Rmu_sc0000780.1_g000014

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000780.1
OG0006929
Physical Location & Seq
Reverse (-)
82795 .. 83109
315 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
atgtttgcaccctcaatccctagcttgaacgatccctgcttattctatactaacaatgattcttttcagggtttaaattggcgattgcttttgcacgtatcaactttgctggagaaggctttccgcgcttgggagattactcttctcaacccaatttggatacattcgagagtttccggcaagccgttttacccgattttgcataggattgatgttggggttgtcattgatttggagcttgctagaacagaggactcgactttgactatagccggggcggtgcagtctcagaagctggccgtgagggctatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006325 GO:0006355 GO:0006464 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006807 GO:0006810 GO:0006833 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0007623 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009645 GO:0009649 GO:0009687 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009881 GO:0009883 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010029 GO:0010033 GO:0010114 GO:0010148 GO:0010161 GO:0010202 GO:0010218 GO:0010244 GO:0010374 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010617 GO:0010629 GO:0015979 GO:0016043 GO:0016604 GO:0017006 GO:0017007 GO:0017012 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019752 GO:0023052 GO:0030003 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031516 GO:0031517 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0036211 GO:0038023 GO:0042044 GO:0042221 GO:0042592 GO:0042752 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043288 GO:0043412 GO:0043436 GO:0043565 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048511 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051480 GO:0051606 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071395 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071495 GO:0071704 GO:0071840 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0090558 GO:0097159 GO:0098771 GO:0104004 GO:1900140 GO:1901363 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:1902644 GO:1902679 GO:1903506 GO:1903507 GO:1990841 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

104

Amino Acids

11.75

Weight (kDa)

6.82

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 24 - 80 4.1e-12 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 126
AciI CCGC 2 cut(s) 124, 278
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 1 cut(s) 28
AluBI AGCT 3 cut(s) 24, 238, 295
AluI AGCT 3 cut(s) 24, 238, 295
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 295
AoxI GGCC 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 274
BceAI ACGGC 2 cut(s) 169, 284
BciVI GTATCC 1 cut(s) 153
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 2 cut(s) 21, 243
BfmI CTRYAG 1 cut(s) 267
BfuI GTATCC 1 cut(s) 153
BglI GCCNNNNNGGC 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 274
BsaAI YACGTR 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 1 cut(s) 299
BsiSI CCGG 2 cut(s) 177, 273
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 291
BsnI GGCC 1 cut(s) 299
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 2 cut(s) 124, 278
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 1 cut(s) 126
BspPI GGATC 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 3 cut(s) 182, 240, 297
BstDEI CTNAG 1 cut(s) 288
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 125, 305
BstSCI CCNGG 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 126
BsuI GTATCC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 299
Cac8I GCNNGC 3 cut(s) 182, 240, 297
CaiI CAGNNNCTG 1 cut(s) 295
CfoI GCGC 1 cut(s) 128
CviJI RGCY 8 cut(s) 24, 119, 184, 238, 272, 295, 299, 308
CviKI_1 RGCY 8 cut(s) 24, 119, 184, 238, 272, 295, 299, 308
DdeI CTNAG 1 cut(s) 288
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
DraI TTTAAA 1 cut(s) 75
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
FaiI YATR 3 cut(s) 48, 204, 269
FspBI CTAG 2 cut(s) 21, 243
GlaI GCGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 1 cut(s) 299
HapII CCGG 2 cut(s) 177, 273
HhaI GCGC 1 cut(s) 128
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 2 cut(s) 59, 254
HpaII CCGG 2 cut(s) 177, 273
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 4 cut(s) 8, 94, 202, 283
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 305
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 96
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 6 cut(s) 49, 53, 95, 190, 281, 286
MaeI CTAG 2 cut(s) 21, 243
MaeII ACGT 1 cut(s) 96
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 1 cut(s) 134
MluCI AATT 2 cut(s) 76, 153
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 3 cut(s) 22, 244, 297
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 1 cut(s) 74
MspI CCGG 2 cut(s) 177, 273
MspR9I CCNGG 1 cut(s) 274
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 125, 305
NciI CCSGG 1 cut(s) 274
NdeII GATC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 59
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 295
SaqAI TTAA 1 cut(s) 74
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 274
SetI ASST 4 cut(s) 26, 99, 240, 297
SfcI CTRYAG 1 cut(s) 267
Sse9I AATT 2 cut(s) 76, 153
SsiI CCGC 2 cut(s) 124, 278
SspMI CTAG 2 cut(s) 21, 243
StyD4I CCNGG 1 cut(s) 272
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 167, 257
TasI AATT 2 cut(s) 76, 153
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 2 cut(s) 21, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.