Rmu_sc0000957.1_g000008

Protein of unknown function (DUF1336)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000957.1
OG0002719
Physical Location & Seq
Forward (+)
40066 .. 44972
4907 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1116 bp
atggaatctgattcagatgttgattttgctagtgtacatggaggtgacgtactcaaatctcaattttccaatactttgtgggttaaattgcgagtgttagctcgtgatcttgacactactatagttctttgttttttcgggtttgtcagatgggtttcctcctatggtagtgcttctaatcagaagtacttattccgtcctaaagcaggactacgcattccttgttcagcggtagagaagccaactccaggatcctggtctgaaatctcgccttcagtctttaagctccgcggggagaactatttcaaagacaaacagaagtaccctgctccaaactacagctcatatgtaccaattggtattgatttgtttatctgcccaaggaagagagatcacattgctcagcatcttgagcttccttctgtagaaccacatgacaaagttccttccctccttattgttaatatacagtttcctacatatcctattacaatgttccctagtgaatgtgatggtgaaggcatgagtcttgtattatactttaaagtcggtgaaaattttgacaaagacatctctcctcagtttcaagaattcatcaagagatttgttgaggatgataccgaaatggttaaggggttcacaaaggagtcgtcggttcctttcagggaaaggctaaaaattatggctggatttgttaatccagacgaggtccaactgagttctgctgagaagaagcttttaagtgcttataatgataaaccggtgctttcgcgccctcaacacaatttcttcaggggacctaattattttgagattgacctagacatacacacgttcagctacatctccaggaaagggcttgaatcatcccgagacagattgaagaatggggtatttaatttgggattaacaatccagcaggaagaggggagcaagactgagcacttacaggtgcagaggtgccgggcgaggttttgtagatcggcttaccctccagccattggcgtaggcggtgtcgcaatattatctaaggtgatagtggatccggtatccatagattttcagatcaaggaagaaatggtgacgatgagggaggggaaggaagcaattatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

371

Amino Acids

42.16

Weight (kDa)

