Rmu_sc0000954.1_g000002

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000954.1
OG0002288
Physical Location & Seq
Reverse (-)
2195 .. 8194
6000 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2976 bp
atgggcaacaaaatcaccgacgaactattatccaccgttcgttcaatcgtcgattccggctactccgacatggacataatccgagccctacacatggccaacaacgacgtcaccgccgcgatcaacatcatcttcgacacccccacacccaaatctaaagaaaggtcagatttcgccagcagtcccaaaatctcgagtcctgaagtcgcgaattcgaagccgaacggcgccgattgccccgccagttcaggcgatgatgtagtaggtgacgtggagagttcggccggcagcgagtggtggttggtgggttgcggcgaggtggcggggttatcgacgtgtagagggaggaggatcaagccccgagacgaagtggatttcacatttcctttgaagatttcgccgtctcccggcaaggttttcgggaggggacggccggcggcggcgtgttcggagattgtgaggttctccacgacggattccggagagtgtttgatgaataatgtgtttggattgatggggttttcgcagattggacgaataccgaaggaatgggctcggtgtctgttgccacttgtgagagataagaaggttaaaatcgaggggcattgtaaatctgctcctgatgtcttgagcattatggacaccattctcttgtctataagtgtgtatatcaatagttctatgttctttaagcaaaagcagacctcacttaagacagccagtaattccacagaggaaacagtcgttcatcctctcccaacattgtttcagttgctaggcctaactcctttccagaaggcggaatttactcctggtgacttgtacacgagaaagcgccctttagaccaaaaggacagttctgggctttgtgcctcaattatacatgcaaataagcataaaaatccttctagaaatgaagatgaagttgaaaatgaggaatgtatttcagatgctgaggttgataacattgttggggttggagatagctctgagttagaggaaatggatcctcctgctgcacttctgtgtgaacttcgtccgtatcaaaagcaggctcttcattggatgatccaactagaaaagggaaaatgcatggatgaggcagcaatgactcttcacccttgttgggaggcatatcatcttgcagacaagagggaccgtattatatatttgaacgcattttctggtgacgcaacaacagaatttccaagcgcacttcaaatggccagaggaggaatcctagctgatgctatgggcctgggaaagacgattatgacaatagcactccttgttgctcattcaggacatggatcatcaggtagtcaacctgtgagccggtcctccagtgaagatattgaagccagtgacatgtcagaatattcatcaaaactcccaaaggcggcagagattgaatctcatgtgcaacctggatctgtatcagtatatgttcattatggacaaagtagaccaagggatgcgactcttttagccctaagcgatgttgtgatcactacatatggcgttttagcatcagaattttctacagagaattctaaggacaatgggggactttactcagttagttggtttagagtggttcttgatgaagcgcacaccataaaatcctctaaaagccaaatctctattgctgctgctgctttagttgctggtcgccgatggtgtcttactggcacccctatacagaacaatctggaggacatttatagtctactccggtttttgagggtagaaccttgggcgaattgggcttggtggaataaactcatccagaaaccctttgaggagggtgatgagagagggttaaggctggttcaatctatcttaaagacgattatgttaaggagaaccaagtttagcactgatcgtgaaggcaggcctattttagtccttccgcctgctgatattcaggtggtttactgtgaactcacagaaactgaaaaagacttttatgaggccttgtttaaaagatcaaaggtaaaatttgatcaatttgttgagcaaggacgggttcttcataattatgcgtccatattggaattacttttacgccttcgccaatgttgtgatcacccatttcttgtgatgagtcgaggtgatacacaagaattttcagatctgaataagcttgcaagacattttctaaaaggcagccagaattctgtggaaggggaagccaaagatgtgccttcacgggcttatgttcaggaagttgttgaagaaatgcgcaagggggaacagggagagtgtcccatatgtcttgaagcatttgaagatgcagtattgacaacttgtgctcatcgcttatgccgagaatgtctcttggcaagttggcggaattcaacttctggcttatgtccagtttgcaggaagagtctaagtaagcaagatcttgttacagcaccaactgacagtcggttccatgttgatattgagaaaaactgggtggaatcatccaaaatagttattcttttgcgtgaacttgaatgtcttcgttcgtcaggctcaaagagcattgtcttcagccagtggacggcctttctggacctcctgcagatacctctttctcggagtaacattccatttttgcgcctggatgggactctgaatcaacagcagcgcgaaaaagttttaaaacagttttcagaagacagtgacattctggtgttgctaatgtcactgaaggccggaggagttggaataaatttgacagcagcatccaatgcctttgtcttggatccatggtggaatccagctgtagaggaacaagcggtcatgcgtattcatcgcatcggacaaacaaaaagtgtgatgatcaaacgatttatcgtgaagggaacagtcgaggaaagaatggaagcagtgcaagctcgtaaacagcggttaatttctggcgccttgactgaccaagaagttcgttcggctcgcatagaagaactaaagatgctttttacttga

Protein Analysis

991

Amino Acids

110.25

Weight (kDa)

5.93

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_RAD5A PF24559 5 - 48 5.4e-25 DNA repair protein RAD5A UBA domain
HIRAN PF08797 103 - 220 1.1e-11 HIRAN domain
SNF2-rel_dom PF00176 348 - 699 1.9e-62 SNF2-related domain
zf-C3HC4_3 PF13920 753 - 800 5e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 755 - 796 1.1e-07 Ring finger domain
zf-C3HC4_2 PF13923 755 - 795 4.9e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 756 - 793 1.1e-08 RING-type zinc-finger
zf-C3HC4 PF00097 756 - 795 1e-08 Zinc finger, C3HC4 type (RING finger)
Helicase_C PF00271 827 - 938 1.5e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 111
Acc16I TGCGCA 1 cut(s) 2246
AccB1I GGYRCC 3 cut(s) 227, 1691, 2912
AccI GTMKAC 2 cut(s) 1465, 1729
AccII CGCG 3 cut(s) 119, 209, 2640
AccIII TCCGGA 1 cut(s) 479
AclWI GGATC 8 cut(s) 359, 1001, 1014, 1063, 1318, 1438, 2750, 2763
AcoI YGGCCR 4 cut(s) 96, 282, 431, 1224
AcuI CTGAAG 3 cut(s) 222, 2524, 2720
AcyI GRCGYC 3 cut(s) 108, 228, 2913
AfaI GTAC 1 cut(s) 824
AfiI CCNNNNNNNGG 6 cut(s) 94, 407, 799, 1126, 1399, 2551
AflII CTTAAG 1 cut(s) 710
AflIII ACRYGT 2 cut(s) 335, 1368
AjiI CACGTC 2 cut(s) 271, 336
AjnI CCWGG 4 cut(s) 811, 1257, 1426, 2610
AleI CACNNNNGTG 1 cut(s) 1024
AluBI AGCT 5 cut(s) 987, 1244, 2146, 2774, 2888
