Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000206.1

Orthogroup ID

OG0006929

Physical Location & Seq

Genomic Coordinates Forward (+)

25784 .. 28975

Gene Structure 3192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgaattctgattggggtgtcaagtgggaggatatgaccaccaaagaagatgatgagatgcaagaagaagagaagaatgaggaagaagttgtgtatgtgcttccatggggggaaaaggctaaaaggcaaaaaaataacccaaatggtgtccaacccatgaaggggagggctaaagggccaaatttgagaggcaaaaggacgctcttcacgccttccagctcaactttgctagagaaggctttccgcgctcgggagattactcttctcaacccaatttggatacattcgagggtttccgacaaaccgttttacgcgattttgcataggattgatgttgggattgtcattgatttggagcctcctagaacagagggcccgactctgtctatagccggggcggtgcagtctcagaagctggtcgtgagggcgatttcgcagctgcagtcactgcccagtggggatattaagcttttgtgtgacatggtggtggagagtgtgaatgagcttactgggtatgatagagttatggagtacaagtttcatgaagatgagcatggggaggttttggctgaagtgggtgagctcgggcttcttctcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

200

Amino Acids

22.63

Weight (kDa)

5.15

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAS_2	PF08446	66 - 120	8.8e-16	PAS fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006929)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19750
malus_domestica	MD17G1116700.v1.1
pyrus_communis	pycom04g16280 pycom10g22360
rosa_chinensis	RchiOBHm_Chr2g0161111
rosa_laevigata	RLG00000013469 RLG00000028069
rosa_multiflora	Rmu_co8348701.1_g000001 Rmu_sc0000206.1_g000004 Rmu_sc0000780.1_g000014 Rmu_sc0004343.1_g000020 Rmu_sc0005828.1_g000007 Rmu_sc0007671.1_g000015 Rmu_sc0011620.1_g000002 Rmu_sc0012237.1_g000002 Rmu_sc0012589.1_g000001
rosa_rugosa	Rorug04G0078700
rosa_samantha	Rh1CG080300 Rh2AG233400 Rh2AG289500 Rh2DG314400 Rh6BG122600 Rh6CG121000 Rh6DG108700 Rh6DG223800 Rh7BG343600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	246, 314
AciI	CCGC	2 cut(s)	244, 398
AcsI	RAATTY	2 cut(s)	4, 181
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	3 cut(s)	161, 162, 250
AluBI	AGCT	6 cut(s)	219, 415, 439, 469, 505, 583
AluI	AGCT	6 cut(s)	219, 415, 439, 469, 505, 583
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	1 cut(s)	411
AlwNI	CAGNNNCTG	2 cut(s)	415, 448
Ama87I	CYCGRG	2 cut(s)	249, 584
AoxI	GGCC	2 cut(s)	176, 373
ApaI	GGGCCC	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	436, 439
ApoI	RAATTY	2 cut(s)	4, 181
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	3 cut(s)	176, 373, 374
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	590
AvaI	CYCGRG	2 cut(s)	249, 584
BaeGI	GKGCMC	1 cut(s)	377
BanII	GRGCYC	2 cut(s)	377, 585
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	426, 448
BciVI	GTATCC	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	2 cut(s)	230, 363
BfmI	CTRYAG	2 cut(s)	387, 440
BfuI	GTATCC	1 cut(s)	273
BisI	GCNGC	2 cut(s)	437, 440
BlsI	GCNGC	2 cut(s)	438, 441
Bme1390I	CCNGG	1 cut(s)	394
BmeT110I	CYCGRG	2 cut(s)	249, 584
BmgT120I	GGNCC	3 cut(s)	176, 373, 374
BmiI	GGNNCC	2 cut(s)	357, 375
BmrFI	CCNGG	1 cut(s)	394
BmrI	ACTGGG	2 cut(s)	447, 519
BmsI	GCATC	1 cut(s)	48
BmuI	ACTGGG	2 cut(s)	447, 519
BpuMI	CCSGG	1 cut(s)	394
BsaJI	CCNNGG	2 cut(s)	104, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 162, 250
Bse1I	ACTGG	2 cut(s)	453, 514
BseDI	CCNNGG	2 cut(s)	104, 393
BseLI	CCNNNNNNNGG	3 cut(s)	161, 162, 250
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	2 cut(s)	453, 514
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	426, 448
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	2 cut(s)	246, 314
BshFI	GGCC	2 cut(s)	178, 375
BsiHKAI	GWGCWC	1 cut(s)	585
BsiHKCI	CYCGRG	2 cut(s)	249, 584
BsiSI	CCGG	1 cut(s)	393
BslI	CCNNNNNNNGG	3 cut(s)	161, 162, 250
BsmAI	GTCTC	1 cut(s)	411
BsnI	GGCC	2 cut(s)	178, 375
BsoBI	CYCGRG	2 cut(s)	249, 584
Bsp120I	GGGCCC	1 cut(s)	373
Bsp1286I	GDGCHC	2 cut(s)	377, 585
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	2 cut(s)	244, 398
BspANI	GGCC	2 cut(s)	178, 375
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	2 cut(s)	246, 314
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	357, 375
BspMAI	CTGCAG	1 cut(s)	444
BspQI	GCTCTTC	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	453, 514
BssECI	CCNNGG	2 cut(s)	104, 393
BssT1I	CCWWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	306
Bst6I	CTCTTC	3 cut(s)	63, 209, 267
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	104
BstFNI	CGCG	2 cut(s)	246, 314
BstHHI	GCGC	1 cut(s)	248
