Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000805.1

Orthogroup ID

OG0003840

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1344

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atggcggagaggaagagcagcaagaagccccaaagcctcaacgacagtcactatcgtctcctccaagacctcagttctgctcctcccaagccctccggtactgcaaccctaaatcaactcaatcgcttttgctttctctctgcttatttttgggggttttcattttttagggtttttttttcttcttatgaggtttttgtttcgtttgtggatttggatttggatggaatcgcagagcaaggaaaggcgactaaggtaaggattgaaggcgcgcgccgtctctgtaagattcgagtggcttccgatgatgacgatgatcatggtgagggctttaatgatgacgacgcgcccagtttctccgggattgctgattttgagtcgccgccgcagccgcggaggagtgaagttggaaatggcggtggaaatgagattagggggattttagatgacttgagctccaggcttgagtttttgtcaatcgagaggaagggagccagaaaatctaataaggttgaagattcggggatttcgaaggaagttgatcgggtaaagaaagagaaagttgagtacaagaatgcggcgccttcgttttcgattgcttctgacttgtctgattcctctgctgagaccagtaaaactggtggaaagggagttgagagtgtggtggatgagtatgaagagaaaagtcgttttcgatgcaagttcgaagaggctgatgatgacagagattgtgtggttgtgagggctaagaagacggataaacaagtggggaggcggggtggtggtagctataaagagtactatgattgtgatgaggataacgtggttgatgattctgttccggaggatgatggttctatcactctgagtggtctcacatatacttacaaattacctgggaagattgcaaagatgttgtttccgcatcagcgcgaaggcttgaagtggctatgggctctgcattgccagggtaagggaggaatcttaggagatgacatgggtttgggtaaaacaatgcagatttgtggctatttagctggattatttcattcacgcttgattaaaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

356

Amino Acids

39.61

Weight (kDa)