AluI AGCT 5 cut(s) 987, 1244, 2146, 2774, 2888
Alw21I GWGCWC 1 cut(s) 2317
Alw26I GTCTC 3 cut(s) 357, 408, 2342
AlwI GGATC 8 cut(s) 359, 1001, 1014, 1063, 1318, 1438, 2750, 2763
AlwNI CAGNNNCTG 2 cut(s) 953, 1955
Ama87I CYCGRG 2 cut(s) 193, 360
Aor13HI TCCGGA 1 cut(s) 479
ApeKI GCWGC 9 cut(s) 288, 1016, 1103, 1649, 1652, 1655, 2169, 2635, 2732
Asp700I GAANNNNTTC 1 cut(s) 2508
AspLEI GCGC 8 cut(s) 230, 837, 1214, 1612, 2247, 2610, 2640, 2915
AspS9I GGNCC 4 cut(s) 1156, 1255, 1338, 2563
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 9 cut(s) 7, 103, 278, 827, 1109, 1199, 1820, 2081, 2126
AsuII TTCGAA 1 cut(s) 215
AvaI CYCGRG 2 cut(s) 193, 360
AvaII GGWCC 3 cut(s) 1156, 1338, 2563
BalI TGGCCA 2 cut(s) 98, 1226
BamHI GGATCC 2 cut(s) 1006, 2755
BanI GGYRCC 3 cut(s) 227, 1691, 2912
BanII GRGCYC 2 cut(s) 88, 556
BauI CACGAG 1 cut(s) 826
BbsI GAAGAC 3 cut(s) 2501, 2530, 2673
Bbv12I GWGCWC 1 cut(s) 2317
BbvCI CCTCAGC 1 cut(s) 954
BbvI GCAGC 9 cut(s) 300, 1003, 1115, 1636, 1639, 1642, 2181, 2647, 2744
BccI CCATC 3 cut(s) 508, 1671, 2609
BceAI ACGGC 4 cut(s) 241, 385, 446, 2568
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 4 cut(s) 813, 1259, 1428, 2612
BclI TGATCA 4 cut(s) 1506, 2005, 2086, 2832
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 3 cut(s) 357, 408, 2342
BfaI CTAG 4 cut(s) 776, 909, 1076, 1241
BfmI CTRYAG 3 cut(s) 1542, 2570, 2775
BfoI RGCGCY 3 cut(s) 231, 838, 2916
BfrI CTTAAG 1 cut(s) 710
BglII AGATCT 2 cut(s) 2134, 2407
Bme1390I CCNGG 5 cut(s) 408, 813, 1259, 1428, 2612
Bme18I GGWCC 3 cut(s) 1156, 1338, 2563
BmeT110I CYCGRG 2 cut(s) 193, 360
BmgBI CACGTC 2 cut(s) 271, 336
BmgT120I GGNCC 4 cut(s) 1156, 1255, 1338, 2563
BmiI GGNNCC 7 cut(s) 229, 1008, 1157, 1693, 2438, 2757, 2914
BmrFI CCNGG 5 cut(s) 408, 813, 1259, 1428, 2612
BmrI ACTGGG 1 cut(s) 2470
BmsI GCATC 8 cut(s) 940, 1237, 1465, 1538, 2284, 2744, 2817, 2952
BmuI ACTGGG 1 cut(s) 2470
BpiI GAAGAC 3 cut(s) 2501, 2530, 2673
BplI GAGNNNNNCTC 2 cut(s) 2322, 2354
BpmI CTGGAG 2 cut(s) 1327, 1733
Bpu10I CCTNAGC 2 cut(s) 954, 1493
Bpu14I TTCGAA 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 649
BpuMI CCSGG 1 cut(s) 408
BsaBI GATNNNNATC 2 cut(s) 125, 1435
BsaHI GRCGYC 3 cut(s) 108, 228, 2913
BsaJI CCNNGG 4 cut(s) 1258, 1469, 1754, 2759
BsaWI WCCGGW 2 cut(s) 479, 1734
