Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8449587.1

Orthogroup ID

OG0002481

Physical Location & Seq

Genomic Coordinates Reverse (-)

457 .. 1629

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8449587.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atgttagccgcgaaggacaaaatggtgaacaatctggaaggggataaagaattgatgaacaaccaccagcttcatcaagcgatagttgaccagcttgtcaatgcagcagagctgatcgaaacaggcaatccgttactcgcgcaagggatattggcgcggctcaatcaacagctctctcctattggtaagccttttcaaagggctgctttttatttcaaggaggccttggaattactacttaacatgaacaactctcactcttctgctaatttgtcaccttttagcctcatttacaagattgctgcatataaatcattctctgaaatctcaccagttctccaatttgccaactttacttgcaaccaagccatccttgaatctgtggaaggctttaatcgtgtccatgttatcgattttgatattggctatggtgggcaatgggcttcttttatgcaagaggtggctttaagaaatggtggttctcctccttctctcaaaatcactgcatttgtatgctcttcgatgcacgatgaattcgagctggctttcactcaagaaaacctcaagaactttgcttgtgagctcaatttggcatttgaacttgaaattgtaagtattgaggcattgaactctggttcttggccattaccacttcatggctcagagggtgtggcagttgctgtcaatcttccaattgcttccttcttgaattcccatttatcgcttcctttggtcctgcgctttgttaagcagctttctcccaaaattgtggtatccttggaaaggggcagtgaccggactgatatcccatttccccaccaaatcattcaagccgttcactgttactcaagccttcttgaatcattagatgctgtaaatgcaaacctagatgccctgcaaaagattgagcggtacttgctccaaccaagcattgaaaagattgtaatgggctgccatctttctcctaaaaggacaccgacaccttcttggaggactctgtttttgtcatctgggttctccccgttgacattcagcaatttcaccgagtcccaagccgattgcttggtgcaacggactccagttgggggtttccatgttgagaagagacagtcttcgcttgtgctctgctggcagcggaaggatctcatctcagcctcagggtggcggtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007623 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009889 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048511 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0060560 GO:0065007 GO:0071695 GO:0071840 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

390

Amino Acids

43.29

Weight (kDa)

