Rroxscaffold_3G00254180

Scarecrow-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002481
Physical Location & Seq
Reverse (-)
48309402 .. 48312984
3583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254180.1

Sequence Viewer

Length: 2205 bp
ATGAGAAGAAGCCCGAGCCCACCCACTTCGGCATCCACTCTCTCCTCCTCCTTCAACGGCGGAAACGGAAACGGCAACACCACCACGCCGCTTCTGCAGGACACTTCGCCGGTGGGACCTGAGCCCGACACGGCGGCGGCGCGCAGCAGCAGCAGCAAGGATGAGTGGACCTGCGAGCTTCAGTCGATTCCCAGCGGCGGTCTGGAGGCCGTGACCGGATCGGGCGGCGGGAGATGCGGCGGGCTTGGGTTGGAGGACTGGGAGACGATGCTCTCCGAAACGGCGGCGTCTCCGGGTCAAGACCAGTCGCTGCTCCGGTGGATCTCGGGCGACGTGGACGAGGCGTCGTTTGGGCTAAAGCAGCTGTTGCAGAGTGGGAACAACAGTAACTCTATTGAGTTTGACGGCAATGCGGGTCTGGGAATGGTCGATCAGGGTTCCGGTTTCGACCACATCGGGAGCAGCGTTTCCGGTCCCAATTTGGGGTTCTCCGGCGGTTCTGGTTTCAATGGGAAAATGGGTTTTGTGCCCAGCTCTTCTGGGCCGCTGAATTACAAGGTTTCAAATGTTGGGATGATGAACAATAATGGCGGCGGCAACAACAACAACAACTCCAATTTCGCCAATTCAGCACTTCCAGTTTCGCTGCCTCATGGAATGGTTTATCAGAATCACCAGCAGTTTGAGAACCCAGATGAGAAGCCACAGATTCTGAACCCACAGCTGTTCATGAACCAGCACCAGTCTCAGCTCCCTCATCAAAATCCAAACTTTTTCATGCCAGTGACTTATGCTCAGCAGGAGCAGCACTTTCTTCCGTCCCAGCCCAAGCGCCACAACCCAGGTGGAGGCGGTGGAGGACTGGACCCGAATTCTCAGATCCACCAAAAGGTACAATATTCGGATCCGGGTCATGAGTTTCTGCTCAGAAAGCAACACCTTCATCAGCAGCAGCAGCAGCAGCAGCAGCCCCATTTTGGTAATTTCCCTCTCGGAATGCAGTTCCTTCCTCAGCAGCACCACACTCAACCGAGGCCGGTAGTGGTGCCCAAGCAGAAGGTGGGTGGCGAAGAAATGGCGGCGGCGGCTCACCAGAACCGTAGTTTGCTGGACCAGCTCTATAAGGCCGCAGAAATGGTAGGTACTGGGAACTTCTCACACGCGCAGGCGATATTGGCGCGGCTCAATCACCAGCTCTCCCCTGTTGGAAAGCCCCATCAGCGGGCTGCTTTCTATTTCAAGGAGGCTTTGCAACTCCTCCTCCTTATGAACAACCCAGCAACCTCTCCTCCACCAAGAACCCCGACCCCTTTTGATGTTATCTTCAAAATGGGGGCTTACAAAGTCTACTCTGAAGTGTCTCCATTGATTCAGTTTGTCAATTTTACTTGCAACCAGGCTCTACTTGAGGCTGTATCAGAAGCTGATCAGATTCACATTGTTGATTTTGATATAGGGTTTGGTGCTCACTGGGCCTCCTTTATGCAGGAGCTCCCATTGAGGAACAGGGGTGGCACTTCCCCCTTTCTCAAAATCACTGCTTTTGCCTCCCCTTCTACTCATCACACAGTTGAGCTTAATCTTATGCGTGATAATTTAACCCAATTTGCTGATGAGATTGGCTTAGGTTTTGAGCTTGAAGTAGTTAACATTGATTTGTTGGACCAAAACTCATACTCACTGCCCTTTTTCCGAGCTAATGATAATGAGGCAGTTGCTGTGAATTTCCCCATTTGGTCTAGTTCGAATCAACCGTCTGCTTTGCCCAATCTCCTTCGATTTGTTAAACAGCTATCTCCCAAAATTGTGGTGTCTTTGGATAGAGGGTGTGACAGGAGTGACCTTCCATTCCCACAGCACTTTCTGCAGGCCCTCCAATCCTACATAAACCTCTTGGAATCTCTTGATGCGGTTAATGTAACTTCGGATGCTGTGAACAAGATTGAGAGGTTCCTCCTTCAGCCTAAGATTGAAAGCACTGTTTTGGGGCGTCTCCGAACCCCTGACAAAATGCCCCTATGGAAAACGCTCTTTGCCTCAGCTGGTTTCACTCCATTATCCTTCAGTAACTTTACGGAGACTCAGGCAGAATGTGTGGTCAAGAGGAGTACAGCAAGAGGGTTTCATGTCGAGAAGCGTCAAGAGTCACTTGTGCTATGCTGGCAGCGCCGAGAGCTCATCTCAGCTTCAGCTTGGAGGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