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 407, 799, 1126, 1399, 2551
Bse118I RCCGGY 3 cut(s) 284, 433, 1335
Bse1I ACTGG 8 cut(s) 243, 720, 1344, 1362, 1693, 2378, 2465, 2545
Bse3DI GCAATG 1 cut(s) 1113
Bse8I GATNNNNATC 2 cut(s) 125, 1435
BseAI TCCGGA 1 cut(s) 479
BseBI CCWGG 4 cut(s) 813, 1259, 1428, 2612
BseDI CCNNGG 4 cut(s) 1258, 1469, 1754, 2759
BseGI GGATG 8 cut(s) 748, 1071, 1102, 1480, 1785, 2471, 2620, 2735
BseJI GATNNNNATC 2 cut(s) 125, 1435
BseLI CCNNNNNNNGG 6 cut(s) 94, 407, 799, 1126, 1399, 2551
BseMI GCAATG 1 cut(s) 1113
BseMII CTCAG 3 cut(s) 945, 981, 1590
BseNI ACTGG 8 cut(s) 243, 720, 1344, 1362, 1693, 2378, 2465, 2545
BseRI GAGGAG 4 cut(s) 361, 1245, 1817, 2724
BseX3I CGGCCG 2 cut(s) 282, 431
BseXI GCAGC 9 cut(s) 300, 1003, 1115, 1636, 1639, 1642, 2181, 2647, 2744
BsgI GTGCAG 1 cut(s) 1002
Bsh1236I CGCG 3 cut(s) 119, 209, 2640
Bsh1285I CGRYCG 2 cut(s) 285, 434
BshNI GGYRCC 3 cut(s) 227, 1691, 2912
BsiEI CGRYCG 2 cut(s) 285, 434
BsiHKAI GWGCWC 1 cut(s) 2317
BsiHKCI CYCGRG 2 cut(s) 193, 360
BsiSI CCGG 8 cut(s) 57, 285, 408, 434, 480, 1336, 1735, 2706
BslFI GGGAC 6 cut(s) 168, 441, 1169, 1581, 2253, 2632
BslI CCNNNNNNNGG 6 cut(s) 94, 407, 799, 1126, 1399, 2551
BsmAI GTCTC 3 cut(s) 357, 408, 2342
BsmBI CGTCTC 2 cut(s) 357, 408
BsmFI GGGAC 6 cut(s) 168, 441, 1169, 1581, 2253, 2632
BsoBI CYCGRG 2 cut(s) 193, 360
Bsp119I TTCGAA 1 cut(s) 215
Bsp1286I GDGCHC 3 cut(s) 88, 556, 2317
Bsp13I TCCGGA 1 cut(s) 479
Bsp1407I TGTACA 1 cut(s) 822
Bsp19I CCATGG 1 cut(s) 2759
Bsp68I TCGCGA 1 cut(s) 209
BspCNI CTCAG 3 cut(s) 946, 982, 1589
BspEI TCCGGA 1 cut(s) 479
BspFNI CGCG 3 cut(s) 119, 209, 2640
BspLI GGNNCC 7 cut(s) 229, 1008, 1157, 1693, 2438, 2757, 2914
BspMAI CTGCAG 1 cut(s) 2574
BspPI GGATC 8 cut(s) 359, 1001, 1014, 1063, 1318, 1438, 2750, 2763
BspQI GCTCTTC 1 cut(s) 1062
BspT104I TTCGAA 1 cut(s) 215
BspT107I GGYRCC 3 cut(s) 227, 1691, 2912
BspTI CTTAAG 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 1113
BsrFI RCCGGY 3 cut(s) 284, 433, 1335
BsrGI TGTACA 1 cut(s) 822
BsrI ACTGG 8 cut(s) 243, 720, 1344, 1362, 1693, 2378, 2465, 2545
BssAI RCCGGY 3 cut(s) 284, 433, 1335
BssECI CCNNGG 4 cut(s) 1258, 1469, 1754, 2759
BssNI GRCGYC 3 cut(s) 108, 228, 2913
BssSI CACGAG 1 cut(s) 826
BssT1I CCWWGG 3 cut(s) 1469, 1754, 2759