7.05

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 86 - 308 1e-46 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 750
AccB1I GGYRCC 1 cut(s) 960
AccB7I CCANNNNNTGG 1 cut(s) 1001
AccII CGCG 2 cut(s) 291, 772
AciI CCGC 4 cut(s) 230, 289, 291, 1011
AclWI GGATC 4 cut(s) 246, 259, 1037, 1050
AcsI RAATTY 2 cut(s) 556, 590
AcuI CTGAAG 2 cut(s) 258, 775
AfaI GTAC 5 cut(s) 36, 51, 188, 323, 351
AfiI CCNNNNNNNGG 4 cut(s) 206, 248, 855, 1001
AflIII ACRYGT 1 cut(s) 831
AgeI ACCGGT 1 cut(s) 760
AgsI TTSAA 4 cut(s) 307, 587, 863, 883
AjnI CCWGG 3 cut(s) 247, 254, 848
AluBI AGCT 6 cut(s) 101, 286, 342, 415, 736, 840
AluI AGCT 6 cut(s) 101, 286, 342, 415, 736, 840
Alw21I GWGCWC 1 cut(s) 945
Alw26I GTCTC 1 cut(s) 867
AlwI GGATC 4 cut(s) 246, 259, 1037, 1050
Ama87I CYCGRG 1 cut(s) 870
ApoI RAATTY 2 cut(s) 556, 590
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
AsiGI ACCGGT 1 cut(s) 760
Asp700I GAANNNNTTC 1 cut(s) 302
AspLEI GCGC 1 cut(s) 774
AspS9I GGNCC 2 cut(s) 709, 797
AsuC2I CCSGG 1 cut(s) 965
AsuHPI GGTGA 5 cut(s) 56, 527, 563, 1045, 1093
AvaI CYCGRG 1 cut(s) 870
AvaII GGWCC 2 cut(s) 709, 797
BaeI ACNNNNGTAYC 2 cut(s) 305, 338
BamHI GGATCC 2 cut(s) 251, 1042
BanI GGYRCC 1 cut(s) 960
BauI CACGAG 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 945
BccI CCATC 2 cut(s) 144, 506
BciT130I CCWGG 3 cut(s) 249, 256, 850
BciVI GTATCC 1 cut(s) 1060
BcnI CCSGG 1 cut(s) 965
BcoDI GTCTC 1 cut(s) 867
BfaI CTAG 3 cut(s) 30, 501, 821
BfmI CTRYAG 3 cut(s) 120, 337, 423
BfuI GTATCC 1 cut(s) 1060
BlpI GCTNAGC 1 cut(s) 402
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 4 cut(s) 249, 256, 850, 965
Bme18I GGWCC 2 cut(s) 709, 797
BmeT110I CYCGRG 1 cut(s) 870
BmgT120I GGNCC 2 cut(s) 709, 797
BmiI GGNNCC 5 cut(s) 253, 657, 798, 962, 1044
BmrFI CCNGG 4 cut(s) 249, 256, 850, 965
BmsI GCATC 1 cut(s) 415
BpmI CTGGAG 3 cut(s) 231, 832, 978
Bpu1102I GCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 965
BsaJI CCNNGG 2 cut(s) 289, 380
BsaWI WCCGGW 2 cut(s) 760, 1045
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 248, 855, 1001
Bse118I RCCGGY 1 cut(s) 760
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 3 cut(s) 249, 256, 850
BseDI CCNNGG 2 cut(s) 289, 380
BseGI GGATG 2 cut(s) 619, 866
BseLI CCNNNNNNNGG 4 cut(s) 206, 248, 855, 1001
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 5 cut(s) 416, 593, 707, 717, 930
BseRI GAGGAG 1 cut(s) 567
BsgI GTGCAG 1 cut(s) 974
Bsh1236I CGCG 2 cut(s) 291, 772
BshNI GGYRCC 1 cut(s) 960
BshTI ACCGGT 1 cut(s) 760
BsiHKAI GWGCWC 1 cut(s) 945
BsiHKCI CYCGRG 1 cut(s) 870
BsiSI CCGG 3 cut(s) 761, 964, 1046
BslFI GGGAC 1 cut(s) 810
BslI CCNNNNNNNGG 4 cut(s) 206, 248, 855, 1001
BsmAI GTCTC 1 cut(s) 867
BsmFI GGGAC 1 cut(s) 810
BsmI GAATGC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 870
Bsp1286I GDGCHC 1 cut(s) 945
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 6 cut(s) 106, 251, 391, 980, 1042, 1065
Bsp1720I GCTNAGC 1 cut(s) 402
BspACI CCGC 4 cut(s) 230, 289, 291, 1011
BspCNI CTCAG 5 cut(s) 415, 592, 708, 718, 931
BspFNI CGCG 2 cut(s) 291, 772
BspLI GGNNCC 5 cut(s) 253, 657, 798, 962, 1044