6.01

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00150
fragaria_vesca	FvH4_5g00020 FvH4_5g00020 FvH4_7g11120
malus_domestica	MD00G1043300.v1.1 MD02G1210200.v1.1 MD04G1088100.v1.1 MD07G1115800.v1.1
prunus_persica	Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.5G072300_v2.0.a1 Prupe.5G072300_v2.0.a1
pyrus_communis	pycom02g17200 pycom06g05130 pycom07g10860
rosa_chinensis	RchiOBHm_Chr1g0349141 RchiOBHm_Chr7g0202931
rosa_laevigata	RLG00000003564 RLG00000028602
rosa_multiflora	Rmu_co8366677.1_g000001 Rmu_co8449587.1_g000001 Rmu_sc0008159.1_g000016 Rmu_ssc0000150.1_g000020
rosa_roxburghii	Rroxscaffold_3G00254180 Rroxscaffold_4G00306070
rosa_rugosa	Rorug01G0200700 Rorug07G0074000
rosa_samantha	Rh1AG218400 Rh1BG183800 Rh1CG202900 Rh1DG213600 Rh7AG201800 Rh7BG202000 Rh7CG213100 Rh7DG208800
rosa_wichuraiana	Rw1G018550 Rw7G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccBSI	CCGCTC	1 cut(s)	910
AccII	CGCG	3 cut(s)	11, 140, 157
AciI	CCGC	5 cut(s)	9, 157, 910, 1135, 1165
AclWI	GGATC	1 cut(s)	1149
AcoI	YGGCCR	1 cut(s)	641
AcsI	RAATTY	2 cut(s)	533, 709
AfaI	GTAC	1 cut(s)	914
AfiI	CCNNNNNNNGG	4 cut(s)	656, 783, 1085, 1161
AluBI	AGCT	7 cut(s)	70, 94, 112, 172, 541, 583, 754
AluI	AGCT	7 cut(s)	70, 94, 112, 172, 541, 583, 754
Alw21I	GWGCWC	2 cut(s)	585, 1125
Alw26I	GTCTC	1 cut(s)	1099
AlwI	GGATC	1 cut(s)	1149
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	2 cut(s)	222, 641
ApeKI	GCWGC	6 cut(s)	104, 203, 302, 751, 951, 1132
ApoI	RAATTY	2 cut(s)	533, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	985, 1017
AspLEI	GCGC	3 cut(s)	142, 157, 741
AspS9I	GGNCC	1 cut(s)	733
AsuHPI	GGTGA	4 cut(s)	37, 267, 321, 1033
AvaII	GGWCC	1 cut(s)	733
AxyI	CCTNAGG	1 cut(s)	1156
BalI	TGGCCA	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	1104
Bbv12I	GWGCWC	2 cut(s)	585, 1125
BbvI	GCAGC	6 cut(s)	116, 190, 289, 763, 938, 1144
BccI	CCATC	2 cut(s)	377, 963
BceAI	ACGGC	1 cut(s)	818
BciVI	GTATCC	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	1099
BfaI	CTAG	1 cut(s)	887
BfuI	GTATCC	1 cut(s)	784
BisI	GCNGC	8 cut(s)	9, 105, 158, 204, 303, 752, 952, 1133
BlsI	GCNGC	8 cut(s)	10, 106, 159, 205, 304, 753, 953, 1134
Bme18I	GGWCC	1 cut(s)	733
BmgT120I	GGNCC	1 cut(s)	733
BmsI	GCATC	3 cut(s)	513, 859, 880
BpiI	GAAGAC	1 cut(s)	1104
BpmI	CTGGAG	1 cut(s)	1062
BpuEI	CTTGAG	3 cut(s)	537, 548, 832
Bsa29I	ATCGAT	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	225, 777
BsaWI	WCCGGW	1 cut(s)	795
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	4 cut(s)	656, 783, 1085, 1161
Bse1I	ACTGG	2 cut(s)	332, 1079
Bse21I	CCTNAGG	1 cut(s)	1156
Bse3DI	GCAATG	1 cut(s)	443
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	225, 777
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	4 cut(s)	656, 783, 1085, 1161
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	3 cut(s)	675, 1164, 1170
BseNI	ACTGG	2 cut(s)	332, 1079
BseRI	GAGGAG	1 cut(s)	474
BseXI	GCAGC	6 cut(s)	116, 190, 289, 763, 938, 1144
Bsh1236I	CGCG	3 cut(s)	11, 140, 157
BshFI	GGCC	2 cut(s)	224, 643
BshVI	ATCGAT	1 cut(s)	411
BsiHKAI	GWGCWC	2 cut(s)	585, 1125
BsiSI	CCGG	1 cut(s)	796
BslFI	GGGAC	1 cut(s)	1033
BslI	CCNNNNNNNGG	4 cut(s)	656, 783, 1085, 1161
BsmAI	GTCTC	1 cut(s)	1099
BsmFI	GGGAC	1 cut(s)	1033
BsnI	GGCC	2 cut(s)	224, 643