Bst2BI CACGAG 1 cut(s) 826
Bst2UI CCWGG 4 cut(s) 813, 1259, 1428, 2612
Bst4CI ACNGT 9 cut(s) 37, 742, 857, 1160, 1940, 2432, 2658, 2672, 2860
Bst6I CTCTTC 3 cut(s) 1062, 1119, 2384
BstACI GRCGYC 3 cut(s) 108, 228, 2913
BstAFI CTTAAG 1 cut(s) 710
BstAPI GCANNNNNTGC 1 cut(s) 2741
BstAUI TGTACA 1 cut(s) 822
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 9 cut(s) 178, 286, 435, 1053, 1895, 1917, 2148, 2886, 2944
BstDEI CTNAG 6 cut(s) 954, 990, 1493, 1554, 1576, 2396
BstDSI CCRYGG 1 cut(s) 2759
BstF5I GGATG 8 cut(s) 748, 1071, 1102, 1480, 1785, 2471, 2620, 2735
BstFNI CGCG 3 cut(s) 119, 209, 2640
BstH2I RGCGCY 3 cut(s) 231, 838, 2916
BstHHI GCGC 8 cut(s) 230, 837, 1214, 1612, 2247, 2610, 2640, 2915
BstMAI GTCTC 3 cut(s) 357, 408, 2342
BstMCI CGRYCG 2 cut(s) 285, 434
BstMWI GCNNNNNNNGC 7 cut(s) 234, 1655, 1664, 1766, 2529, 2741, 2885
BstNI CCWGG 4 cut(s) 813, 1259, 1428, 2612
BstNSI RCATGY 2 cut(s) 887, 1372
BstSCI CCNGG 5 cut(s) 406, 811, 1257, 1426, 2610
BstSFI CTRYAG 3 cut(s) 1542, 2570, 2775
BstUI CGCG 3 cut(s) 119, 209, 2640
BstV1I GCAGC 9 cut(s) 300, 1003, 1115, 1636, 1639, 1642, 2181, 2647, 2744
BstV2I GAAGAC 3 cut(s) 2501, 2530, 2673
BstX2I RGATCY 5 cut(s) 1006, 1430, 2134, 2407, 2755
BstYI RGATCY 5 cut(s) 1006, 1430, 2134, 2407, 2755
BstZI CGGCCG 2 cut(s) 282, 431
BtgI CCRYGG 1 cut(s) 2759
BtgZI GCGATG 4 cut(s) 267, 1512, 2303, 2789
BtrI CACGTC 2 cut(s) 271, 336
BtsCI GGATG 8 cut(s) 748, 1071, 1102, 1480, 1785, 2471, 2620, 2735
BtsI GCAGTG 1 cut(s) 2886
BtsIMutI CAGTG 7 cut(s) 1351, 1369, 1878, 2552, 2677, 2696, 2886
BtuMI TCGCGA 1 cut(s) 209
Cac8I GCNNGC 9 cut(s) 178, 286, 435, 1053, 1895, 1917, 2148, 2886, 2944
CaiI CAGNNNCTG 2 cut(s) 953, 1955
CfoI GCGC 8 cut(s) 230, 837, 1214, 1612, 2247, 2610, 2640, 2915
Cfr10I RCCGGY 3 cut(s) 284, 433, 1335
Cfr13I GGNCC 4 cut(s) 1156, 1255, 1338, 2563
CseI GACGC 2 cut(s) 1199, 2034
Csp6I GTAC 1 cut(s) 823
CviQI GTAC 1 cut(s) 823
DdeI CTNAG 6 cut(s) 954, 990, 1493, 1554, 1576, 2396
DinI GGCGCC 2 cut(s) 229, 2914
DraI TTTAAA 2 cut(s) 1984, 2652
EaeI YGGCCR 4 cut(s) 96, 282, 431, 1224
EagI CGGCCG 2 cut(s) 282, 431
Eam1104I CTCTTC 3 cut(s) 1062, 1119, 2384
EarI CTCTTC 3 cut(s) 1062, 1119, 2384
EciI GGCGGA 3 cut(s) 815, 1902, 2368
EclXI CGGCCG 2 cut(s) 282, 431