734

Amino Acids

80.41

Weight (kDa)

6.11

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 370 - 733 1.7e-93 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 1045
AccI GTMKAC 1 cut(s) 1347
AccII CGCG 3 cut(s) 142, 1163, 1180
AclWI GGATC 5 cut(s) 226, 329, 874, 899, 912
AcsI RAATTY 2 cut(s) 871, 1723
AcuI CTGAAG 5 cut(s) 164, 1374, 1943, 2047, 2172
AcyI GRCGYC 3 cut(s) 287, 344, 1990
AfaI GTAC 3 cut(s) 894, 1144, 2110
AfiI CCNNNNNNNGG 8 cut(s) 197, 482, 483, 848, 889, 977, 1221, 1222
AgsI TTSAA 7 cut(s) 55, 508, 564, 1240, 1327, 1640, 1973
AhdI GACNNNNNGTC 1 cut(s) 343
AjiI CACGTC 1 cut(s) 334
AjnI CCWGG 2 cut(s) 841, 1395
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
Alw21I GWGCWC 3 cut(s) 1468, 1494, 2178
Alw26I GTCTC 6 cut(s) 257, 294, 750, 1365, 1997, 2072
AlwI GGATC 5 cut(s) 226, 329, 874, 899, 912
AlwNI CAGNNNCTG 4 cut(s) 310, 712, 1424, 1718
Ama87I CYCGRG 2 cut(s) 13, 325
AoxI GGCC 6 cut(s) 207, 542, 1034, 1125, 1473, 1869
ApoI RAATTY 2 cut(s) 871, 1723
ArsI GACNNNNNNTTYG 2 cut(s) 1739, 1771
AspLEI GCGC 6 cut(s) 142, 144, 834, 1165, 1180, 2169
AspS9I GGNCC 9 cut(s) 116, 168, 473, 542, 865, 1111, 1473, 1663, 1870
AsuC2I CCSGG 2 cut(s) 294, 909
AsuHPI GGTGA 3 cut(s) 665, 1082, 1181
AsuII TTCGAA 1 cut(s) 1745
AvaI CYCGRG 2 cut(s) 13, 325
AvaII GGWCC 6 cut(s) 116, 168, 473, 865, 1111, 1663
BaeGI GKGCMC 2 cut(s) 531, 1050
BamHI GGATCC 1 cut(s) 904
BanI GGYRCC 1 cut(s) 1045
BanII GRGCYC 4 cut(s) 20, 126, 1494, 2178
Bbv12I GWGCWC 3 cut(s) 1468, 1494, 2178
BbvCI CCTCAGC 2 cut(s) 1011, 2038
BccI CCATC 1 cut(s) 1224
BceAI ACGGC 6 cut(s) 73, 88, 147, 194, 297, 421
BciT130I CCWGG 2 cut(s) 843, 1397
BclI TGATCA 1 cut(s) 1426
BcnI CCSGG 2 cut(s) 294, 909
BcoDI GTCTC 6 cut(s) 257, 294, 750, 1365, 1997, 2072
BfaI CTAG 1 cut(s) 1740
BfmI CTRYAG 2 cut(s) 95, 1865
BfoI RGCGCY 2 cut(s) 835, 2170
BfuAI ACCTGC 1 cut(s) 179