BspPI GGATC 4 cut(s) 246, 259, 1037, 1050
BspT107I GGYRCC 1 cut(s) 960
BsrDI GCAATG 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 760
BsrGI TGTACA 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 760
BssECI CCNNGG 2 cut(s) 289, 380
BssMI GATC 6 cut(s) 106, 251, 391, 980, 1042, 1065
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 380
Bst2BI CACGAG 1 cut(s) 102
Bst2UI CCWGG 3 cut(s) 249, 256, 850
Bst4CI ACNGT 1 cut(s) 471
Bst6I CTCTTC 2 cut(s) 380, 918
BstAUI TGTACA 1 cut(s) 34
BstDEI CTNAG 6 cut(s) 402, 579, 716, 726, 939, 1029
BstDSI CCRYGG 1 cut(s) 289
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 619, 866
BstFNI CGCG 2 cut(s) 291, 772
BstHHI GCGC 1 cut(s) 774
BstKTI GATC 6 cut(s) 109, 254, 394, 983, 1045, 1068
BstMAI GTCTC 1 cut(s) 867
BstMBI GATC 6 cut(s) 106, 251, 391, 980, 1042, 1065
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstNI CCWGG 3 cut(s) 249, 256, 850
BstSCI CCNGG 4 cut(s) 247, 254, 848, 963
BstSFI CTRYAG 3 cut(s) 120, 337, 423
BstUI CGCG 2 cut(s) 291, 772
BstX2I RGATCY 2 cut(s) 251, 1042
BstXI CCANNNNNNTGG 1 cut(s) 255
BstYI RGATCY 2 cut(s) 251, 1042
BsuI GTATCC 1 cut(s) 1060
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 2 cut(s) 619, 866
CfoI GCGC 1 cut(s) 774
Cfr10I RCCGGY 1 cut(s) 760
Cfr13I GGNCC 2 cut(s) 709, 797
Cfr42I CCGCGG 1 cut(s) 292
Csp6I GTAC 5 cut(s) 35, 50, 187, 322, 350
CspAI ACCGGT 1 cut(s) 760
CviAII CATG 3 cut(s) 38, 434, 523
CviQI GTAC 5 cut(s) 35, 50, 187, 322, 350
DdeI CTNAG 6 cut(s) 402, 579, 716, 726, 939, 1029
DpnI GATC 6 cut(s) 108, 253, 393, 982, 1044, 1067
DpnII GATC 6 cut(s) 106, 251, 391, 980, 1042, 1065
DraI TTTAAA 1 cut(s) 544
Eam1104I CTCTTC 2 cut(s) 380, 918
EarI CTCTTC 2 cut(s) 380, 918
Eco130I CCWWGG 1 cut(s) 380
Eco47I GGWCC 2 cut(s) 709, 797
Eco57I CTGAAG 2 cut(s) 258, 775
Eco88I CYCGRG 1 cut(s) 870
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 797
EcoRI GAATTC 1 cut(s) 590
EcoRII CCWGG 3 cut(s) 247, 254, 848
EcoT14I CCWWGG 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 3 cut(s) 41, 437, 526
FaqI GGGAC 1 cut(s) 810
FatI CATG 3 cut(s) 37, 433, 522
FauI CCCGC 1 cut(s) 284
FauNDI CATATG 1 cut(s) 346
FokI GGATG 2 cut(s) 626, 853
FspBI CTAG 3 cut(s) 30, 501, 821
GlaI GCGC 1 cut(s) 773
GsuI CTGGAG 3 cut(s) 231, 832, 978
HapII CCGG 3 cut(s) 761, 964, 1046
HhaI GCGC 1 cut(s) 774
Hin1II CATG 3 cut(s) 41, 437, 526
Hin6I GCGC 1 cut(s) 772
HinP1I GCGC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 5 cut(s) 5, 11, 526, 647, 863
HpaII CCGG 3 cut(s) 761, 964, 1046
HphI GGTGA 5 cut(s) 56, 527, 563, 1045, 1093
Hpy166II GTNNAC 2 cut(s) 35, 639
Hpy188I TCNGA 6 cut(s) 10, 16, 149, 183, 262, 1065
Hpy188III TCNNGA 7 cut(s) 104, 110, 410, 587, 598, 701, 870
Hpy8I GTNNAC 2 cut(s) 35, 639
Hpy99I CGWCG 1 cut(s) 655
HpyAV CCTTC 5 cut(s) 282, 429, 456, 512, 1093
HpyCH4III ACNGT 1 cut(s) 471
HpyCH4IV ACGT 2 cut(s) 48, 833
HpyCH4V TGCA 1 cut(s) 955
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 6 cut(s) 402, 579, 716, 726, 939, 1029
HpySE526I ACGT 2 cut(s) 48, 833
Hsp92II CATG 3 cut(s) 41, 437, 526
HspAI GCGC 1 cut(s) 772
KspI CCGCGG 1 cut(s) 292