BstMAI	GTCTC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 245, 448
BstSCI	CCNGG	1 cut(s)	392
BstSFI	CTRYAG	2 cut(s)	387, 440
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	2 cut(s)	246, 314
BstV1I	GCAGC	2 cut(s)	426, 448
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	178, 375
BtgI	CCRYGG	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	2 cut(s)	446, 460
CaiI	CAGNNNCTG	2 cut(s)	415, 448
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	3 cut(s)	176, 373, 374
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	6 cut(s)	105, 157, 481, 542, 554, 600
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	1 cut(s)	408
Eam1104I	CTCTTC	3 cut(s)	63, 209, 267
EarI	CTCTTC	3 cut(s)	63, 209, 267
Ecl136II	GAGCTC	1 cut(s)	583
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	2 cut(s)	377, 585
Eco53kI	GAGCTC	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	591
Eco88I	CYCGRG	2 cut(s)	249, 584
EcoICRI	GAGCTC	1 cut(s)	583
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	2 cut(s)	377, 585
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	6 cut(s)	108, 160, 484, 545, 557, 603
FatI	CATG	6 cut(s)	104, 156, 480, 541, 553, 599
Fnu4HI	GCNGC	2 cut(s)	437, 440
FriOI	GRGCYC	2 cut(s)	377, 585
Fsp4HI	GCNGC	2 cut(s)	437, 440
FspBI	CTAG	2 cut(s)	230, 363
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	2 cut(s)	437, 440
HaeIII	GGCC	2 cut(s)	178, 375
HapII	CCGG	1 cut(s)	393
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	6 cut(s)	108, 160, 484, 545, 557, 603
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	1 cut(s)	590
Hpy188I	TCNGA	3 cut(s)	10, 298, 411
Hpy188III	TCNNGA	3 cut(s)	251, 421, 542
HpyAV	CCTTC	3 cut(s)	154, 222, 229
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4V	TGCA	4 cut(s)	61, 322, 403, 442
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 245, 448
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	108, 160, 484, 545, 557, 603
HspAI	GCGC	1 cut(s)	246
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	5 cut(s)	229, 401, 406, 466, 495
Lsp1109I	GCAGC	2 cut(s)	426, 448
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	2 cut(s)	230, 363
MaeIII	GTNAC	2 cut(s)	444, 476
MboII	GAAGA	9 cut(s)	59, 77, 80, 85, 95, 196, 254, 557, 584
MhlI	GDGCHC	2 cut(s)	377, 585
MluCI	AATT	3 cut(s)	4, 181, 273
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	2 cut(s)	175, 321
MnlI	CCTC	9 cut(s)	22, 73, 159, 182, 282, 364, 369, 417, 553
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	2 cut(s)	485, 546
MspA1I	CMGCKG	1 cut(s)	439
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	394
MvnI	CGCG	2 cut(s)	246, 314
MwoI	GCNNNNNNNGC	3 cut(s)	208, 245, 448
NciI	CCSGG	1 cut(s)	394
NcoI	CCATGG	1 cut(s)	104
NlaIII	CATG	6 cut(s)	108, 160, 484, 545, 557, 603
NlaIV	GGNNCC	2 cut(s)	357, 375
NmuCI	GTSAC	2 cut(s)	444, 476
PagI	TCATGA	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	209
PdmI	GAANNNNTTC	1 cut(s)	239
PflFI	GACNNNGTC	1 cut(s)	382
PkrI	GCNGC	2 cut(s)	438, 441
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	585
PspN4I	GGNNCC	2 cut(s)	357, 375
PspOMI	GGGCCC	1 cut(s)	373
PspPI	GGNCC	3 cut(s)	176, 373, 374
PstI	CTGCAG	1 cut(s)	444
PstNI	CAGNNNCTG	2 cut(s)	415, 448
PsyI	GACNNNGTC	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	2 cut(s)	485, 546
SacI	GAGCTC	1 cut(s)	585
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	2 cut(s)	437, 440
Sau96I	GGNCC	3 cut(s)	176, 373, 374
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	2 cut(s)	377, 585
SetI	ASST	7 cut(s)	221, 417, 441, 471, 507, 564, 585
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	2 cut(s)	387, 440
SmiMI	CAYNNNNRTG	2 cut(s)	485, 546
Sse9I	AATT	3 cut(s)	4, 181, 273
SsiI	CCGC	2 cut(s)	244, 398
SspMI	CTAG	2 cut(s)	230, 363
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	392
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	287
TasI	AATT	3 cut(s)	4, 181, 273
TatI	WGTACW	1 cut(s)	531
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	2 cut(s)	453, 460
TseFI	GTSAC	2 cut(s)	444, 476
TseI	GCWGC	2 cut(s)	436, 439
Tsp45I	GTSAC	2 cut(s)	444, 476
TspDTI	ATGAA	4 cut(s)	17, 173, 530, 558
TspRI	CASTG	2 cut(s)	453, 460
Tth111I	GACNNNGTC	1 cut(s)	382
XapI	RAATTY	2 cut(s)	4, 181
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	2 cut(s)	230, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.