BlpI GCTNAGC 1 cut(s) 795
Bme1390I CCNGG 4 cut(s) 294, 843, 909, 1397
Bme18I GGWCC 6 cut(s) 116, 168, 473, 865, 1111, 1663
BmeRI GACNNNNNGTC 1 cut(s) 343
BmeT110I CYCGRG 2 cut(s) 13, 325
BmgBI CACGTC 1 cut(s) 334
BmgT120I GGNCC 9 cut(s) 116, 168, 473, 542, 865, 1111, 1473, 1663, 1870
BmiI GGNNCC 7 cut(s) 117, 439, 475, 867, 906, 1047, 1952
BmrFI CCNGG 4 cut(s) 294, 843, 909, 1397
BmrI ACTGGG 3 cut(s) 268, 1155, 1480
BmsI GCATC 5 cut(s) 41, 224, 258, 1897, 1918
BmuI ACTGGG 3 cut(s) 268, 1155, 1480
BplI GAGNNNNNCTC 2 cut(s) 2165, 2197
BpmI CTGGAG 1 cut(s) 224
Bpu10I CCTNAGC 4 cut(s) 120, 1011, 1624, 2038
Bpu1102I GCTNAGC 1 cut(s) 795
Bpu14I TTCGAA 1 cut(s) 1745
BpuEI CTTGAG 1 cut(s) 1427
BpuMI CCSGG 2 cut(s) 294, 909
BsaHI GRCGYC 3 cut(s) 287, 344, 1990
BsaJI CCNNGG 2 cut(s) 841, 1031
BsaWI WCCGGW 4 cut(s) 215, 315, 440, 470
Bsc4I CCNNNNNNNGG 8 cut(s) 197, 482, 483, 848, 889, 977, 1221, 1222
Bse118I RCCGGY 2 cut(s) 109, 1036
Bse1I ACTGG 8 cut(s) 263, 304, 638, 742, 782, 867, 1150, 1475
Bse3DI GCAATG 1 cut(s) 415
BseBI CCWGG 2 cut(s) 843, 1397
BseDI CCNNGG 2 cut(s) 841, 1031
BseGI GGATG 4 cut(s) 32, 166, 579, 1933
BseLI CCNNNNNNNGG 8 cut(s) 197, 482, 483, 848, 889, 977, 1221, 1222
BseMI GCAATG 1 cut(s) 415
BseMII CTCAG 9 cut(s) 111, 761, 809, 890, 940, 1025, 2052, 2096, 2196
BseNI ACTGG 8 cut(s) 263, 304, 638, 742, 782, 867, 1150, 1475
BsePI GCGCGC 1 cut(s) 140
BseRI GAGGAG 6 cut(s) 34, 37, 1247, 1250, 1278, 2119
BseSI GKGCMC 2 cut(s) 531, 1050
BseYI CCCAGC 4 cut(s) 191, 530, 822, 1276
Bsh1236I CGCG 3 cut(s) 142, 1163, 1180
BshFI GGCC 6 cut(s) 209, 544, 1036, 1127, 1475, 1871
BshNI GGYRCC 1 cut(s) 1045
BsiHKAI GWGCWC 3 cut(s) 1468, 1494, 2178
BsiHKCI CYCGRG 2 cut(s) 13, 325
BsiSI CCGG 9 cut(s) 110, 216, 293, 316, 441, 471, 492, 908, 1037
BslFI GGGAC 3 cut(s) 129, 459, 805
BslI CCNNNNNNNGG 8 cut(s) 197, 482, 483, 848, 889, 977, 1221, 1222
BsmAI GTCTC 6 cut(s) 257, 294, 750, 1365, 1997, 2072
BsmBI CGTCTC 3 cut(s) 257, 294, 1997
BsmFI GGGAC 3 cut(s) 129, 459, 805
BsmI GAATGC 1 cut(s) 1002
BsnI GGCC 6 cut(s) 209, 544, 1036, 1127, 1475, 1871
BsoBI CYCGRG 2 cut(s) 13, 325
Bsp119I TTCGAA 1 cut(s) 1745
Bsp1286I GDGCHC 7 cut(s) 20, 126, 531, 1050, 1468, 1494, 2178
