Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000543.1

Orthogroup ID

OG0003947

Physical Location & Seq

Genomic Coordinates Forward (+)

257009 .. 258291

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgtcggctgccgtggaagctatgtctgcaaccaaagatgttggtttcagttctcaagtgcaggaagtggtcttgccttcttcatctttagtttccttcaaccctcatatattttctctcttggtgaatatgtcggctgccgtggaagctatgtctgcaaccaaagatgttggtttcagttctcaagtgcaggaagtggagtttaagaatgataagaacagcaacaaggatgcaggtggcgaaccaagcctgcatcaccatgacgaaaatgatgagcttaaagatgaggttgatccagatgaagaggatgagcttgccacattcaaatgtgacaaagaattggttcttggccccaagttttctctcaaggagcagcttgagaaggataaagatgacgagagtttgaggaaatggaagcagcaacttcttgggagtgttgatctctctgcactagctgttggagagagtaaagaagcagatgtgaggattttaagtctgacaatgatgttccgggagcggcctgaacttgtgctgccgattccattcaccaacaaaccaaagagcagtcttttcacactcaaaggaggaagcaagtaccgaaccaaattcacattcactgtctccaaaaacattgtctcaggcctcatgtacaccacctcagtctggaagactggtgtcaaagtgcacagttcaaaaagaatgcttggaacctttagccctcgaccagatccttatacatatgaaaccgaagaagatactaccccttcaggcatgtttgcaaggggctggtattttgtgagaacaaaatttctggatgatgatggaaaatgctatttggatgctagttactactttgaaatccagaagaactgggcagcaccctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

295

Amino Acids

33.1

Weight (kDa)

5.15

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	103 - 290	1.5e-73	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12520 FvH4_4g12520
malus_domestica	MD04G1025800.v1.1
prunus_persica	Prupe.1G175100_v2.0.a1 Prupe.1G175100_v2.0.a1
pyrus_communis	pycom04g02190
rosa_chinensis	RchiOBHm_Chr4g0411301 RchiOBHm_Chr4g0411311 RchiOBHm_Chr4g0411341
rosa_laevigata	RLG00000008364 RLG00000008367
rosa_multiflora	Rmu_sc0000543.1_g000034 Rmu_sc0000543.1_g000044 Rmu_sc0000543.1_g000052
rosa_roxburghii	Rroxscaffold_5G00355880 Rroxscaffold_5G00355930
rosa_rugosa	Rorug04G0110100 Rorug04G0110200
rosa_samantha	Rh4AG166700 Rh4AG167200 Rh4BG163700 Rh4BG164300 Rh4CG178500 Rh4CG178900 Rh4DG161500 Rh4DG161600 Rh4DG162000
rosa_wichuraiana	Rw0G005520 Rw4G013790 Rw4G013800 Rw4G013820 Rw4G013900 Rw4G013920 Rw5G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	517
AciI	CCGC	1 cut(s)	517
AclWI	GGATC	2 cut(s)	287, 722
AcsI	RAATTY	2 cut(s)	605, 806
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	2 cut(s)	596, 650
AfiI	CCNNNNNNNGG	1 cut(s)	663
AgsI	TTSAA	4 cut(s)	100, 325, 693, 857
AjuI	GAANNNNNNNTTGG	4 cut(s)	330, 362, 596, 628
AluBI	AGCT	6 cut(s)	20, 149, 277, 313, 376, 455
AluI	AGCT	6 cut(s)	20, 149, 277, 313, 376, 455
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	2 cut(s)	625, 640
Alw44I	GTGCAC	1 cut(s)	683
AlwI	GGATC	2 cut(s)	287, 722
AoxI	GGCC	3 cut(s)	349, 518, 640
ApaLI	GTGCAC	1 cut(s)	683
ApeKI	GCWGC	6 cut(s)	8, 137, 373, 418, 532, 875
ApoI	RAATTY	2 cut(s)	605, 806
ArsI	GACNNNNNNTTYG	2 cut(s)	618, 650
Asp700I	GAANNNNTTC	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	3 cut(s)	136, 248, 538
BaeGI	GKGCMC	1 cut(s)	687
BbsI	GAAGAC	1 cut(s)	674
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	4 cut(s)	124, 385, 430, 519
BccI	CCATC	1 cut(s)	815
BceAI	ACGGC	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	625, 640
BfaI	CTAG	2 cut(s)	452, 843
BfuAI	ACCTGC	1 cut(s)	224
BisI	GCNGC	7 cut(s)	9, 138, 374, 419, 518, 533, 876
BlsI	GCNGC	7 cut(s)	10, 139, 375, 420, 519, 534, 877
Bme1390I	CCNGG	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	352, 709
BmrFI	CCNGG	1 cut(s)	512
BmrI	ACTGGG	1 cut(s)	880
BmsI	GCATC	3 cut(s)	220, 262, 829
BmuI	ACTGGG	1 cut(s)	880
BoxI	GACNNNNGTC	1 cut(s)	674
BpiI	GAAGAC	1 cut(s)	674
BpuEI	CTTGAG	4 cut(s)	39, 168, 350, 398
BpuMI	CCSGG	1 cut(s)	512
BsaJI	CCNNGG	2 cut(s)	12, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	663
Bse1I	ACTGG	2 cut(s)	676, 875
BseDI	CCNNGG	2 cut(s)	12, 141
BseGI	GGATG	4 cut(s)	235, 313, 820, 844
BseLI	CCNNNNNNNGG	1 cut(s)	663
BseMII	CTCAG	2 cut(s)	651, 672
BseNI	ACTGG	2 cut(s)	676, 875
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	4 cut(s)	124, 385, 430, 519
BsgI	GTGCAG	3 cut(s)	80, 209, 432
BshFI	GGCC	3 cut(s)	351, 520, 642
BsiHKAI	GWGCWC	1 cut(s)	687
BsiSI	CCGG	1 cut(s)	511
BslI	CCNNNNNNNGG	1 cut(s)	663
BsmAI	GTCTC	2 cut(s)	625, 640
BsmI	GAATGC	1 cut(s)	705
BsnI	GGCC	3 cut(s)	351, 520, 642
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	3 cut(s)	292, 439, 727
BspACI	CCGC	1 cut(s)	517
BspANI	GGCC	3 cut(s)	351, 520, 642
BspCNI	CTCAG	2 cut(s)	650, 671
BspLI	GGNNCC	2 cut(s)	352, 709
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	2 cut(s)	287, 722
BsrBI	CCGCTC	1 cut(s)	517
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	2 cut(s)	676, 875
BssECI	CCNNGG	2 cut(s)	12, 141
BssMI	GATC	3 cut(s)	292, 439, 727
Bst4CI	ACNGT	2 cut(s)	619, 689
Bst6I	CTCTTC	1 cut(s)	297
BstAUI	TGTACA	1 cut(s)	648
BstC8I	GCNNGC	2 cut(s)	251, 315
BstDEI	CTNAG	2 cut(s)	637, 658
BstDSI	CCRYGG	2 cut(s)	12, 141
BstF5I	GGATG	4 cut(s)	235, 313, 820, 844
BstKTI	GATC	3 cut(s)	295, 442, 730
BstMAI	GTCTC	2 cut(s)	625, 640
BstMBI	GATC	3 cut(s)	292, 439, 727
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 26, 146, 155, 246
BstNSI	RCATGY	1 cut(s)	775
BstPAI	GACNNNNGTC	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	687
BstV1I	GCAGC	4 cut(s)	124, 385, 430, 519
BstV2I	GAAGAC	1 cut(s)	674