5.61

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	309 - 351	2.4e-11	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63950 AT5G63950
fragaria_vesca	FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690
malus_domestica	MD15G1135400.v1.1 MD15G1135700.v1.1
prunus_persica	Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1
pyrus_communis	pycom01g00590 pycom15g12200 pycom15g12220
rosa_chinensis	RchiOBHm_Chr2g0122191
rosa_laevigata	RLG00000018669
rosa_multiflora	Rmu_co7987670.1_g000001 Rmu_co8056046.1_g000001 Rmu_sc0000805.1_g000001 Rmu_sc0003133.1_g000012 Rmu_sc0004574.1_g000007 Rmu_sc0013150.1_g000001 Rmu_sc0025362.1_g000002
rosa_roxburghii	Rroxscaffold_2G00121780
rosa_rugosa	Rorug02G0237100
rosa_samantha	Rh2AG295600 Rh2BG304600 Rh2CG282900 Rh2DG319500
rosa_wichuraiana	Rw2G023540 Rw2G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	580
AccII	CGCG	5 cut(s)	272, 274, 347, 394, 933
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	9 cut(s)	5, 383, 386, 392, 394, 417, 578, 775, 923
AcyI	GRCGYC	1 cut(s)	581
AfaI	GTAC	3 cut(s)	100, 569, 800
AfiI	CCNNNNNNNGG	1 cut(s)	973
AgsI	TTSAA	3 cut(s)	266, 515, 943
AjnI	CCWGG	3 cut(s)	458, 895, 966
AluBI	AGCT	3 cut(s)	456, 789, 1037
AluI	AGCT	3 cut(s)	456, 789, 1037
Alw21I	GWGCWC	1 cut(s)	458
Alw26I	GTCTC	4 cut(s)	62, 284, 620, 878
Aor13HI	TCCGGA	1 cut(s)	841
ApeKI	GCWGC	2 cut(s)	18, 388
AspLEI	GCGC	6 cut(s)	272, 274, 276, 349, 583, 933
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	335
AsuII	TTCGAA	2 cut(s)	530, 705
BanI	GGYRCC	1 cut(s)	580
BanII	GRGCYC	2 cut(s)	458, 958
BbsI	GAAGAC	1 cut(s)	758
Bbv12I	GWGCWC	1 cut(s)	458
BbvI	GCAGC	2 cut(s)	30, 400
BccI	CCATC	2 cut(s)	218, 845
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	3 cut(s)	460, 897, 968
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	4 cut(s)	62, 284, 620, 878
BfoI	RGCGCY	1 cut(s)	584
BisI	GCNGC	6 cut(s)	19, 383, 386, 389, 392, 579
BlsI	GCNGC	6 cut(s)	20, 384, 387, 390, 393, 580
BmcAI	AGTACT	1 cut(s)	800
Bme1390I	CCNGG	4 cut(s)	361, 460, 897, 968
BmiI	GGNNCC	2 cut(s)	493, 582
BmrFI	CCNGG	4 cut(s)	361, 460, 897, 968
BmrI	ACTGGG	1 cut(s)	345
BmsI	GCATC	2 cut(s)	686, 934
BmuI	ACTGGG	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	758
BpmI	CTGGAG	1 cut(s)	442
Bpu14I	TTCGAA	2 cut(s)	530, 705
BpuEI	CTTGAG	2 cut(s)	472, 485
BpuMI	CCSGG	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	581
BsaI	GGTCTC	2 cut(s)	620, 878
BsaJI	CCNNGG	3 cut(s)	392, 896, 967
BsaWI	WCCGGW	2 cut(s)	95, 841
BsaXI	ACNNNNNCTCC	4 cut(s)	440, 470, 763, 793
Bsc4I	CCNNNNNNNGG	1 cut(s)	973
Bse1I	ACTGG	3 cut(s)	351, 630, 643
Bse3DI	GCAATG	1 cut(s)	961
BseAI	TCCGGA	1 cut(s)	841
BseBI	CCWGG	3 cut(s)	460, 897, 968
BseDI	CCNNGG	3 cut(s)	392, 896, 967
BseGI	GGATG	3 cut(s)	229, 673, 853
BseLI	CCNNNNNNNGG	1 cut(s)	973
BseMI	GCAATG	1 cut(s)	961
BseMII	CTCAG	3 cut(s)	85, 615, 857
BseNI	ACTGG	3 cut(s)	351, 630, 643
BsePI	GCGCGC	2 cut(s)	270, 272
BseRI	GAGGAG	3 cut(s)	50, 72, 412
BseXI	GCAGC	2 cut(s)	30, 400
Bsh1236I	CGCG	5 cut(s)	272, 274, 347, 394, 933
BshNI	GGYRCC	1 cut(s)	580
BsiHKAI	GWGCWC	1 cut(s)	458
BsiSI	CCGG	3 cut(s)	96, 360, 842
BslI	CCNNNNNNNGG	1 cut(s)	973
BsmAI	GTCTC	4 cut(s)	62, 284, 620, 878
BsmBI	CGTCTC	2 cut(s)	62, 284
BsmI	GAATGC	1 cut(s)	580
Bso31I	GGTCTC	2 cut(s)	620, 878
Bsp119I	TTCGAA	2 cut(s)	530, 705