Bsp143I GATC 6 cut(s) 218, 321, 430, 879, 904, 1426
Bsp1720I GCTNAGC 1 cut(s) 795
BspANI GGCC 6 cut(s) 209, 544, 1036, 1127, 1475, 1871
BspCNI CTCAG 9 cut(s) 112, 760, 808, 889, 939, 1024, 2051, 2095, 2195
BspFNI CGCG 3 cut(s) 142, 1163, 1180
BspHI TCATGA 2 cut(s) 729, 913
BspLI GGNNCC 7 cut(s) 117, 439, 475, 867, 906, 1047, 1952
BspMAI CTGCAG 2 cut(s) 99, 1869
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 5 cut(s) 226, 329, 874, 899, 912
BspQI GCTCTTC 1 cut(s) 541
BspT104I TTCGAA 1 cut(s) 1745
BspT107I GGYRCC 1 cut(s) 1045
BsrDI GCAATG 1 cut(s) 415
BsrFI RCCGGY 2 cut(s) 109, 1036
BsrI ACTGG 8 cut(s) 263, 304, 638, 742, 782, 867, 1150, 1475
BssAI RCCGGY 2 cut(s) 109, 1036
BssECI CCNNGG 2 cut(s) 841, 1031
BssHII GCGCGC 1 cut(s) 140
BssMI GATC 6 cut(s) 218, 321, 430, 879, 904, 1426
BssNI GRCGYC 3 cut(s) 287, 344, 1990
Bst2UI CCWGG 2 cut(s) 843, 1397
Bst4CI ACNGT 5 cut(s) 386, 1100, 1570, 1755, 1981
Bst6I CTCTTC 1 cut(s) 541
BstACI GRCGYC 3 cut(s) 287, 344, 1990
BstAPI GCANNNNNTGC 2 cut(s) 367, 1864
BstBI TTCGAA 1 cut(s) 1745
BstC8I GCNNGC 7 cut(s) 142, 176, 242, 1167, 1224, 1869, 2162
BstF5I GGATG 4 cut(s) 32, 166, 579, 1933
BstFNI CGCG 3 cut(s) 142, 1163, 1180
BstH2I RGCGCY 2 cut(s) 835, 2170
BstHHI GCGC 6 cut(s) 142, 144, 834, 1165, 1180, 2169
BstKTI GATC 6 cut(s) 221, 324, 433, 882, 907, 1429
BstMAI GTCTC 6 cut(s) 257, 294, 750, 1365, 1997, 2072
BstMBI GATC 6 cut(s) 218, 321, 430, 879, 904, 1426
BstNI CCWGG 2 cut(s) 843, 1397
BstSCI CCNGG 4 cut(s) 292, 841, 907, 1395
BstSFI CTRYAG 2 cut(s) 95, 1865
BstSLI GKGCMC 2 cut(s) 531, 1050
BstUI CGCG 3 cut(s) 142, 1163, 1180
BstX2I RGATCY 3 cut(s) 321, 879, 904
BstXI CCANNNNNNTGG 1 cut(s) 1807
BstYI RGATCY 3 cut(s) 321, 879, 904
BsuRI GGCC 6 cut(s) 209, 544, 1036, 1127, 1475, 1871
BtrI CACGTC 1 cut(s) 334
BtsCI GGATG 4 cut(s) 32, 166, 579, 1933
BtsI GCAGTG 2 cut(s) 1536, 1679
BtsIMutI CAGTG 5 cut(s) 789, 1468, 1536, 1679, 1977
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 7 cut(s) 142, 176, 242, 1167, 1224, 1869, 2162
CaiI CAGNNNCTG 4 cut(s) 310, 712, 1424, 1718
CciI TCATGA 2 cut(s) 729, 913
CfoI GCGC 6 cut(s) 142, 144, 834, 1165, 1180, 2169
Cfr10I RCCGGY 2 cut(s) 109, 1036
