roxburghii	Rroxscaffold_3G00254180 Rroxscaffold_4G00306070
rosa_rugosa	Rorug01G0200700 Rorug07G0074000
rosa_samantha	Rh1AG218400 Rh1BG183800 Rh1CG202900 Rh1DG213600 Rh7AG201800 Rh7BG202000 Rh7CG213100 Rh7DG208800
rosa_wichuraiana	Rw1G018550 Rw7G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1133
Acc36I	ACCTGC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	527
AccB7I	CCANNNNNTGG	3 cut(s)	347, 443, 1544
AccBSI	CCGCTC	1 cut(s)	1798
AccI	GTMKAC	1 cut(s)	251
AccII	CGCG	3 cut(s)	1049, 1178, 1195
AciI	CCGC	9 cut(s)	234, 237, 281, 284, 1047, 1195, 1798, 2023, 2053
AclWI	GGATC	2 cut(s)	522, 2037
AcoI	YGGCCR	1 cut(s)	1529
AcsI	RAATTY	4 cut(s)	559, 615, 1421, 1597
AcuI	CTGAAG	3 cut(s)	54, 330, 639
AcyI	GRCGYC	1 cut(s)	528
AfaI	GTAC	2 cut(s)	957, 1802
AfiI	CCNNNNNNNGG	9 cut(s)	347, 408, 443, 626, 862, 1544, 1671, 1973, 2049
AjnI	CCWGG	3 cut(s)	385, 673, 688
AleI	CACNNNNGTG	1 cut(s)	275
Alw21I	GWGCWC	2 cut(s)	1473, 2013
Alw26I	GTCTC	1 cut(s)	1987
AlwI	GGATC	2 cut(s)	522, 2037
AlwNI	CAGNNNCTG	1 cut(s)	1568
Ama87I	CYCGRG	2 cut(s)	904, 951
AoxI	GGCC	5 cut(s)	6, 100, 907, 1031, 1529
ApoI	RAATTY	4 cut(s)	559, 615, 1421, 1597
ArsI	GACNNNNNNTTYG	2 cut(s)	1873, 1905
AspLEI	GCGC	4 cut(s)	530, 1180, 1195, 1629
AspS9I	GGNCC	5 cut(s)	100, 338, 893, 907, 1621
AsuC2I	CCSGG	3 cut(s)	905, 906, 933
AsuHPI	GGTGA	5 cut(s)	78, 375, 775, 1075, 1921
AvaI	CYCGRG	2 cut(s)	904, 951
AvaII	GGWCC	3 cut(s)	338, 893, 1621
AxyI	CCTNAGG	1 cut(s)	2044
BalI	TGGCCA	1 cut(s)	1531
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	2 cut(s)	159, 1473
BarI	GAAGNNNNNNTAC	2 cut(s)	235, 267
BbsI	GAAGAC	3 cut(s)	210, 438, 1992
Bbv12I	GWGCWC	2 cut(s)	1473, 2013
BccI	CCATC	4 cut(s)	114, 313, 445, 1851
BceAI	ACGGC	3 cut(s)	244, 904, 1706
BcgI	CGANNNNNNTGC	2 cut(s)	793, 827
BciT130I	CCWGG	3 cut(s)	387, 675, 690
BciVI	GTATCC	1 cut(s)	1672
BcnI	CCSGG	3 cut(s)	905, 906, 933
BcoDI	GTCTC	1 cut(s)	1987
BfaI	CTAG	2 cut(s)	320, 1775
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	1672
Bme1390I	CCNGG	6 cut(s)	387, 675, 690, 905, 906, 933
Bme18I	GGWCC	3 cut(s)	338, 893, 1621
BmeT110I	CYCGRG	2 cut(s)	904, 951
BmgT120I	GGNCC	5 cut(s)	100, 338, 893, 907, 1621
BmiI	GGNNCC	3 cut(s)	288, 529, 895
BmrFI	CCNGG	6 cut(s)	387, 675, 690, 905, 906, 933
BmrI	ACTGGG	2 cut(s)	370, 891
BmsI	GCATC	3 cut(s)	1401, 1747, 1768
BmuI	ACTGGG	2 cut(s)	370, 891
BpiI	GAAGAC	3 cut(s)	210, 438, 1992
BpmI	CTGGAG	1 cut(s)	1950
BpuEI	CTTGAG	3 cut(s)	1425, 1436, 1720
