Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002481

Physical Location & Seq

Genomic Coordinates Forward (+)

28021270 .. 28021651

Gene Structure 382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0200700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGACACTCGCAAGACTTTTACAGATCACCTCTATACAGCCCTTGTCAACGCTGGACTCCGTACTTCGGGAGATGACCCTGAACTTGAGAAGGGAGAAAAGTGTGCATCTTCCAGGTGGTGCCTTCATGAGCTTGTGACAATCCTTGAACGCAAGAGGACCTCCTCCGGTCAACATGTTCTACCAGTCTTCTACGACATCGATCCATCTCATGTGAGAAAGCAGGCAGAAAATCTTGCAAAGATTCCTACATACCAAGACAATCAGTCTTTGGAGAAGTTAAATGACTGGCGGGCAGCTAATAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007623 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009889 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048511 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0060560 GO:0065007 GO:0071695 GO:0071840 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

103

Amino Acids

11.8

Weight (kDa)

6.9

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	35 - 100	6.8e-13	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00150
fragaria_vesca	FvH4_5g00020 FvH4_5g00020 FvH4_7g11120
malus_domestica	MD00G1043300.v1.1 MD02G1210200.v1.1 MD04G1088100.v1.1 MD07G1115800.v1.1
prunus_persica	Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.2G138400_v2.0.a1 Prupe.5G072300_v2.0.a1 Prupe.5G072300_v2.0.a1
pyrus_communis	pycom02g17200 pycom06g05130 pycom07g10860
rosa_chinensis	RchiOBHm_Chr1g0349141 RchiOBHm_Chr7g0202931
rosa_laevigata	RLG00000003564 RLG00000028602
rosa_multiflora	Rmu_co8366677.1_g000001 Rmu_co8449587.1_g000001 Rmu_sc0008159.1_g000016 Rmu_ssc0000150.1_g000020
rosa_roxburghii	Rroxscaffold_3G00254180 Rroxscaffold_4G00306070
rosa_rugosa	Rorug01G0200700 Rorug07G0074000
rosa_samantha	Rh1AG218400 Rh1BG183800 Rh1CG202900 Rh1DG213600 Rh7AG201800 Rh7BG202000 Rh7CG213100 Rh7DG208800
rosa_wichuraiana	Rw1G018550 Rw7G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	120
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	149
AhdI	GACNNNNNGTC	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	2 cut(s)	133, 299
AluI	AGCT	2 cut(s)	133, 299
AlwI	GGATC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	115
BfaI	CTAG	1 cut(s)	310
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	185, 293
BseBI	CCWGG	1 cut(s)	115
BseCI	ATCGAT	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseNI	ACTGG	2 cut(s)	185, 293
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	308
BshNI	GGYRCC	1 cut(s)	120
BshVI	ATCGAT	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	25, 202
BspACI	CCGC	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	185, 293
BssMI	GATC	2 cut(s)	25, 202
Bst2UI	CCWGG	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	225, 294
BstKTI	GATC	2 cut(s)	28, 205
BstMBI	GATC	2 cut(s)	25, 202
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	308
BstV2I	GAAGAC	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	225, 294
CciI	TCATGA	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	3 cut(s)	128, 176, 212
CviJI	RGCY	3 cut(s)	41, 133, 299
CviKI_1	RGCY	3 cut(s)	41, 133, 299
CviQI	GTAC	1 cut(s)	63
DpnI	GATC	2 cut(s)	27, 204
DpnII	GATC	2 cut(s)	25, 202
DriI	GACNNNNNGTC	1 cut(s)	265
Eam1105I	GACNNNNNGTC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	113
FaeI	CATG	3 cut(s)	131, 179, 215
FaiI	YATR	5 cut(s)	36, 129, 177, 213, 253
FatI	CATG	3 cut(s)	127, 175, 211
FauI	CCCGC	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	310
GluI	GCNGC	1 cut(s)	297
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	3 cut(s)	131, 179, 215
HincII	GTYRAC	2 cut(s)	49, 173
HindII	GTYRAC	2 cut(s)	49, 173
HinfI	GANTC	2 cut(s)	57, 244
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	49, 173
Hpy188III	TCNNGA	2 cut(s)	69, 128
Hpy8I	GTNNAC	2 cut(s)	49, 173
HpyAV	CCTTC	2 cut(s)	85, 134
HpyCH4V	TGCA	2 cut(s)	107, 239
Hsp92II	CATG	3 cut(s)	131, 179, 215
Kzo9I	GATC	2 cut(s)	25, 202
LpnPI	CCDG	8 cut(s)	39, 93, 100, 127, 181, 198, 209, 274
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	27, 204
MboI	GATC	2 cut(s)	25, 202
MboII	GAAGA	2 cut(s)	102, 181
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	4 cut(s)	41, 150, 172, 175
MseI	TTAA	1 cut(s)	281
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
NdeII	GATC	2 cut(s)	25, 202
NlaIII	CATG	3 cut(s)	131, 179, 215
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	179
PagI	TCATGA	1 cut(s)	127
PciI	ACATGT	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	298
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PpuMI	RGGWCCY	1 cut(s)	159
PscI	ACATGT	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	2 cut(s)	25, 202
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	115
SetI	ASST	5 cut(s)	33, 119, 135, 164, 301
SfaNI	GCATC	1 cut(s)	116
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	113
TaqI	TCGA	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.