Cfr13I GGNCC 9 cut(s) 116, 168, 473, 542, 865, 1111, 1473, 1663, 1870
CseI GACGC 4 cut(s) 276, 333, 1979, 2126
Csp6I GTAC 3 cut(s) 893, 1143, 2109
CspCI CAANNNNNGTGG 2 cut(s) 826, 861
CviAII CATG 5 cut(s) 653, 730, 778, 914, 2126
CviQI GTAC 3 cut(s) 893, 1143, 2109
DpnI GATC 6 cut(s) 220, 323, 432, 881, 906, 1428
DpnII GATC 6 cut(s) 218, 321, 430, 879, 904, 1426
DriI GACNNNNNGTC 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 541
Eam1105I GACNNNNNGTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 541
EciI GGCGGA 1 cut(s) 75
Ecl136II GAGCTC 2 cut(s) 1492, 2176
Eco24I GRGCYC 4 cut(s) 20, 126, 1494, 2178
Eco47I GGWCC 6 cut(s) 116, 168, 473, 865, 1111, 1663
Eco53kI GAGCTC 2 cut(s) 1492, 2176
Eco57I CTGAAG 5 cut(s) 164, 1374, 1943, 2047, 2172
Eco88I CYCGRG 2 cut(s) 13, 325
EcoICRI GAGCTC 2 cut(s) 1492, 2176
EcoO109I RGGNCCY 2 cut(s) 116, 1870
EcoRI GAATTC 1 cut(s) 871
EcoRII CCWGG 2 cut(s) 841, 1395
EcoT38I GRGCYC 4 cut(s) 20, 126, 1494, 2178
Esp3I CGTCTC 3 cut(s) 257, 294, 1997
FaeI CATG 5 cut(s) 656, 733, 781, 917, 2129
FalI AAGNNNNNCTT 2 cut(s) 2133, 2165
FaqI GGGAC 3 cut(s) 129, 459, 805
FatI CATG 5 cut(s) 652, 729, 777, 913, 2125
FauI CCCGC 4 cut(s) 221, 233, 406, 1215
FbaI TGATCA 1 cut(s) 1426
FblI GTMKAC 1 cut(s) 1347
FokI GGATG 4 cut(s) 19, 173, 586, 1940
FriOI GRGCYC 4 cut(s) 20, 126, 1494, 2178
FspBI CTAG 1 cut(s) 1740
GlaI GCGC 6 cut(s) 141, 143, 833, 1164, 1179, 2168
GsaI CCCAGC 4 cut(s) 195, 534, 826, 1280
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 2 cut(s) 835, 2170
HaeIII GGCC 6 cut(s) 209, 544, 1036, 1127, 1475, 1871
HapII CCGG 9 cut(s) 110, 216, 293, 316, 441, 471, 492, 908, 1037
HgaI GACGC 4 cut(s) 276, 333, 1979, 2126
HhaI GCGC 6 cut(s) 142, 144, 834, 1165, 1180, 2169
Hin1I GRCGYC 3 cut(s) 287, 344, 1990
Hin1II CATG 5 cut(s) 656, 733, 781, 917, 2129
Hin6I GCGC 6 cut(s) 140, 142, 832, 1163, 1178, 2167
HinP1I GCGC 6 cut(s) 140, 142, 832, 1163, 1178, 2167
HincII GTYRAC 1 cut(s) 1648
HindII GTYRAC 1 cut(s) 1648
HinfI GANTC 9 cut(s) 187, 670, 709, 1369, 1432, 1747, 1898, 2080, 2144
HpaI GTTAAC 1 cut(s) 1648
HpaII CCGG 9 cut(s) 110, 216, 293, 316, 441, 471, 492, 908, 1037
HphI GGTGA 3 cut(s) 665, 1082, 1181
