Rmu_sc0000208.1_g000029

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000208.1
OG0003912
Physical Location & Seq
Reverse (-)
85742 .. 88876
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 621 bp
atggccaggcaaaggatttgggcttctggttctatagcttgggtttgggcttgggcctttgggcctgggcttaattcgaccgaaataaaactactcccaagtcttcatcatcagctttctcatctccctcctcacctaactgtcctactccgtctaaacatgtcaaccatgacaactgtgaacgttccctctcagtgcatgctcagaaatgcacctaagactcgattcaccagttctatcatcaagttctcatctccacttggatctgtgaagactctctccaagtcttttggcttgaaagcatctgcctctgcccgaacatcgatggcagtatacaaggttaagctgattgggccagacggtgaggagaacgagtttgacgctccagatgactcttacatcttggattcagctgagaacgcaggagttgagctgccctattcttgcagggctggggcatgctccacctgtgcaggaaagatggtagcaggtgcagtggaccagtcagatggttccttccttgatgacaaccaaatgaaggagggttatgtgctgacctgtgtctcgtatccaacttcagactgtgtgatccatactcacaaggaaagtgaactgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

206

Amino Acids

22.37

Weight (kDa)

6.58

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 119 - 192 8.7e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 479
AccI GTMKAC 1 cut(s) 333
AclI AACGTT 1 cut(s) 183
AclWI GGATC 2 cut(s) 271, 583
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 561
AfiI CCNNNNNNNGG 2 cut(s) 12, 538
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 2 cut(s) 5, 64
AluBI AGCT 5 cut(s) 38, 115, 346, 413, 433
AluI AGCT 5 cut(s) 38, 115, 346, 413, 433
Alw26I GTCTC 1 cut(s) 568
AlwI GGATC 2 cut(s) 271, 583
AoxI GGCC 4 cut(s) 3, 54, 62, 353
ApeKI GCWGC 1 cut(s) 433
AspS9I GGNCC 4 cut(s) 54, 62, 353, 499
AsuHPI GGTGA 3 cut(s) 125, 220, 374
AvaII GGWCC 1 cut(s) 499
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 95, 278
BbvI GCAGC 1 cut(s) 420
BccI CCATC 3 cut(s) 319, 475, 503
BciT130I CCWGG 2 cut(s) 7, 66
BciVI GTATCC 1 cut(s) 579
BcoDI GTCTC 1 cut(s) 568
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 479
BfuI GTATCC 1 cut(s) 579
BisI GCNGC 1 cut(s) 434
BlsI GCNGC 1 cut(s) 435
Bme1390I CCNGG 2 cut(s) 7, 66
Bme18I GGWCC 1 cut(s) 499
BmgT120I GGNCC 4 cut(s) 54, 62, 353, 499
BmiI GGNNCC 1 cut(s) 514
BmrFI CCNGG 2 cut(s) 7, 66
BmsI GCATC 1 cut(s) 311
BoxI GACNNNNGTC 1 cut(s) 560
BpiI GAAGAC 2 cut(s) 95, 278
BpmI CTGGAG 1 cut(s) 369
Bsa29I ATCGAT 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 538
Bse1I ACTGG 2 cut(s) 231, 502
BseBI CCWGG 2 cut(s) 7, 66
BseCI ATCGAT 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 12, 538
BseMII CTCAG 3 cut(s) 206, 217, 405
BseNI ACTGG 2 cut(s) 231, 502
BseRI GAGGAG 2 cut(s) 120, 380
BseXI GCAGC 1 cut(s) 420
BseYI CCCAGC 1 cut(s) 452
BsgI GTGCAG 2 cut(s) 492, 513
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 4 cut(s) 5, 56, 64, 355
BshVI ATCGAT 1 cut(s) 323
BsiEI CGRYCG 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 12, 538
BsmAI GTCTC 1 cut(s) 568
BsnI GGCC 4 cut(s) 5, 56, 64, 355
Bsp143I GATC 2 cut(s) 263, 588
BspANI GGCC 4 cut(s) 5, 56, 64, 355
BspCNI CTCAG 3 cut(s) 205, 216, 406
BspDI ATCGAT 1 cut(s) 323
BspLI GGNNCC 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 479
BspPI GGATC 2 cut(s) 271, 583
BsrI ACTGG 2 cut(s) 231, 502
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 2 cut(s) 263, 588
BssNAI GTATAC 1 cut(s) 334
Bst1107I GTATAC 1 cut(s) 334
Bst2UI CCWGG 2 cut(s) 7, 66
Bst4CI ACNGT 5 cut(s) 142, 178, 362, 584, 615
BstC8I GCNNGC 2 cut(s) 200, 460
BstDEI CTNAG 4 cut(s) 192, 203, 216, 414
BstKTI GATC 2 cut(s) 266, 591
BstMAI GTCTC 1 cut(s) 568
BstMBI GATC 2 cut(s) 263, 588
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 352, 419
BstNI CCWGG 2 cut(s) 7, 66
BstNSI RCATGY 3 cut(s) 163, 202, 462
BstPAI GACNNNNGTC 1 cut(s) 560
BstSCI CCNGG 2 cut(s) 5, 64
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 420
BstV2I GAAGAC 2 cut(s) 95, 278
BstX2I RGATCY 1 cut(s) 263
BstXI CCANNNNNNTGG 1 cut(s) 509
BstYI RGATCY 1 cut(s) 263
BstZ17I GTATAC 1 cut(s) 334
