Rmu_sc0000026.1_g000001

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000026.1
OG0008894
Physical Location & Seq
Forward (+)
442 .. 3842
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 633 bp
atgctaactgggcatcaatccccttcatgcattagaaaatggcaagagttgcacatgccaaccaaattctcaaagaaggatgtttcagcttctacacctggatctcgaaatgacagacgcctgtaccgattaatcaagctcgagaatggcctcactgcattgctagttcatgatcctgagattggagaatcccaactctccgagggctctgagaaagacgacgatagtgaaggagaggatgaagatgaactgaataagaaaaagggaggggattcttggactaacaaggtggaggaccagaggttgatgttggagaacacaattaagcattgtgggtttgtcaacaatggtgttcatagtttccaaaaccggaaacccacccctctttctctctcctctcccccgatccttctccctttcccttcgggttcttctcttccccttcgattcttcactttccggccaccaaccggcgtgcaaccggtcaccacaggagcgcctcaacccgctcttgacacttgtgacctaggattttggagttttggccgtgaaagtccggatcgaagcaagaattgctctggttgcagttttgagatttcgcagatttccggccacctccggccaccagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

210

Amino Acids

23.31

Weight (kDa)

6.08

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 509
AccIII TCCGGA 1 cut(s) 556
AciI CCGC 1 cut(s) 507
AclWI GGATC 4 cut(s) 109, 167, 400, 567
AcoI YGGCCR 4 cut(s) 461, 544, 610, 620
AcsI RAATTY 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 182, 470
AgeI ACCGGT 1 cut(s) 481
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 2 cut(s) 89, 139
AluI AGCT 2 cut(s) 89, 139
AlwI GGATC 4 cut(s) 109, 167, 400, 567
Ama87I CYCGRG 1 cut(s) 140
Aor13HI TCCGGA 1 cut(s) 556
AoxI GGCC 5 cut(s) 148, 461, 544, 610, 620
ApoI RAATTY 1 cut(s) 65
AseI ATTAAT 1 cut(s) 131
AsiGI ACCGGT 1 cut(s) 481
AspA2I CCTAGG 1 cut(s) 526
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 478
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 1 cut(s) 295
AvrII CCTAGG 1 cut(s) 526
BaeI ACNNNNGTAYC 2 cut(s) 107, 140
BanII GRGCYC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 531
BciT130I CCWGG 1 cut(s) 99
BfaI CTAG 2 cut(s) 164, 527
BfoI RGCGCY 1 cut(s) 500
BlnI CCTAGG 1 cut(s) 526
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 295
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 22
BmuI ACTGGG 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 201, 526
BsaWI WCCGGW 3 cut(s) 369, 481, 556
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 470
Bse118I RCCGGY 2 cut(s) 470, 481
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 158
BseAI TCCGGA 1 cut(s) 556
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 201, 526
BseGI GGATG 2 cut(s) 85, 244
BseLI CCNNNNNNNGG 2 cut(s) 182, 470
BseMI GCAATG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 168, 201
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 385
BshFI GGCC 5 cut(s) 150, 463, 546, 612, 622
BshTI ACCGGT 1 cut(s) 481
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 7 cut(s) 370, 460, 471, 482, 557, 609, 619
BslI CCNNNNNNNGG 2 cut(s) 182, 470
BsnI GGCC 5 cut(s) 150, 463, 546, 612, 622
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 556
Bsp143I GATC 4 cut(s) 101, 172, 405, 559
BspACI CCGC 1 cut(s) 507
BspANI GGCC 5 cut(s) 150, 463, 546, 612, 622
BspCNI CTCAG 2 cut(s) 169, 202
BspEI TCCGGA 1 cut(s) 556
BspHI TCATGA 1 cut(s) 169
BspPI GGATC 4 cut(s) 109, 167, 400, 567
BsrBI CCGCTC 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 158
BsrFI RCCGGY 2 cut(s) 470, 481
BsrI ACTGG 1 cut(s) 13
BssAI RCCGGY 2 cut(s) 470, 481
BssECI CCNNGG 2 cut(s) 201, 526
BssMI GATC 4 cut(s) 101, 172, 405, 559
BssNI GRCGYC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 441
BstACI GRCGYC 1 cut(s) 118
BstAPI GCANNNNNTGC 2 cut(s) 49, 573
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 2 cut(s) 177, 210
BstEII GGTNACC 1 cut(s) 484
BstF5I GGATG 2 cut(s) 85, 244
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 4 cut(s) 104, 175, 408, 562
BstMBI GATC 4 cut(s) 101, 172, 405, 559
BstMWI GCNNNNNNNGC 4 cut(s) 10, 49, 573, 582
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 58
BstPI GGTNACC 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BsuRI GGCC 5 cut(s) 150, 463, 546, 612, 622
BtsCI GGATG 2 cut(s) 85, 244
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 476
CciI TCATGA 1 cut(s) 169