BpuMI	CCSGG	3 cut(s)	905, 906, 933
Bsa29I	ATCGAT	1 cut(s)	1299
BsaHI	GRCGYC	1 cut(s)	528
BsaJI	CCNNGG	3 cut(s)	673, 904, 1665
BsaWI	WCCGGW	2 cut(s)	881, 1683
BsaXI	ACNNNNNCTCC	2 cut(s)	1005, 1035
Bsc4I	CCNNNNNNNGG	9 cut(s)	347, 408, 443, 626, 862, 1544, 1671, 1973, 2049
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	4 cut(s)	365, 897, 1034, 1967
Bse21I	CCTNAGG	1 cut(s)	2044
Bse3DI	GCAATG	2 cut(s)	576, 1331
BseBI	CCWGG	3 cut(s)	387, 675, 690
BseCI	ATCGAT	1 cut(s)	1299
BseDI	CCNNGG	3 cut(s)	673, 904, 1665
BseGI	GGATG	4 cut(s)	200, 573, 736, 1257
BseLI	CCNNNNNNNGG	9 cut(s)	347, 408, 443, 626, 862, 1544, 1671, 1973, 2049
BseMI	GCAATG	2 cut(s)	576, 1331
BseMII	CTCAG	6 cut(s)	144, 369, 797, 1563, 2052, 2058
BseNI	ACTGG	4 cut(s)	365, 897, 1034, 1967
BseRI	GAGGAG	1 cut(s)	41
Bsh1236I	CGCG	3 cut(s)	1049, 1178, 1195
BshFI	GGCC	5 cut(s)	8, 102, 909, 1033, 1531
BshNI	GGYRCC	1 cut(s)	527
BshVI	ATCGAT	1 cut(s)	1299
BsiHKAI	GWGCWC	2 cut(s)	1473, 2013
BsiHKCI	CYCGRG	2 cut(s)	904, 951
BsiSI	CCGG	7 cut(s)	273, 290, 863, 882, 905, 932, 1684
BslFI	GGGAC	1 cut(s)	1921
BslI	CCNNNNNNNGG	9 cut(s)	347, 408, 443, 626, 862, 1544, 1671, 1973, 2049
BsmAI	GTCTC	1 cut(s)	1987
BsmFI	GGGAC	1 cut(s)	1921
BsnI	GGCC	5 cut(s)	8, 102, 909, 1033, 1531
BsoBI	CYCGRG	2 cut(s)	904, 951
Bsp1286I	GDGCHC	3 cut(s)	159, 1473, 2013
Bsp143I	GATC	3 cut(s)	514, 1152, 2029
BspACI	CCGC	9 cut(s)	234, 237, 281, 284, 1047, 1195, 1798, 2023, 2053
BspANI	GGCC	5 cut(s)	8, 102, 909, 1033, 1531
BspCNI	CTCAG	6 cut(s)	145, 370, 796, 1562, 2051, 2057
BspDI	ATCGAT	1 cut(s)	1299
BspFNI	CGCG	3 cut(s)	1049, 1178, 1195
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	3 cut(s)	288, 529, 895
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	2 cut(s)	522, 2037
BspQI	GCTCTTC	1 cut(s)	1411
BspT107I	GGYRCC	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	1798
BsrDI	GCAATG	2 cut(s)	576, 1331
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	4 cut(s)	365, 897, 1034, 1967
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	3 cut(s)	673, 904, 1665
BssMI	GATC	3 cut(s)	514, 1152, 2029
BssNI	GRCGYC	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	1665
Bst2UI	CCWGG	3 cut(s)	387, 675, 690
Bst4CI	ACNGT	3 cut(s)	643, 1730, 1998
Bst6I	CTCTTC	3 cut(s)	211, 1411, 1985
BstACI	GRCGYC	1 cut(s)	528
BstC8I	GCNNGC	3 cut(s)	597, 1431, 2018
BstDEI	CTNAG	7 cut(s)	153, 378, 407, 783, 1549, 2038, 2044
BstENI	CCTNNNNNAGG	1 cut(s)	1669
BstF5I	GGATG	4 cut(s)	200, 573, 736, 1257