Bsu15I ATCGAT 1 cut(s) 323
BsuI GTATCC 1 cut(s) 579
BsuRI GGCC 4 cut(s) 5, 56, 64, 355
BsuTUI ATCGAT 1 cut(s) 323
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 2 cut(s) 200, 501
BveI ACCTGC 1 cut(s) 479
Cac8I GCNNGC 2 cut(s) 200, 460
Cfr13I GGNCC 4 cut(s) 54, 62, 353, 499
ClaI ATCGAT 1 cut(s) 323
CseI GACGC 1 cut(s) 389
CviAII CATG 4 cut(s) 160, 169, 199, 459
DdeI CTNAG 4 cut(s) 192, 203, 216, 414
DpnI GATC 2 cut(s) 265, 590
DpnII GATC 2 cut(s) 263, 588
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 499
Eco57I CTGAAG 1 cut(s) 561
EcoRII CCWGG 2 cut(s) 5, 64
FaeI CATG 4 cut(s) 163, 172, 202, 462
FaiI YATR 8 cut(s) 35, 161, 170, 200, 334, 460, 549, 594
FatI CATG 4 cut(s) 159, 168, 198, 458
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 434
Fsp4HI GCNGC 1 cut(s) 434
GluI GCNGC 1 cut(s) 434
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 4 cut(s) 5, 56, 64, 355
HgaI GACGC 1 cut(s) 389
Hin1II CATG 4 cut(s) 163, 172, 202, 462
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 5 cut(s) 220, 225, 274, 392, 407
HphI GGTGA 3 cut(s) 125, 220, 374
Hpy166II GTNNAC 5 cut(s) 165, 181, 334, 499, 611
Hpy188I TCNGA 3 cut(s) 206, 508, 580
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 5 cut(s) 165, 181, 334, 499, 611
HpyAV CCTTC 2 cut(s) 526, 532
HpyCH4III ACNGT 5 cut(s) 142, 178, 362, 584, 615
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 5 cut(s) 198, 212, 447, 473, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 419
HpyF3I CTNAG 4 cut(s) 192, 203, 216, 414
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 4 cut(s) 163, 172, 202, 462
Kzo9I GATC 2 cut(s) 263, 588
LmnI GCTCC 2 cut(s) 388, 467
Lsp1109I GCAGC 1 cut(s) 420
LweI GCATC 1 cut(s) 311
MaeII ACGT 1 cut(s) 183
MalI GATC 2 cut(s) 265, 590
MboI GATC 2 cut(s) 263, 588
MboII GAAGA 2 cut(s) 95, 283
MflI RGATCY 1 cut(s) 263
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 73
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 214, 268, 386
MmeI TCCRAC 1 cut(s) 596
MnlI CCTC 6 cut(s) 138, 141, 199, 319, 358, 535
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 72, 342
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 413
MspR9I CCNGG 2 cut(s) 7, 66
MvaI CCWGG 2 cut(s) 7, 66
MwoI GCNNNNNNNGC 2 cut(s) 352, 419
NdeII GATC 2 cut(s) 263, 588
NlaIII CATG 4 cut(s) 163, 172, 202, 462
NlaIV GGNNCC 1 cut(s) 514
NspI RCATGY 3 cut(s) 163, 202, 462
PaeI GCATGC 2 cut(s) 202, 462
PaqCI CACCTGC 1 cut(s) 479
PciI ACATGT 1 cut(s) 159
PfeI GAWTC 2 cut(s) 225, 407
PkrI GCNGC 1 cut(s) 435
PleI GAGTC 3 cut(s) 214, 268, 386
PpsI GAGTC 3 cut(s) 214, 268, 386
PscI ACATGT 1 cut(s) 159
PshAI GACNNNNGTC 1 cut(s) 560
Psp1406I AACGTT 1 cut(s) 183
Psp6I CCWGG 2 cut(s) 5, 64
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 2 cut(s) 5, 64
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 4 cut(s) 54, 62, 353, 499
PsuI RGATCY 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 413
SaqAI TTAA 2 cut(s) 72, 342
SatI GCNGC 1 cut(s) 434
Sau3AI GATC 2 cut(s) 263, 588
Sau96I GGNCC 4 cut(s) 54, 62, 353, 499
SchI GAGTC 3 cut(s) 214, 268, 386
ScrFI CCNGG 2 cut(s) 7, 66
SfaNI GCATC 1 cut(s) 311
SfcI CTRYAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 499
SphI GCATGC 2 cut(s) 202, 462
Sse9I AATT 1 cut(s) 73
StyD4I CCNGG 2 cut(s) 5, 64
TaaI ACNGT 5 cut(s) 142, 178, 362, 584, 615
TaiI ACGT 1 cut(s) 186
TaqI TCGA 3 cut(s) 77, 223, 323
TaqII GACCGA 1 cut(s) 95
TasI AATT 1 cut(s) 73
TfiI GAWTC 2 cut(s) 225, 407
Tru1I TTAA 2 cut(s) 72, 342
Tru9I TTAA 2 cut(s) 72, 342
TscAI CASTG 2 cut(s) 200, 501
TseI GCWGC 1 cut(s) 433
TspDTI ATGAA 2 cut(s) 95, 551
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 2 cut(s) 200, 501
VpaK11BI GGWCC 1 cut(s) 499
XceI RCATGY 3 cut(s) 163, 202, 462
XmiI GTMKAC 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.