Kzo9I GATC 6 cut(s) 106, 251, 391, 980, 1042, 1065
LmnI GCTCC 3 cut(s) 291, 334, 930
LweI GCATC 1 cut(s) 415
MaeI CTAG 3 cut(s) 30, 501, 821
MaeII ACGT 2 cut(s) 48, 833
MaeIII GTNAC 2 cut(s) 44, 1081
MalI GATC 6 cut(s) 108, 253, 393, 982, 1044, 1067
MboI GATC 6 cut(s) 106, 251, 391, 980, 1042, 1065
MboII GAAGA 6 cut(s) 397, 742, 781, 895, 935, 1085
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 2 cut(s) 251, 1042
MhlI GDGCHC 1 cut(s) 945
MlyI GAGTC 2 cut(s) 535, 656
MmeI TCCRAC 1 cut(s) 736
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 9 cut(s) 84, 282, 462, 543, 630, 696, 740, 897, 908
MslI CAYNNNNRTG 1 cut(s) 42
MspA1I CMGCKG 2 cut(s) 230, 291
MspI CCGG 3 cut(s) 761, 964, 1046
MspR9I CCNGG 4 cut(s) 249, 256, 850, 965
MunI CAATTG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 3 cut(s) 249, 256, 850
MvnI CGCG 2 cut(s) 291, 772
MwoI GCNNNNNNNGC 1 cut(s) 412
NciI CCSGG 1 cut(s) 965
NdeI CATATG 1 cut(s) 346
NdeII GATC 6 cut(s) 106, 251, 391, 980, 1042, 1065
NlaIII CATG 3 cut(s) 41, 437, 526
NlaIV GGNNCC 5 cut(s) 253, 657, 798, 962, 1044
NmuCI GTSAC 2 cut(s) 44, 1081
PctI GAATGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 3 cut(s) 5, 11, 863
PflFI GACNNNGTC 1 cut(s) 707
PflMI CCANNNNNTGG 1 cut(s) 1001
PfoI TCCNGGA 2 cut(s) 247, 848
PinAI ACCGGT 1 cut(s) 760
PleI GAGTC 2 cut(s) 534, 655
PpsI GAGTC 2 cut(s) 534, 655
PpuMI RGGWCCY 1 cut(s) 797
PsiI TTATAA 1 cut(s) 750
Psp5II RGGWCCY 1 cut(s) 797
Psp6I CCWGG 3 cut(s) 247, 254, 848
PspGI CCWGG 3 cut(s) 247, 254, 848
PspN4I GGNNCC 5 cut(s) 253, 657, 798, 962, 1044
PspPI GGNCC 2 cut(s) 709, 797
PspPPI RGGWCCY 1 cut(s) 797
PsuI RGATCY 2 cut(s) 251, 1042
PsyI GACNNNGTC 1 cut(s) 707
RsaI GTAC 5 cut(s) 36, 51, 188, 323, 351
RsaNI GTAC 5 cut(s) 35, 50, 187, 322, 350
RseI CAYNNNNRTG 1 cut(s) 42
SacII CCGCGG 1 cut(s) 292
SaqAI TTAA 9 cut(s) 84, 282, 462, 543, 630, 696, 740, 897, 908
Sau3AI GATC 6 cut(s) 106, 251, 391, 980, 1042, 1065
Sau96I GGNCC 2 cut(s) 709, 797
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 2 cut(s) 535, 656
ScrFI CCNGG 4 cut(s) 249, 256, 850, 965
SduI GDGCHC 1 cut(s) 945
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 3 cut(s) 120, 337, 423
Sfr303I CCGCGG 1 cut(s) 292
SgrBI CCGCGG 1 cut(s) 292
SinI GGWCC 2 cut(s) 709, 797
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
SsiI CCGC 4 cut(s) 230, 289, 291, 1011
SspI AATATT 1 cut(s) 1023
SspMI CTAG 3 cut(s) 30, 501, 821
StyD4I CCNGG 4 cut(s) 247, 254, 848, 963
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 1 cut(s) 471
TaiI ACGT 2 cut(s) 51, 836
TatI WGTACW 2 cut(s) 34, 186
TfiI GAWTC 3 cut(s) 5, 11, 863
Tru1I TTAA 9 cut(s) 84, 282, 462, 543, 630, 696, 740, 897, 908
Tru9I TTAA 9 cut(s) 84, 282, 462, 543, 630, 696, 740, 897, 908
TseFI GTSAC 2 cut(s) 44, 1081
Tsp45I GTSAC 2 cut(s) 44, 1081
TspDTI ATGAA 1 cut(s) 583
TspGWI ACGGA 1 cut(s) 185
Tth111I GACNNNGTC 1 cut(s) 707
Van91I CCANNNNNTGG 1 cut(s) 1001
VpaK11BI GGWCC 2 cut(s) 709, 797
XagI CCTNNNNNAGG 1 cut(s) 204
XapI RAATTY 2 cut(s) 556, 590
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 3 cut(s) 30, 501, 821
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.