BstFNI	CGCG	3 cut(s)	1049, 1178, 1195
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	4 cut(s)	530, 1180, 1195, 1629
BstKTI	GATC	3 cut(s)	517, 1155, 2032
BstMAI	GTCTC	1 cut(s)	1987
BstMBI	GATC	3 cut(s)	514, 1152, 2029
BstNI	CCWGG	3 cut(s)	387, 675, 690
BstSCI	CCNGG	6 cut(s)	385, 673, 688, 903, 904, 931
BstSFI	CTRYAG	1 cut(s)	252
BstUI	CGCG	3 cut(s)	1049, 1178, 1195
BstV2I	GAAGAC	3 cut(s)	210, 438, 1992
BstX2I	RGATCY	1 cut(s)	2029
BstXI	CCANNNNNNTGG	2 cut(s)	277, 1657
BstYI	RGATCY	1 cut(s)	2029
Bsu15I	ATCGAT	1 cut(s)	1299
Bsu36I	CCTNAGG	1 cut(s)	2044
BsuI	GTATCC	1 cut(s)	1672
BsuRI	GGCC	5 cut(s)	8, 102, 909, 1033, 1531
BsuTUI	ATCGAT	1 cut(s)	1299
BtgZI	GCGATG	1 cut(s)	818
BtsCI	GGATG	4 cut(s)	200, 573, 736, 1257
BtsI	GCAGTG	2 cut(s)	1389, 1684
BtsIMutI	CAGTG	5 cut(s)	150, 815, 1389, 1684, 1726
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	3 cut(s)	597, 1431, 2018
CaiI	CAGNNNCTG	1 cut(s)	1568
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	4 cut(s)	530, 1180, 1195, 1629
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	5 cut(s)	100, 338, 893, 907, 1621
Cfr9I	CCCGGG	1 cut(s)	904
ClaI	ATCGAT	1 cut(s)	1299
CsiI	ACCWGGT	1 cut(s)	385
Csp6I	GTAC	2 cut(s)	956, 1801
CviAII	CATG	5 cut(s)	10, 500, 1292, 1544, 1982
CviQI	GTAC	2 cut(s)	956, 1801
DdeI	CTNAG	7 cut(s)	153, 378, 407, 783, 1549, 2038, 2044
DinI	GGCGCC	1 cut(s)	529
DpnI	GATC	3 cut(s)	516, 1154, 2031
DpnII	GATC	3 cut(s)	514, 1152, 2029
DrdI	GACNNNNNNGTC	1 cut(s)	1133
DseDI	GACNNNNNNGTC	1 cut(s)	1133
EaeI	YGGCCR	1 cut(s)	1529
Eam1104I	CTCTTC	3 cut(s)	211, 1411, 1985
EarI	CTCTTC	3 cut(s)	211, 1411, 1985
Ecl136II	GAGCTC	1 cut(s)	1471
Eco130I	CCWWGG	1 cut(s)	1665
Eco24I	GRGCYC	2 cut(s)	159, 1473
Eco32I	GATATC	1 cut(s)	1693
Eco47I	GGWCC	3 cut(s)	338, 893, 1621
Eco53kI	GAGCTC	1 cut(s)	1471
Eco57I	CTGAAG	3 cut(s)	54, 330, 639
Eco81I	CCTNAGG	1 cut(s)	2044
Eco88I	CYCGRG	2 cut(s)	904, 951
EcoICRI	GAGCTC	1 cut(s)	1471
EcoNI	CCTNNNNNAGG	1 cut(s)	1669
EcoRI	GAATTC	2 cut(s)	1421, 1597
EcoRII	CCWGG	3 cut(s)	385, 673, 688
EcoRV	GATATC	1 cut(s)	1693
EcoT14I	CCWWGG	1 cut(s)	1665
EcoT38I	GRGCYC	2 cut(s)	159, 1473
EgeI	GGCGCC	1 cut(s)	529
EheI	GGCGCC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	1665
FaeI	CATG	5 cut(s)	13, 503, 1295, 1547, 1985
FalI	AAGNNNNNCTT	2 cut(s)	1245, 1277
FaqI	GGGAC	1 cut(s)	1921
FatI	CATG	5 cut(s)	9, 499, 1291, 1543, 1981
FauNDI	CATATG	1 cut(s)	759
FblI	GTMKAC	1 cut(s)	251
FokI	GGATG	4 cut(s)	187, 580, 743, 1244