Hpy166II GTNNAC 5 cut(s) 168, 337, 1348, 1648, 1936
Hpy188III TCNNGA 9 cut(s) 203, 299, 457, 730, 914, 1904, 2101, 2131, 2141
Hpy8I GTNNAC 5 cut(s) 168, 337, 1348, 1648, 1936
Hpy99I CGWCG 2 cut(s) 335, 349
HpyAV CCTTC 9 cut(s) 61, 950, 1016, 1051, 1563, 1784, 1853, 1967, 2071
HpyCH4III ACNGT 5 cut(s) 386, 1100, 1570, 1755, 1981
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 7 cut(s) 97, 370, 1000, 1252, 1392, 1486, 1867
HpySE526I ACGT 1 cut(s) 333
Hsp92I GRCGYC 3 cut(s) 287, 344, 1990
Hsp92II CATG 5 cut(s) 656, 733, 781, 917, 2129
HspAI GCGC 6 cut(s) 140, 142, 832, 1163, 1178, 2167
Ksp22I TGATCA 1 cut(s) 1426
KspAI GTTAAC 1 cut(s) 1648
Kzo9I GATC 6 cut(s) 218, 321, 430, 879, 904, 1426
LguI GCTCTTC 1 cut(s) 541
LmnI GCTCC 6 cut(s) 318, 459, 756, 802, 1489, 1497
LweI GCATC 5 cut(s) 41, 224, 258, 1897, 1918
MaeI CTAG 1 cut(s) 1740
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 8 cut(s) 211, 386, 784, 1829, 1838, 1918, 2066, 2145
MalI GATC 6 cut(s) 220, 323, 432, 881, 906, 1428
MboI GATC 6 cut(s) 218, 321, 430, 879, 904, 1426
MboII GAAGA 5 cut(s) 18, 528, 806, 1082, 1315
MflI RGATCY 3 cut(s) 321, 879, 904
MhlI GDGCHC 7 cut(s) 20, 126, 531, 1050, 1468, 1494, 2178
MlyI GAGTC 2 cut(s) 2074, 2153
MmeI TCCRAC 3 cut(s) 231, 1186, 1641
MseI TTAA 5 cut(s) 1578, 1598, 1647, 1785, 1914
MslI CAYNNNNRTG 1 cut(s) 782
MspA1I CMGCKG 6 cut(s) 195, 364, 547, 724, 1222, 2042
MspI CCGG 9 cut(s) 110, 216, 293, 316, 441, 471, 492, 908, 1037
MspR9I CCNGG 4 cut(s) 294, 843, 909, 1397
Mva1269I GAATGC 1 cut(s) 1002
MvaI CCWGG 2 cut(s) 843, 1397
MvnI CGCG 3 cut(s) 142, 1163, 1180
NciI CCSGG 2 cut(s) 294, 909
NdeII GATC 6 cut(s) 218, 321, 430, 879, 904, 1426
NlaIII CATG 5 cut(s) 656, 733, 781, 917, 2129
NlaIV GGNNCC 7 cut(s) 117, 439, 475, 867, 906, 1047, 1952
NmeAIII GCCGAG 1 cut(s) 2195
NmuCI GTSAC 5 cut(s) 211, 784, 1829, 1838, 2145
NspV TTCGAA 1 cut(s) 1745
PagI TCATGA 2 cut(s) 729, 913
PauI GCGCGC 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 541
PcsI WCGNNNNNNNCGW 2 cut(s) 462, 1751
PctI GAATGC 1 cut(s) 1002
PfeI GAWTC 7 cut(s) 187, 670, 709, 1369, 1432, 1747, 1898
PleI GAGTC 2 cut(s) 2074, 2152
PpsI GAGTC 2 cut(s) 2074, 2152
PpuMI RGGWCCY 1 cut(s) 116