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BsuRI	GGCC	3 cut(s)	351, 520, 642
BtgI	CCRYGG	2 cut(s)	12, 141
BtsCI	GGATG	4 cut(s)	235, 313, 820, 844
BtsIMutI	CAGTG	1 cut(s)	615
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	251, 315
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	595, 649
CviAII	CATG	3 cut(s)	260, 646, 772
CviQI	GTAC	2 cut(s)	595, 649
DdeI	CTNAG	2 cut(s)	637, 658
DpnI	GATC	3 cut(s)	294, 441, 729
DpnII	GATC	3 cut(s)	292, 439, 727
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	642
Eco57I	CTGAAG	1 cut(s)	750
FaeI	CATG	3 cut(s)	263, 649, 775
FatI	CATG	3 cut(s)	259, 645, 771
FauNDI	CATATG	1 cut(s)	739
Fnu4HI	GCNGC	7 cut(s)	9, 138, 374, 419, 518, 533, 876
FokI	GGATG	4 cut(s)	242, 320, 827, 851
Fsp4HI	GCNGC	7 cut(s)	9, 138, 374, 419, 518, 533, 876
FspBI	CTAG	2 cut(s)	452, 843
GluI	GCNGC	7 cut(s)	9, 138, 374, 419, 518, 533, 876
HaeIII	GGCC	3 cut(s)	351, 520, 642
HapII	CCGG	1 cut(s)	511
Hin1II	CATG	3 cut(s)	263, 649, 775
HinfI	GANTC	1 cut(s)	538
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	3 cut(s)	136, 248, 538
Hpy166II	GTNNAC	2 cut(s)	651, 685
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	5 cut(s)	296, 664, 812, 862, 885
Hpy8I	GTNNAC	2 cut(s)	651, 685
HpyAV	CCTTC	4 cut(s)	87, 106, 376, 774
HpyCH4III	ACNGT	2 cut(s)	619, 689
HpyCH4V	TGCA	9 cut(s)	29, 61, 158, 190, 233, 253, 449, 685, 779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 26, 146, 155, 246
HpyF3I	CTNAG	2 cut(s)	637, 658
Hsp92II	CATG	3 cut(s)	263, 649, 775
Kzo9I	GATC	3 cut(s)	292, 439, 727
LmnI	GCTCC	2 cut(s)	370, 514
Lsp1109I	GCAGC	4 cut(s)	124, 385, 430, 519
LweI	GCATC	3 cut(s)	220, 262, 829
MaeI	CTAG	2 cut(s)	452, 843
MaeIII	GTNAC	2 cut(s)	329, 845
MalI	GATC	3 cut(s)	294, 441, 729
MbiI	CCGCTC	1 cut(s)	517
MboI	GATC	3 cut(s)	292, 439, 727
MboII	GAAGA	6 cut(s)	72, 314, 679, 761, 764, 877
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	3 cut(s)	338, 605, 806
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	9 cut(s)	114, 280, 298, 399, 477, 578, 653, 667, 729
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	3 cut(s)	204, 279, 491
MslI	CAYNNNNRTG	2 cut(s)	258, 325
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	705
MwoI	GCNNNNNNNGC	5 cut(s)	17, 26, 146, 155, 246
NciI	CCSGG	1 cut(s)	512
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	3 cut(s)	292, 439, 727
NlaIII	CATG	3 cut(s)	263, 649, 775
NlaIV	GGNNCC	2 cut(s)	352, 709
NmuCI	GTSAC	1 cut(s)	329
NspI	RCATGY	1 cut(s)	775
PaqCI	CACCTGC	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	642
PctI	GAATGC	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	538
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	7 cut(s)	10, 139, 375, 420, 519, 534, 877
PshAI	GACNNNNGTC	1 cut(s)	674
PspN4I	GGNNCC	2 cut(s)	352, 709
PspPI	GGNCC	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	727
RsaI	GTAC	2 cut(s)	596, 650
RsaNI	GTAC	2 cut(s)	595, 649
RseI	CAYNNNNRTG	2 cut(s)	258, 325
SaqAI	TTAA	3 cut(s)	204, 279, 491
SatI	GCNGC	7 cut(s)	9, 138, 374, 419, 518, 533, 876
Sau3AI	GATC	3 cut(s)	292, 439, 727
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	3 cut(s)	220, 262, 829
SmiMI	CAYNNNNRTG	2 cut(s)	258, 325
SmlI	CTYRAG	4 cut(s)	54, 183, 365, 377
SmoI	CTYRAG	4 cut(s)	54, 183, 365, 377
Sse9I	AATT	3 cut(s)	338, 605, 806
SseBI	AGGCCT	1 cut(s)	642
SsiI	CCGC	1 cut(s)	517
SspMI	CTAG	2 cut(s)	452, 843
StuI	AGGCCT	1 cut(s)	642
StyD4I	CCNGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	619, 689
TaqI	TCGA	1 cut(s)	721
TasI	AATT	3 cut(s)	338, 605, 806
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	3 cut(s)	204, 279, 491
Tru9I	TTAA	3 cut(s)	204, 279, 491
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	6 cut(s)	8, 137, 373, 418, 532, 875
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	3 cut(s)	72, 315, 756
TspRI	CASTG	1 cut(s)	622
VneI	GTGCAC	1 cut(s)	683
XapI	RAATTY	2 cut(s)	605, 806
XceI	RCATGY	1 cut(s)	775
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	2 cut(s)	452, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.