FriOI	GRGCYC	2 cut(s)	159, 1473
FspBI	CTAG	2 cut(s)	320, 1775
GlaI	GCGC	4 cut(s)	529, 1179, 1194, 1628
GsuI	CTGGAG	1 cut(s)	1950
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	5 cut(s)	8, 102, 909, 1033, 1531
HapII	CCGG	7 cut(s)	273, 290, 863, 882, 905, 932, 1684
HhaI	GCGC	4 cut(s)	530, 1180, 1195, 1629
Hin1I	GRCGYC	1 cut(s)	528
Hin1II	CATG	5 cut(s)	13, 503, 1295, 1547, 1985
Hin6I	GCGC	4 cut(s)	528, 1178, 1193, 1627
HinP1I	GCGC	4 cut(s)	528, 1178, 1193, 1627
HincII	GTYRAC	2 cut(s)	1126, 1914
HindII	GTYRAC	2 cut(s)	1126, 1914
HinfI	GANTC	9 cut(s)	65, 380, 769, 928, 1265, 1748, 1882, 1934, 1963
HpaII	CCGG	7 cut(s)	273, 290, 863, 882, 905, 932, 1684
HphI	GGTGA	5 cut(s)	78, 375, 775, 1075, 1921
Hpy166II	GTNNAC	7 cut(s)	252, 338, 680, 1066, 1126, 1726, 1914
Hpy188I	TCNGA	6 cut(s)	64, 73, 310, 379, 613, 1552
Hpy8I	GTNNAC	7 cut(s)	252, 338, 680, 1066, 1126, 1726, 1914
HpyCH4III	ACNGT	3 cut(s)	643, 1730, 1998
HpyCH4IV	ACGT	1 cut(s)	821
HpyF3I	CTNAG	7 cut(s)	153, 378, 407, 783, 1549, 2038, 2044
HpySE526I	ACGT	1 cut(s)	821
Hsp92I	GRCGYC	1 cut(s)	528
Hsp92II	CATG	5 cut(s)	13, 503, 1295, 1547, 1985
HspAI	GCGC	4 cut(s)	528, 1178, 1193, 1627
KasI	GGCGCC	1 cut(s)	527
Kzo9I	GATC	3 cut(s)	514, 1152, 2029
LguI	GCTCTTC	1 cut(s)	1411
LmnI	GCTCC	3 cut(s)	292, 394, 1812
LweI	GCATC	3 cut(s)	1401, 1747, 1768
MabI	ACCWGGT	1 cut(s)	385
MaeI	CTAG	2 cut(s)	320, 1775
MaeII	ACGT	1 cut(s)	821
MaeIII	GTNAC	6 cut(s)	381, 422, 899, 1170, 1679, 1730
MalI	GATC	3 cut(s)	516, 1154, 2031
MbiI	CCGCTC	1 cut(s)	1798
MboI	GATC	3 cut(s)	514, 1152, 2029
MfeI	CAATTG	3 cut(s)	713, 830, 1581
MflI	RGATCY	1 cut(s)	2029
MhlI	GDGCHC	3 cut(s)	159, 1473, 2013
MlsI	TGGCCA	1 cut(s)	1531
MluNI	TGGCCA	1 cut(s)	1531
Mly113I	GGCGCC	1 cut(s)	528
MlyI	GAGTC	4 cut(s)	389, 1876, 1943, 1957
MmeI	TCCRAC	2 cut(s)	1048, 1834
Mox20I	TGGCCA	1 cut(s)	1531
MscI	TGGCCA	1 cut(s)	1531
MseI	TTAA	5 cut(s)	789, 1281, 1355, 1383, 1635
MslI	CAYNNNNRTG	2 cut(s)	275, 1399
Msp20I	TGGCCA	1 cut(s)	1531
MspA1I	CMGCKG	2 cut(s)	234, 2023
MspI	CCGG	7 cut(s)	273, 290, 863, 882, 905, 932, 1684
MspR9I	CCNGG	6 cut(s)	387, 675, 690, 905, 906, 933
MunI	CAATTG	3 cut(s)	713, 830, 1581
MvaI	CCWGG	3 cut(s)	387, 675, 690
MvnI	CGCG	3 cut(s)	1049, 1178, 1195
NarI	GGCGCC	1 cut(s)	528
NciI	CCSGG	3 cut(s)	905, 906, 933
NdeI	CATATG	1 cut(s)	759
NdeII	GATC	3 cut(s)	514, 1152, 2029
NlaIII	CATG	5 cut(s)	13, 503, 1295, 1547, 1985
NlaIV	GGNNCC	3 cut(s)	288, 529, 895
NmeAIII	GCCGAG	1 cut(s)	1969