Eco130I CCWWGG 3 cut(s) 1469, 1754, 2759
Eco147I AGGCCT 3 cut(s) 780, 1897, 1976
Eco24I GRGCYC 2 cut(s) 88, 556
Eco47I GGWCC 3 cut(s) 1156, 1338, 2563
Eco52I CGGCCG 2 cut(s) 282, 431
Eco57I CTGAAG 3 cut(s) 222, 2524, 2720
Eco88I CYCGRG 2 cut(s) 193, 360
EcoRI GAATTC 4 cut(s) 211, 1549, 2176, 2356
EcoRII CCWGG 4 cut(s) 811, 1257, 1426, 2610
EcoT14I CCWWGG 3 cut(s) 1469, 1754, 2759
EcoT22I ATGCAT 1 cut(s) 1094
EcoT38I GRGCYC 2 cut(s) 88, 556
EgeI GGCGCC 2 cut(s) 229, 2914
EheI GGCGCC 2 cut(s) 229, 2914
ErhI CCWWGG 3 cut(s) 1469, 1754, 2759
Esp3I CGTCTC 2 cut(s) 357, 408
FaqI GGGAC 6 cut(s) 168, 441, 1169, 1581, 2253, 2632
FauI CCCGC 2 cut(s) 247, 316
FauNDI CATATG 2 cut(s) 1516, 2273
FbaI TGATCA 4 cut(s) 1506, 2005, 2086, 2832
FblI GTMKAC 2 cut(s) 1465, 1729
FokI GGATG 8 cut(s) 735, 1078, 1109, 1487, 1772, 2458, 2627, 2722
FriOI GRGCYC 2 cut(s) 88, 556
FspBI CTAG 4 cut(s) 776, 909, 1076, 1241
FspI TGCGCA 1 cut(s) 2246
GlaI GCGC 8 cut(s) 229, 836, 1213, 1611, 2246, 2609, 2639, 2914
GsuI CTGGAG 2 cut(s) 1327, 1733
HaeII RGCGCY 3 cut(s) 231, 838, 2916
HapII CCGG 8 cut(s) 57, 285, 408, 434, 480, 1336, 1735, 2706
HgaI GACGC 2 cut(s) 1199, 2034
HhaI GCGC 8 cut(s) 230, 837, 1214, 1612, 2247, 2610, 2640, 2915
Hin1I GRCGYC 3 cut(s) 108, 228, 2913
Hin6I GCGC 8 cut(s) 228, 835, 1212, 1610, 2245, 2608, 2638, 2913
HinP1I GCGC 8 cut(s) 228, 835, 1212, 1610, 2245, 2608, 2638, 2913
HincII GTYRAC 1 cut(s) 1325
HindII GTYRAC 1 cut(s) 1325
HindIII AAGCTT 1 cut(s) 2144
HpaII CCGG 8 cut(s) 57, 285, 408, 434, 480, 1336, 1735, 2706
HphI GGTGA 9 cut(s) 7, 103, 278, 827, 1109, 1199, 1820, 2081, 2126
Hpy99I CGWCG 5 cut(s) 23, 53, 110, 337, 475
HpyCH4III ACNGT 9 cut(s) 37, 742, 857, 1160, 1940, 2432, 2658, 2672, 2860
HpyCH4IV ACGT 3 cut(s) 108, 270, 335
HpyF10VI GCNNNNNNNGC 7 cut(s) 234, 1655, 1664, 1766, 2529, 2741, 2885
HpyF3I CTNAG 6 cut(s) 954, 990, 1493, 1554, 1576, 2396
HpySE526I ACGT 3 cut(s) 108, 270, 335
Hsp92I GRCGYC 3 cut(s) 108, 228, 2913
HspAI GCGC 8 cut(s) 228, 835, 1212, 1610, 2245, 2608, 2638, 2913
KasI GGCGCC 2 cut(s) 227, 2912
Kpn2I TCCGGA 1 cut(s) 479
KroI GCCGGC 2 cut(s) 284, 433
KroNI GCCGGC 2 cut(s) 286, 435
Ksp22I TGATCA 4 cut(s) 1506, 2005, 2086, 2832
LguI GCTCTTC 1 cut(s) 1062
LmnI GCTCC 1 cut(s) 622