Bsp1286I	GDGCHC	2 cut(s)	585, 1125
Bsp143I	GATC	2 cut(s)	114, 1141
BspACI	CCGC	5 cut(s)	9, 157, 910, 1135, 1165
BspANI	GGCC	2 cut(s)	224, 643
BspCNI	CTCAG	3 cut(s)	674, 1163, 1169
BspDI	ATCGAT	1 cut(s)	411
BspFNI	CGCG	3 cut(s)	11, 140, 157
BspPI	GGATC	1 cut(s)	1149
BspQI	GCTCTTC	1 cut(s)	523
BsrBI	CCGCTC	1 cut(s)	910
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	332, 1079
BssECI	CCNNGG	2 cut(s)	225, 777
BssMI	GATC	2 cut(s)	114, 1141
BssT1I	CCWWGG	2 cut(s)	225, 777
Bst4CI	ACNGT	2 cut(s)	842, 1110
Bst6I	CTCTTC	3 cut(s)	265, 523, 1097
BstC8I	GCNNGC	2 cut(s)	543, 1130
BstDEI	CTNAG	3 cut(s)	661, 1150, 1156
BstENI	CCTNNNNNAGG	1 cut(s)	781
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	3 cut(s)	11, 140, 157
BstHHI	GCGC	3 cut(s)	142, 157, 741
BstKTI	GATC	2 cut(s)	117, 1144
BstMAI	GTCTC	1 cut(s)	1099
BstMBI	GATC	2 cut(s)	114, 1141
BstMWI	GCNNNNNNNGC	3 cut(s)	878, 916, 1129
BstUI	CGCG	3 cut(s)	11, 140, 157
BstV1I	GCAGC	6 cut(s)	116, 190, 289, 763, 938, 1144
BstV2I	GAAGAC	1 cut(s)	1104
BstX2I	RGATCY	1 cut(s)	1141
BstXI	CCANNNNNNTGG	1 cut(s)	769
BstYI	RGATCY	1 cut(s)	1141
Bsu15I	ATCGAT	1 cut(s)	411
Bsu36I	CCTNAGG	1 cut(s)	1156
BsuI	GTATCC	1 cut(s)	784
BsuRI	GGCC	2 cut(s)	224, 643
BsuTUI	ATCGAT	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	2 cut(s)	501, 796
BtsIMutI	CAGTG	3 cut(s)	501, 796, 838
Cac8I	GCNNGC	2 cut(s)	543, 1130
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	3 cut(s)	142, 157, 741
Cfr13I	GGNCC	1 cut(s)	733
ClaI	ATCGAT	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	913
CviAII	CATG	4 cut(s)	244, 404, 656, 1094
CviQI	GTAC	1 cut(s)	913
DdeI	CTNAG	3 cut(s)	661, 1150, 1156
DpnI	GATC	2 cut(s)	116, 1143
DpnII	GATC	2 cut(s)	114, 1141
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	1 cut(s)	641
Eam1104I	CTCTTC	3 cut(s)	265, 523, 1097
EarI	CTCTTC	3 cut(s)	265, 523, 1097
Ecl136II	GAGCTC	1 cut(s)	583
Eco130I	CCWWGG	2 cut(s)	225, 777
Eco147I	AGGCCT	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	585
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	1 cut(s)	733
Eco53kI	GAGCTC	1 cut(s)	583
Eco81I	CCTNAGG	1 cut(s)	1156
EcoICRI	GAGCTC	1 cut(s)	583
EcoNI	CCTNNNNNAGG	1 cut(s)	781
EcoRI	GAATTC	2 cut(s)	533, 709
EcoRV	GATATC	1 cut(s)	805
EcoT14I	CCWWGG	2 cut(s)	225, 777
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	2 cut(s)	225, 777
FaeI	CATG	4 cut(s)	247, 407, 659, 1097
FaiI	YATR	9 cut(s)	245, 307, 309, 405, 429, 452, 514, 657, 1095
FalI	AAGNNNNNCTT	6 cut(s)	190, 222, 209, 241, 357, 389
FaqI	GGGAC	1 cut(s)	1033
FatI	CATG	4 cut(s)	243, 403, 655, 1093
Fnu4HI	GCNGC	8 cut(s)	9, 105, 158, 204, 303, 752, 952, 1133
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	8 cut(s)	9, 105, 158, 204, 303, 752, 952, 1133
FspBI	CTAG	1 cut(s)	887
GlaI	GCGC	3 cut(s)	141, 156, 740
GluI	GCNGC	8 cut(s)	9, 105, 158, 204, 303, 752, 952, 1133
GsuI	CTGGAG	1 cut(s)	1062
HaeIII	GGCC	2 cut(s)	224, 643
HapII	CCGG	1 cut(s)	796
HhaI	GCGC	3 cut(s)	142, 157, 741
Hin1II	CATG	4 cut(s)	247, 407, 659, 1097
Hin6I	GCGC	3 cut(s)	140, 155, 739
HinP1I	GCGC	3 cut(s)	140, 155, 739
HincII	GTYRAC	2 cut(s)	88, 1026
HindII	GTYRAC	2 cut(s)	88, 1026
HinfI	GANTC	5 cut(s)	377, 860, 994, 1046, 1075
HpaII	CCGG	1 cut(s)	796
HphI	GGTGA	4 cut(s)	37, 267, 321, 1033
Hpy166II	GTNNAC	4 cut(s)	28, 88, 838, 1026