CfoI GCGC 1 cut(s) 499
Cfr10I RCCGGY 2 cut(s) 470, 481
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 124
CspAI ACCGGT 1 cut(s) 481
CviAII CATG 3 cut(s) 27, 55, 170
CviJI RGCY 8 cut(s) 89, 139, 150, 207, 463, 546, 612, 622
CviKI_1 RGCY 8 cut(s) 89, 139, 150, 207, 463, 546, 612, 622
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 177, 210
DpnI GATC 4 cut(s) 103, 174, 407, 561
DpnII GATC 4 cut(s) 101, 172, 405, 559
EaeI YGGCCR 4 cut(s) 461, 544, 610, 620
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 526
Eco24I GRGCYC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 295
Eco88I CYCGRG 1 cut(s) 140
Eco91I GGTNACC 1 cut(s) 484
EcoO65I GGTNACC 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 526
EcoT22I ATGCAT 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 526
FaeI CATG 3 cut(s) 30, 58, 173
FaiI YATR 4 cut(s) 28, 56, 171, 357
FatI CATG 3 cut(s) 26, 54, 169
FauI CCCGC 1 cut(s) 514
FokI GGATG 2 cut(s) 92, 251
FriOI GRGCYC 1 cut(s) 209
FspBI CTAG 2 cut(s) 164, 527
GlaI GCGC 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 500
HaeIII GGCC 5 cut(s) 150, 463, 546, 612, 622
HapII CCGG 7 cut(s) 370, 460, 471, 482, 557, 609, 619
HgaI GACGC 1 cut(s) 126
HhaI GCGC 1 cut(s) 499
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 3 cut(s) 30, 58, 173
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 3 cut(s) 188, 272, 447
HpaII CCGG 7 cut(s) 370, 460, 471, 482, 557, 609, 619
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 2 cut(s) 202, 211
Hpy188III TCNNGA 6 cut(s) 105, 142, 170, 176, 512, 557
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 6 cut(s) 33, 70, 224, 419, 432, 452
HpyCH4V TGCA 5 cut(s) 30, 52, 158, 478, 585
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 49, 573, 582
HpyF3I CTNAG 2 cut(s) 177, 210
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 3 cut(s) 30, 58, 173
HspAI GCGC 1 cut(s) 497
Kpn2I TCCGGA 1 cut(s) 556
Kzo9I GATC 4 cut(s) 101, 172, 405, 559
LmnI GCTCC 1 cut(s) 494
LweI GCATC 1 cut(s) 22
MaeI CTAG 2 cut(s) 164, 527
MaeIII GTNAC 2 cut(s) 484, 521
MalI GATC 4 cut(s) 103, 174, 407, 561
MbiI CCGCTC 1 cut(s) 509
MboI GATC 4 cut(s) 101, 172, 405, 559
MboII GAAGA 4 cut(s) 254, 423, 428, 442
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 3 cut(s) 65, 321, 571
MmeI TCCRAC 1 cut(s) 291
Mph1103I ATGCAT 1 cut(s) 32
MroI TCCGGA 1 cut(s) 556
MseI TTAA 3 cut(s) 131, 324, 631
MspI CCGG 7 cut(s) 370, 460, 471, 482, 557, 609, 619
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 4 cut(s) 10, 49, 573, 582
NdeII GATC 4 cut(s) 101, 172, 405, 559
NlaIII CATG 3 cut(s) 30, 58, 173
NmuCI GTSAC 2 cut(s) 484, 521
NsiI ATGCAT 1 cut(s) 32
NspI RCATGY 1 cut(s) 58
PaeR7I CTCGAG 1 cut(s) 140
PagI TCATGA 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 3 cut(s) 188, 272, 447
PinAI ACCGGT 1 cut(s) 481
PshBI ATTAAT 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 484
PspGI CCWGG 1 cut(s) 97
PspPI GGNCC 1 cut(s) 295
PsuI RGATCY 1 cut(s) 101
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 3 cut(s) 131, 324, 631
Sau3AI GATC 4 cut(s) 101, 172, 405, 559
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 209
SetI ASST 7 cut(s) 91, 100, 141, 291, 305, 528, 618
SfaNI GCATC 1 cut(s) 22
Sfr274I CTCGAG 1 cut(s) 140
SinI GGWCC 1 cut(s) 295
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 3 cut(s) 65, 321, 571
SsiI CCGC 1 cut(s) 507
SspMI CTAG 2 cut(s) 164, 527
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 526
TaqI TCGA 4 cut(s) 106, 141, 445, 562
TasI AATT 3 cut(s) 65, 321, 571
TfiI GAWTC 3 cut(s) 188, 272, 447
Tru1I TTAA 3 cut(s) 131, 324, 631
Tru9I TTAA 3 cut(s) 131, 324, 631
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 2 cut(s) 484, 521
Tsp45I GTSAC 2 cut(s) 484, 521
TspDTI ATGAA 5 cut(s) 15, 158, 255, 261, 344
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 295
VspI ATTAAT 1 cut(s) 131
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 58
XhoI CTCGAG 1 cut(s) 140
XmaJI CCTAGG 1 cut(s) 526
XspI CTAG 2 cut(s) 164, 527
Zsp2I ATGCAT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.