Lsp1109I GCAGC 9 cut(s) 300, 1003, 1115, 1636, 1639, 1642, 2181, 2647, 2744
LweI GCATC 8 cut(s) 940, 1237, 1465, 1538, 2284, 2744, 2817, 2952
MaeI CTAG 4 cut(s) 776, 909, 1076, 1241
MaeII ACGT 3 cut(s) 108, 270, 335
MaeIII GTNAC 9 cut(s) 109, 266, 815, 1187, 1364, 2413, 2591, 2672, 2694
MflI RGATCY 5 cut(s) 1006, 1430, 2134, 2407, 2755
MhlI GDGCHC 3 cut(s) 88, 556, 2317
MlsI TGGCCA 2 cut(s) 98, 1226
MluNI TGGCCA 2 cut(s) 98, 1226
Mly113I GGCGCC 2 cut(s) 228, 2913
MlyI GAGTC 6 cut(s) 205, 1105, 1474, 2116, 2401, 2614
MmeI TCCRAC 4 cut(s) 90, 958, 1096, 2695
Mox20I TGGCCA 2 cut(s) 98, 1226
Mph1103I ATGCAT 1 cut(s) 1094
MroI TCCGGA 1 cut(s) 479
MroNI GCCGGC 2 cut(s) 284, 433
MroXI GAANNNNTTC 1 cut(s) 2508
MscI TGGCCA 2 cut(s) 98, 1226
MseI TTAA 9 cut(s) 591, 690, 711, 1823, 1844, 1859, 1983, 2651, 2903
MslI CAYNNNNRTG 3 cut(s) 1024, 2040, 2681
Msp20I TGGCCA 2 cut(s) 98, 1226
MspA1I CMGCKG 2 cut(s) 2774, 2899
MspCI CTTAAG 1 cut(s) 710
MspI CCGG 8 cut(s) 57, 285, 408, 434, 480, 1336, 1735, 2706
MspR9I CCNGG 5 cut(s) 408, 813, 1259, 1428, 2612
MvaI CCWGG 4 cut(s) 813, 1259, 1428, 2612
MvnI CGCG 3 cut(s) 119, 209, 2640
MwoI GCNNNNNNNGC 7 cut(s) 234, 1655, 1664, 1766, 2529, 2741, 2885
NaeI GCCGGC 2 cut(s) 286, 435
NarI GGCGCC 2 cut(s) 228, 2913
NciI CCSGG 1 cut(s) 408
NcoI CCATGG 1 cut(s) 2759
NdeI CATATG 2 cut(s) 1516, 2273
NgoMIV GCCGGC 2 cut(s) 284, 433
NlaIV GGNNCC 7 cut(s) 229, 1008, 1157, 1693, 2438, 2757, 2914
NmeAIII GCCGAG 1 cut(s) 2354
NmuCI GTSAC 7 cut(s) 109, 266, 815, 1187, 1364, 2672, 2694
NruI TCGCGA 1 cut(s) 209
NsbI TGCGCA 1 cut(s) 2246
NsiI ATGCAT 1 cut(s) 1094
NspI RCATGY 2 cut(s) 887, 1372
NspV TTCGAA 1 cut(s) 215
OliI CACNNNNGTG 1 cut(s) 1024
PaeR7I CTCGAG 1 cut(s) 193
PceI AGGCCT 3 cut(s) 780, 1897, 1976
PciI ACATGT 1 cut(s) 1368
PciSI GCTCTTC 1 cut(s) 1062
PcsI WCGNNNNNNNCGW 1 cut(s) 2326
PdiI GCCGGC 2 cut(s) 286, 435
PdmI GAANNNNTTC 1 cut(s) 2508
PfeI GAWTC 7 cut(s) 53, 476, 1236, 1412, 2468, 2626, 2767
PleI GAGTC 6 cut(s) 204, 1105, 1474, 2115, 2400, 2614
PluTI GGCGCC 2 cut(s) 231, 2916
PpsI GAGTC 6 cut(s) 204, 1105, 1474, 2115, 2400, 2614
PscI ACATGT 1 cut(s) 1368
Psp6I CCWGG 4 cut(s) 811, 1257, 1426, 2610
PspGI CCWGG 4 cut(s) 811, 1257, 1426, 2610
PspN4I GGNNCC 7 cut(s) 229, 1008, 1157, 1693, 2438, 2757, 2914
PspPI GGNCC 4 cut(s) 1156, 1255, 1338, 2563