Hpy188I	TCNGA	2 cut(s)	322, 664
Hpy188III	TCNNGA	5 cut(s)	35, 554, 565, 706, 857
Hpy8I	GTNNAC	4 cut(s)	28, 88, 838, 1026
HpyAV	CCTTC	8 cut(s)	7, 32, 380, 498, 712, 863, 993, 1132
HpyCH4III	ACNGT	2 cut(s)	842, 1110
HpyCH4V	TGCA	9 cut(s)	104, 305, 360, 454, 506, 526, 881, 898, 1069
HpyF10VI	GCNNNNNNNGC	3 cut(s)	878, 916, 1129
HpyF3I	CTNAG	3 cut(s)	661, 1150, 1156
Hsp92II	CATG	4 cut(s)	247, 407, 659, 1097
HspAI	GCGC	3 cut(s)	140, 155, 739
Kzo9I	GATC	2 cut(s)	114, 1141
LguI	GCTCTTC	1 cut(s)	523
LmnI	GCTCC	1 cut(s)	924
Lsp1109I	GCAGC	6 cut(s)	116, 190, 289, 763, 938, 1144
LweI	GCATC	3 cut(s)	513, 859, 880
MaeI	CTAG	1 cut(s)	887
MaeIII	GTNAC	4 cut(s)	132, 273, 791, 842
MalI	GATC	2 cut(s)	116, 1143
MbiI	CCGCTC	1 cut(s)	910
MboI	GATC	2 cut(s)	114, 1141
MboII	GAAGA	5 cut(s)	252, 510, 680, 1104, 1114
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	1 cut(s)	1141
MhlI	GDGCHC	2 cut(s)	585, 1125
MlsI	TGGCCA	1 cut(s)	643
MluNI	TGGCCA	1 cut(s)	643
MlyI	GAGTC	3 cut(s)	988, 1055, 1069
MmeI	TCCRAC	1 cut(s)	946
MnlI	CCTC	9 cut(s)	214, 296, 451, 495, 572, 613, 658, 984, 1165
Mox20I	TGGCCA	1 cut(s)	643
MscI	TGGCCA	1 cut(s)	643
MseI	TTAA	4 cut(s)	240, 393, 467, 747
MslI	CAYNNNNRTG	1 cut(s)	511
Msp20I	TGGCCA	1 cut(s)	643
MspA1I	CMGCKG	1 cut(s)	1135
MspI	CCGG	1 cut(s)	796
MunI	CAATTG	1 cut(s)	693
MvnI	CGCG	3 cut(s)	11, 140, 157
MwoI	GCNNNNNNNGC	3 cut(s)	878, 916, 1129
NdeII	GATC	2 cut(s)	114, 1141
NlaIII	CATG	4 cut(s)	247, 407, 659, 1097
NmuCI	GTSAC	2 cut(s)	273, 791
PceI	AGGCCT	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	377, 860
PflMI	CCANNNNNTGG	1 cut(s)	656
PkrI	GCNGC	8 cut(s)	10, 106, 159, 205, 304, 753, 953, 1134
PleI	GAGTC	3 cut(s)	988, 1054, 1069
PpsI	GAGTC	3 cut(s)	988, 1054, 1069
Psp124BI	GAGCTC	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	733
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	1 cut(s)	1141
RsaI	GTAC	1 cut(s)	914
RsaNI	GTAC	1 cut(s)	913
RseI	CAYNNNNRTG	1 cut(s)	511
SacI	GAGCTC	1 cut(s)	585
SapI	GCTCTTC	1 cut(s)	523
SaqAI	TTAA	4 cut(s)	240, 393, 467, 747
SatI	GCNGC	8 cut(s)	9, 105, 158, 204, 303, 752, 952, 1133
Sau3AI	GATC	2 cut(s)	114, 1141
Sau96I	GGNCC	1 cut(s)	733
SchI	GAGTC	3 cut(s)	988, 1055, 1069
SduI	GDGCHC	2 cut(s)	585, 1125
SfaNI	GCATC	3 cut(s)	513, 859, 880
SinI	GGWCC	1 cut(s)	733
SmiMI	CAYNNNNRTG	1 cut(s)	511
SmlI	CTYRAG	3 cut(s)	552, 563, 847
SmoI	CTYRAG	3 cut(s)	552, 563, 847
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	5 cut(s)	9, 157, 910, 1135, 1165
SspMI	CTAG	1 cut(s)	887
SstI	GAGCTC	1 cut(s)	585
StuI	AGGCCT	1 cut(s)	224
StyI	CCWWGG	2 cut(s)	225, 777
TaaI	ACNGT	2 cut(s)	842, 1110
TaqI	TCGA	4 cut(s)	117, 411, 521, 537
TauI	GCSGC	2 cut(s)	11, 160
TfiI	GAWTC	2 cut(s)	377, 860
Tru1I	TTAA	4 cut(s)	240, 393, 467, 747
Tru9I	TTAA	4 cut(s)	240, 393, 467, 747
TscAI	CASTG	3 cut(s)	508, 796, 845
TseFI	GTSAC	2 cut(s)	273, 791
TseI	GCWGC	6 cut(s)	104, 203, 302, 751, 951, 1132
Tsp45I	GTSAC	2 cut(s)	273, 791
TspDTI	ATGAA	5 cut(s)	62, 71, 260, 546, 644
TspGWI	ACGGA	2 cut(s)	120, 1087
TspRI	CASTG	3 cut(s)	508, 796, 845
Van91I	CCANNNNNTGG	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	733
XagI	CCTNNNNNAGG	1 cut(s)	781
XapI	RAATTY	2 cut(s)	533, 709
XspI	CTAG	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.