NmuCI	GTSAC	3 cut(s)	381, 422, 1679
OliI	CACNNNNGTG	1 cut(s)	275
PagI	TCATGA	1 cut(s)	499
PciSI	GCTCTTC	1 cut(s)	1411
PcsI	WCGNNNNNNNCGW	1 cut(s)	1422
PfeI	GAWTC	5 cut(s)	65, 769, 928, 1265, 1748
PflMI	CCANNNNNTGG	3 cut(s)	347, 443, 1544
PleI	GAGTC	4 cut(s)	388, 1876, 1942, 1957
PluTI	GGCGCC	1 cut(s)	531
PpsI	GAGTC	4 cut(s)	388, 1876, 1942, 1957
Psp124BI	GAGCTC	1 cut(s)	1473
Psp6I	CCWGG	3 cut(s)	385, 673, 688
PspGI	CCWGG	3 cut(s)	385, 673, 688
PspN4I	GGNNCC	3 cut(s)	288, 529, 895
PspPI	GGNCC	5 cut(s)	100, 338, 893, 907, 1621
PstNI	CAGNNNCTG	1 cut(s)	1568
PsuI	RGATCY	1 cut(s)	2029
RsaI	GTAC	2 cut(s)	957, 1802
RsaNI	GTAC	2 cut(s)	956, 1801
RseI	CAYNNNNRTG	2 cut(s)	275, 1399
SacI	GAGCTC	1 cut(s)	1473
SapI	GCTCTTC	1 cut(s)	1411
SaqAI	TTAA	5 cut(s)	789, 1281, 1355, 1383, 1635
Sau3AI	GATC	3 cut(s)	514, 1152, 2029
Sau96I	GGNCC	5 cut(s)	100, 338, 893, 907, 1621
SchI	GAGTC	4 cut(s)	389, 1876, 1943, 1957
ScrFI	CCNGG	6 cut(s)	387, 675, 690, 905, 906, 933
SduI	GDGCHC	3 cut(s)	159, 1473, 2013
SexAI	ACCWGGT	1 cut(s)	385
SfaNI	GCATC	3 cut(s)	1401, 1747, 1768
SfcI	CTRYAG	1 cut(s)	252
SfoI	GGCGCC	1 cut(s)	529
SgrAI	CRCCGGYG	1 cut(s)	272
SinI	GGWCC	3 cut(s)	338, 893, 1621
SmaI	CCCGGG	1 cut(s)	906
SmiMI	CAYNNNNRTG	2 cut(s)	275, 1399
SmlI	CTYRAG	3 cut(s)	1440, 1451, 1735
SmoI	CTYRAG	3 cut(s)	1440, 1451, 1735
SsiI	CCGC	9 cut(s)	234, 237, 281, 284, 1047, 1195, 1798, 2023, 2053
SspDI	GGCGCC	1 cut(s)	527
SspMI	CTAG	2 cut(s)	320, 1775
SstI	GAGCTC	1 cut(s)	1473
StyD4I	CCNGG	6 cut(s)	385, 673, 688, 903, 904, 931
StyI	CCWWGG	1 cut(s)	1665
TaaI	ACNGT	3 cut(s)	643, 1730, 1998
TaiI	ACGT	1 cut(s)	824
TaqI	TCGA	5 cut(s)	1155, 1299, 1409, 1425, 1491
TauI	GCSGC	5 cut(s)	237, 284, 287, 1049, 1198
TfiI	GAWTC	5 cut(s)	65, 769, 928, 1265, 1748
Tru1I	TTAA	5 cut(s)	789, 1281, 1355, 1383, 1635
Tru9I	TTAA	5 cut(s)	789, 1281, 1355, 1383, 1635
TscAI	CASTG	5 cut(s)	157, 822, 1396, 1684, 1733
TseFI	GTSAC	3 cut(s)	381, 422, 1679
Tsp45I	GTSAC	3 cut(s)	381, 422, 1679
TspDTI	ATGAA	7 cut(s)	17, 488, 782, 1100, 1109, 1434, 1532
TspGWI	ACGGA	3 cut(s)	993, 1158, 1975
TspMI	CCCGGG	1 cut(s)	904
TspRI	CASTG	5 cut(s)	157, 822, 1396, 1684, 1733
Van91I	CCANNNNNTGG	3 cut(s)	347, 443, 1544
VpaK11BI	GGWCC	3 cut(s)	338, 893, 1621
XagI	CCTNNNNNAGG	1 cut(s)	1669
XapI	RAATTY	4 cut(s)	559, 615, 1421, 1597
XbaI	TCTAGA	1 cut(s)	319
XmaI	CCCGGG	1 cut(s)	904
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	2 cut(s)	320, 1775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.