PstI CTGCAG 1 cut(s) 2574
PstNI CAGNNNCTG 2 cut(s) 953, 1955
PsuI RGATCY 5 cut(s) 1006, 1430, 2134, 2407, 2755
PvuII CAGCTG 1 cut(s) 2774
RruI TCGCGA 1 cut(s) 209
RsaI GTAC 1 cut(s) 824
RsaNI GTAC 1 cut(s) 823
RseI CAYNNNNRTG 3 cut(s) 1024, 2040, 2681
SapI GCTCTTC 1 cut(s) 1062
SaqAI TTAA 9 cut(s) 591, 690, 711, 1823, 1844, 1859, 1983, 2651, 2903
Sau96I GGNCC 4 cut(s) 1156, 1255, 1338, 2563
SchI GAGTC 6 cut(s) 205, 1105, 1474, 2116, 2401, 2614
ScrFI CCNGG 5 cut(s) 408, 813, 1259, 1428, 2612
SduI GDGCHC 3 cut(s) 88, 556, 2317
SfaNI GCATC 8 cut(s) 940, 1237, 1465, 1538, 2284, 2744, 2817, 2952
SfcI CTRYAG 3 cut(s) 1542, 2570, 2775
SfoI GGCGCC 2 cut(s) 229, 2914
Sfr274I CTCGAG 1 cut(s) 193
SfuI TTCGAA 1 cut(s) 215
SinI GGWCC 3 cut(s) 1156, 1338, 2563
SlaI CTCGAG 1 cut(s) 193
SmiMI CAYNNNNRTG 3 cut(s) 1024, 2040, 2681
SmlI CTYRAG 3 cut(s) 193, 628, 710
SmoI CTYRAG 3 cut(s) 193, 628, 710
SseBI AGGCCT 3 cut(s) 780, 1897, 1976
SspDI GGCGCC 2 cut(s) 227, 2912
SspI AATATT 1 cut(s) 1379
SspMI CTAG 4 cut(s) 776, 909, 1076, 1241
StuI AGGCCT 3 cut(s) 780, 1897, 1976
StyD4I CCNGG 5 cut(s) 406, 811, 1257, 1426, 2610
StyI CCWWGG 3 cut(s) 1469, 1754, 2759
TaaI ACNGT 9 cut(s) 37, 742, 857, 1160, 1940, 2432, 2658, 2672, 2860
TaiI ACGT 3 cut(s) 111, 273, 338
TaqI TCGA 8 cut(s) 51, 135, 194, 215, 332, 597, 2110, 2862
TatI WGTACW 1 cut(s) 822
TauI GCSGC 5 cut(s) 119, 315, 440, 443, 1403
TfiI GAWTC 7 cut(s) 53, 476, 1236, 1412, 2468, 2626, 2767
Tru1I TTAA 9 cut(s) 591, 690, 711, 1823, 1844, 1859, 1983, 2651, 2903
Tru9I TTAA 9 cut(s) 591, 690, 711, 1823, 1844, 1859, 1983, 2651, 2903
TscAI CASTG 7 cut(s) 1351, 1369, 1885, 2552, 2677, 2703, 2886
TseFI GTSAC 7 cut(s) 109, 266, 815, 1187, 1364, 2672, 2694
TseI GCWGC 9 cut(s) 288, 1016, 1103, 1649, 1652, 1655, 2169, 2635, 2732
Tsp45I GTSAC 7 cut(s) 109, 266, 815, 1187, 1364, 2672, 2694
TspGWI ACGGA 2 cut(s) 488, 1029
TspRI CASTG 7 cut(s) 1351, 1369, 1885, 2552, 2677, 2703, 2886
Vha464I CTTAAG 1 cut(s) 710
VpaK11BI GGWCC 3 cut(s) 1156, 1338, 2563
XbaI TCTAGA 1 cut(s) 908
XceI RCATGY 2 cut(s) 887, 1372
XhoI CTCGAG 1 cut(s) 193
XmiI GTMKAC 2 cut(s) 1465, 1729
XmnI GAANNNNTTC 1 cut(s) 2508
XspI CTAG 4 cut(s) 776, 909, 1076, 1241
ZraI GACGTC 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.