Bsp1286I	GDGCHC	2 cut(s)	458, 958
Bsp13I	TCCGGA	1 cut(s)	841
Bsp143I	GATC	2 cut(s)	316, 541
BspACI	CCGC	9 cut(s)	5, 383, 386, 392, 394, 417, 578, 775, 923
BspCNI	CTCAG	3 cut(s)	84, 616, 858
BspEI	TCCGGA	1 cut(s)	841
BspFNI	CGCG	5 cut(s)	272, 274, 347, 394, 933
BspLI	GGNNCC	2 cut(s)	493, 582
BspQI	GCTCTTC	1 cut(s)	8
BspT104I	TTCGAA	2 cut(s)	530, 705
BspT107I	GGYRCC	1 cut(s)	580
BspTNI	GGTCTC	2 cut(s)	620, 878
BsrDI	GCAATG	1 cut(s)	961
BsrI	ACTGG	3 cut(s)	351, 630, 643
BssECI	CCNNGG	3 cut(s)	392, 896, 967
BssHII	GCGCGC	2 cut(s)	270, 272
BssMI	GATC	2 cut(s)	316, 541
BssNI	GRCGYC	1 cut(s)	581
Bst2UI	CCWGG	3 cut(s)	460, 897, 968
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	3 cut(s)	8, 672, 702
BstACI	GRCGYC	1 cut(s)	581
BstBI	TTCGAA	2 cut(s)	530, 705
BstC8I	GCNNGC	2 cut(s)	272, 274
BstDEI	CTNAG	6 cut(s)	71, 252, 624, 747, 866, 985
BstDSI	CCRYGG	1 cut(s)	392
BstF5I	GGATG	3 cut(s)	229, 673, 853
BstFNI	CGCG	5 cut(s)	272, 274, 347, 394, 933
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	6 cut(s)	272, 274, 276, 349, 583, 933
BstKTI	GATC	2 cut(s)	319, 544
BstMAI	GTCTC	4 cut(s)	62, 284, 620, 878
BstMBI	GATC	2 cut(s)	316, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	388, 391
BstNI	CCWGG	3 cut(s)	460, 897, 968
BstSCI	CCNGG	4 cut(s)	359, 458, 895, 966
BstUI	CGCG	5 cut(s)	272, 274, 347, 394, 933
BstV1I	GCAGC	2 cut(s)	30, 400
BstV2I	GAAGAC	1 cut(s)	758
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	3 cut(s)	229, 673, 853
Cac8I	GCNNGC	2 cut(s)	272, 274
CfoI	GCGC	6 cut(s)	272, 274, 276, 349, 583, 933
Cfr42I	CCGCGG	1 cut(s)	395
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	3 cut(s)	99, 568, 799
CviAII	CATG	2 cut(s)	320, 997
CviQI	GTAC	3 cut(s)	99, 568, 799
DdeI	CTNAG	6 cut(s)	71, 252, 624, 747, 866, 985
DinI	GGCGCC	1 cut(s)	582
DpnI	GATC	2 cut(s)	318, 543
DpnII	GATC	2 cut(s)	316, 541
Eam1104I	CTCTTC	3 cut(s)	8, 672, 702
EarI	CTCTTC	3 cut(s)	8, 672, 702
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	456
Eco24I	GRGCYC	2 cut(s)	458, 958
Eco31I	GGTCTC	2 cut(s)	620, 878
Eco53kI	GAGCTC	1 cut(s)	456
EcoICRI	GAGCTC	1 cut(s)	456
EcoRII	CCWGG	3 cut(s)	458, 895, 966
EcoT38I	GRGCYC	2 cut(s)	458, 958
EgeI	GGCGCC	1 cut(s)	582
EheI	GGCGCC	1 cut(s)	582
Esp3I	CGTCTC	2 cut(s)	62, 284
FaeI	CATG	2 cut(s)	323, 1000
FaiI	YATR	9 cut(s)	189, 321, 675, 792, 804, 880, 882, 952, 998
FatI	CATG	2 cut(s)	319, 996
FauI	CCCGC	1 cut(s)	768
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	6 cut(s)	19, 383, 386, 389, 392, 579
FokI	GGATG	3 cut(s)	236, 680, 860
FriOI	GRGCYC	2 cut(s)	458, 958
Fsp4HI	GCNGC	6 cut(s)	19, 383, 386, 389, 392, 579
GlaI	GCGC	6 cut(s)	271, 273, 275, 348, 582, 932
GluI	GCNGC	6 cut(s)	19, 383, 386, 389, 392, 579
GsuI	CTGGAG	1 cut(s)	442
HaeII	RGCGCY	1 cut(s)	584
HapII	CCGG	3 cut(s)	96, 360, 842
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	6 cut(s)	272, 274, 276, 349, 583, 933
Hin1I	GRCGYC	1 cut(s)	581
Hin1II	CATG	2 cut(s)	323, 1000
Hin6I	GCGC	6 cut(s)	270, 272, 274, 347, 581, 931
HinP1I	GCGC	6 cut(s)	270, 272, 274, 347, 581, 931
HinfI	GANTC	7 cut(s)	228, 289, 377, 518, 614, 833, 981
HpaII	CCGG	3 cut(s)	96, 360, 842
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	4 cut(s)	304, 604, 613, 867
Hpy188III	TCNNGA	2 cut(s)	481, 842
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	5 cut(s)	260, 481, 526, 594, 929