Psp124BI GAGCTC 2 cut(s) 1494, 2178
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 841, 1395
PspFI CCCAGC 4 cut(s) 191, 530, 822, 1276
PspGI CCWGG 2 cut(s) 841, 1395
PspN4I GGNNCC 7 cut(s) 117, 439, 475, 867, 906, 1047, 1952
PspPI GGNCC 9 cut(s) 116, 168, 473, 542, 865, 1111, 1473, 1663, 1870
PspPPI RGGWCCY 1 cut(s) 116
PstI CTGCAG 2 cut(s) 99, 1869
PstNI CAGNNNCTG 4 cut(s) 310, 712, 1424, 1718
PsuI RGATCY 3 cut(s) 321, 879, 904
PteI GCGCGC 1 cut(s) 140
PvuII CAGCTG 3 cut(s) 364, 724, 2042
RsaI GTAC 3 cut(s) 894, 1144, 2110
RsaNI GTAC 3 cut(s) 893, 1143, 2109
RseI CAYNNNNRTG 1 cut(s) 782
SacI GAGCTC 2 cut(s) 1494, 2178
SapI GCTCTTC 1 cut(s) 541
SaqAI TTAA 5 cut(s) 1578, 1598, 1647, 1785, 1914
Sau3AI GATC 6 cut(s) 218, 321, 430, 879, 904, 1426
Sau96I GGNCC 9 cut(s) 116, 168, 473, 542, 865, 1111, 1473, 1663, 1870
SchI GAGTC 2 cut(s) 2074, 2153
ScrFI CCNGG 4 cut(s) 294, 843, 909, 1397
SduI GDGCHC 7 cut(s) 20, 126, 531, 1050, 1468, 1494, 2178
SfaNI GCATC 5 cut(s) 41, 224, 258, 1897, 1918
SfcI CTRYAG 2 cut(s) 95, 1865
SfuI TTCGAA 1 cut(s) 1745
SgrAI CRCCGGYG 1 cut(s) 109
SinI GGWCC 6 cut(s) 116, 168, 473, 865, 1111, 1663
SmiMI CAYNNNNRTG 1 cut(s) 782
SmlI CTYRAG 1 cut(s) 1406
SmoI CTYRAG 1 cut(s) 1406
SspI AATATT 1 cut(s) 899
SspMI CTAG 1 cut(s) 1740
SstI GAGCTC 2 cut(s) 1494, 2178
StyD4I CCNGG 4 cut(s) 292, 841, 907, 1395
TaaI ACNGT 5 cut(s) 386, 1100, 1570, 1755, 1981
TaiI ACGT 1 cut(s) 336
TaqI TCGA 6 cut(s) 185, 429, 447, 1745, 1777, 2130
TatI WGTACW 1 cut(s) 2108
TfiI GAWTC 7 cut(s) 187, 670, 709, 1369, 1432, 1747, 1898
Tru1I TTAA 5 cut(s) 1578, 1598, 1647, 1785, 1914
Tru9I TTAA 5 cut(s) 1578, 1598, 1647, 1785, 1914
TscAI CASTG 5 cut(s) 789, 1475, 1543, 1686, 1984
TseFI GTSAC 5 cut(s) 211, 784, 1829, 1838, 2145
Tsp45I GTSAC 5 cut(s) 211, 784, 1829, 1838, 2145
TspDTI ATGAA 7 cut(s) 593, 718, 746, 766, 932, 1283, 2114
TspGWI ACGGA 3 cut(s) 81, 807, 2090
TspRI CASTG 5 cut(s) 789, 1475, 1543, 1686, 1984
VpaK11BI GGWCC 6 cut(s) 116, 168, 473, 865, 1111, 1663
XapI RAATTY 2 cut(s) 871, 1723
XcmI CCANNNNNNNNNTGG 3 cut(s) 199, 842, 1057
XmiI GTMKAC 1 cut(s) 1347
XspI CTAG 1 cut(s) 1740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.