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	5 cut(s)	104, 699, 908, 961, 1018
HpyF10VI	GCNNNNNNNGC	2 cut(s)	388, 391
HpyF3I	CTNAG	6 cut(s)	71, 252, 624, 747, 866, 985
HpySE526I	ACGT	1 cut(s)	822
Hsp92I	GRCGYC	1 cut(s)	581
Hsp92II	CATG	2 cut(s)	323, 1000
HspAI	GCGC	6 cut(s)	270, 272, 274, 347, 581, 931
KasI	GGCGCC	1 cut(s)	580
Kpn2I	TCCGGA	1 cut(s)	841
Ksp22I	TGATCA	1 cut(s)	316
KspI	CCGCGG	1 cut(s)	395
Kzo9I	GATC	2 cut(s)	316, 541
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	3 cut(s)	85, 461, 491
Lsp1109I	GCAGC	2 cut(s)	30, 400
LweI	GCATC	2 cut(s)	686, 934
MaeII	ACGT	1 cut(s)	822
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	2 cut(s)	318, 543
MboI	GATC	2 cut(s)	316, 541
MboII	GAAGA	7 cut(s)	25, 174, 527, 689, 719, 763, 913
MhlI	GDGCHC	2 cut(s)	458, 958
MluCI	AATT	1 cut(s)	890
Mly113I	GGCGCC	1 cut(s)	581
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	388
MroI	TCCGGA	1 cut(s)	841
MseI	TTAA	2 cut(s)	333, 1062
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	3 cut(s)	96, 360, 842
MspR9I	CCNGG	4 cut(s)	361, 460, 897, 968
Mva1269I	GAATGC	1 cut(s)	580
MvaI	CCWGG	3 cut(s)	460, 897, 968
MvnI	CGCG	5 cut(s)	272, 274, 347, 394, 933
MwoI	GCNNNNNNNGC	2 cut(s)	388, 391
NarI	GGCGCC	1 cut(s)	581
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	2 cut(s)	316, 541
NlaIII	CATG	2 cut(s)	323, 1000
NlaIV	GGNNCC	2 cut(s)	493, 582
NmuCI	GTSAC	1 cut(s)	47
NspV	TTCGAA	2 cut(s)	530, 705
PauI	GCGCGC	2 cut(s)	270, 272
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	527
PctI	GAATGC	1 cut(s)	580
PfeI	GAWTC	6 cut(s)	228, 289, 518, 614, 833, 981
PfoI	TCCNGGA	1 cut(s)	359
PkrI	GCNGC	6 cut(s)	20, 384, 387, 390, 393, 580
PleI	GAGTC	1 cut(s)	385
PluTI	GGCGCC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	385
Psp124BI	GAGCTC	1 cut(s)	458
Psp6I	CCWGG	3 cut(s)	458, 895, 966
PspGI	CCWGG	3 cut(s)	458, 895, 966
PspN4I	GGNNCC	2 cut(s)	493, 582
PteI	GCGCGC	2 cut(s)	270, 272
RsaI	GTAC	3 cut(s)	100, 569, 800
RsaNI	GTAC	3 cut(s)	99, 568, 799
SacI	GAGCTC	1 cut(s)	458
SacII	CCGCGG	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	333, 1062
SatI	GCNGC	6 cut(s)	19, 383, 386, 389, 392, 579
Sau3AI	GATC	2 cut(s)	316, 541
ScaI	AGTACT	1 cut(s)	800
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	4 cut(s)	361, 460, 897, 968
SduI	GDGCHC	2 cut(s)	458, 958
SetI	ASST	9 cut(s)	72, 195, 258, 458, 513, 791, 825, 898, 1039
SfaNI	GCATC	2 cut(s)	686, 934
SfoI	GGCGCC	1 cut(s)	582
Sfr303I	CCGCGG	1 cut(s)	395
SfuI	TTCGAA	2 cut(s)	530, 705
SgrBI	CCGCGG	1 cut(s)	395
SmlI	CTYRAG	2 cut(s)	451, 464
SmoI	CTYRAG	2 cut(s)	451, 464
Sse9I	AATT	1 cut(s)	890
SsiI	CCGC	9 cut(s)	5, 383, 386, 392, 394, 417, 578, 775, 923
SspDI	GGCGCC	1 cut(s)	580
SstI	GAGCTC	1 cut(s)	458
StyD4I	CCNGG	4 cut(s)	359, 458, 895, 966
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	1 cut(s)	825
TaqI	TCGA	6 cut(s)	292, 480, 530, 593, 694, 705
TasI	AATT	1 cut(s)	890
TatI	WGTACW	2 cut(s)	567, 798
TauI	GCSGC	4 cut(s)	385, 388, 394, 581
TfiI	GAWTC	6 cut(s)	228, 289, 518, 614, 833, 981
Tru1I	TTAA	2 cut(s)	333, 1062
Tru9I	TTAA	2 cut(s)	333, 1062
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	2 cut(s)	18, 388
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	150, 690, 1037
TspGWI	ACGGA	1 cut(s)	770
ZrmI	AGTACT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.