Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001032.1

Orthogroup ID

OG0002948

Physical Location & Seq

Genomic Coordinates Reverse (-)

14199 .. 18045

Gene Structure 3847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001032.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atgatcatggagagaagaaggagatggttgctgttgttggcactacttacttgcctctttgcttcttctgctgggagagaatggaagttcaagcacaaggttcataaccatagccccatctacaatcatacgcttgccacaatattggttcgctatgcctctacggtgtatttgtcagatttgacagagctgttttcttggacatgcgacagatgtgatggcttgattaaggattttcaaatgatagagataattgtggacgtccagcattgcttacaggcatttgttggggtggcaacagatccaaatgctattataattgcatttaaagggactcagggaaacagtatacagaattggatcgaagacttattttggaaacaacttgatatagattaccctggcatgcctgatgcaatggtgcaccatggtttttataatgcttaccacaacacaaccatacgacctggaattctaaatgctgttgcaagagccaaagagttttatggagatattggcatcatagtgacagggcattcaatgggaggggcaatggcttcattttgtgctcttgatttaagggttaatcaaaaggagaataatgttcaagttatgacatttggacaacctcgaatcggtaatgcaatttttgctacttactatagcgaaattctgccacagactatacgagtaacaaatggaaatgatgttgtgcctcatatgcctccatactacacttattttccgcagaagacataccaccacttcccaacggaggtatggctttataacattggattgcgaagtcttgtttatcaggttgagaaaatatgtgatgcctctggtgaggacccaacctgcagcaggtcagtgattggggacagcatttcagaccatttagtttattatggtgtcaaattaatggatgagacatggagaccgtgcaaaattgtgacgggtcctggtttactggatcatggaagatcagatctggaaggaaactttgttctgtccagagatgttgcaactcctgttctcaaattgaaaatacaatcagctgctgggggaaagcctctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

359

Amino Acids

40.54

Weight (kDa)

6.69

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18630 AT5G18630 AT5G18630 AT5G18640 AT5G18640 AT5G18640 AT5G18640 AT5G18640
fragaria_vesca	FvH4_1g25590 FvH4_1g25590 FvH4_4g17380 FvH4_4g17380 FvH4_4g17380
malus_domestica	MD13G1172600.v1.1 MD16G1174000.v1.1
prunus_persica	Prupe.1G140800_v2.0.a1
pyrus_communis	pycom13g14820 pycom16g14570
rosa_chinensis	RchiOBHm_Chr2g0123761 RchiOBHm_Chr4g0421311
rosa_laevigata	RLG00000007698 RLG00000018774
rosa_multiflora	Rmu_sc0001032.1_g000004 Rmu_sc0004892.1_g000011
rosa_roxburghii	Rroxscaffold_2G00120370 Rroxscaffold_5G00363540
rosa_rugosa	Rorug02G0247600 Rorug04G0169100
rosa_samantha	Rh2AG306700 Rh2BG315200 Rh2CG293100 Rh2DG330400 Rh4AG230700 Rh4BG233700 Rh4CG244900 Rh4DG229400
rosa_wichuraiana	Rw2G024610 Rw4G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	317, 438, 789
AatII	GACGTC	1 cut(s)	264
Acc36I	ACCTGC	2 cut(s)	855, 866
AccI	GTMKAC	1 cut(s)	349
AciI	CCGC	1 cut(s)	746
AclWI	GGATC	3 cut(s)	296, 368, 981
AcsI	RAATTY	2 cut(s)	471, 669
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	635, 775, 864
AgsI	TTSAA	5 cut(s)	91, 239, 540, 608, 1045
AjnI	CCWGG	3 cut(s)	400, 466, 961
AloI	GAACNNNNNNTCC	2 cut(s)	990, 1022
AluBI	AGCT	2 cut(s)	190, 1058
AluI	AGCT	2 cut(s)	190, 1058
Alw21I	GWGCWC	2 cut(s)	426, 571
Alw26I	GTCTC	2 cut(s)	923, 931
Alw44I	GTGCAC	1 cut(s)	422
AlwI	GGATC	3 cut(s)	296, 368, 981
AlwNI	CAGNNNCTG	1 cut(s)	1061
ApaLI	GTGCAC	1 cut(s)	422
ApeKI	GCWGC	2 cut(s)	861, 1058
ApoI	RAATTY	2 cut(s)	471, 669
AseI	ATTAAT	1 cut(s)	920
AspS9I	GGNCC	2 cut(s)	850, 959
AsuHPI	GGTGA	1 cut(s)	857
AvaII	GGWCC	2 cut(s)	850, 959
BaeGI	GKGCMC	1 cut(s)	426
BbsI	GAAGAC	2 cut(s)	372, 758
Bbv12I	GWGCWC	2 cut(s)	426, 571
BbvI	GCAGC	2 cut(s)	873, 1045
BccI	CCATC	3 cut(s)	18, 125, 212
BciT130I	CCWGG	3 cut(s)	402, 468, 963
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	923, 931
BfmI	CTRYAG	3 cut(s)	661, 859, 1076
BfuAI	ACCTGC	2 cut(s)	855, 866
BglII	AGATCT	1 cut(s)	988
BisI	GCNGC	2 cut(s)	862, 1059
BlsI	GCNGC	2 cut(s)	863, 1060
Bme1390I	CCNGG	3 cut(s)	402, 468, 963
Bme18I	GGWCC	2 cut(s)	850, 959
BmgT120I	GGNCC	2 cut(s)	850, 959
BmiI	GGNNCC	2 cut(s)	852, 960
BmrFI	CCNGG	3 cut(s)	402, 468, 963
BmsI	GCATC	3 cut(s)	403, 528, 826
BpiI	GAAGAC	2 cut(s)	372, 758
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	931
BsaJI	CCNNGG	2 cut(s)	400, 427
Bsc4I	CCNNNNNNNGG	3 cut(s)	635, 775, 864
Bse1I	ACTGG	1 cut(s)	975
Bse3DI	GCAATG	3 cut(s)	268, 423, 558
BseBI	CCWGG	3 cut(s)	402, 468, 963
BseDI	CCNNGG	2 cut(s)	400, 427
BseGI	GGATG	1 cut(s)	931
BseLI	CCNNNNNNNGG	3 cut(s)	635, 775, 864
BseMI	GCAATG	3 cut(s)	268, 423, 558
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	1 cut(s)	975
BseSI	GKGCMC	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	873, 1045
BseYI	CCCAGC	2 cut(s)	71, 1061
BsiHKAI	GWGCWC	2 cut(s)	426, 571
BslFI	GGGAC	2 cut(s)	346, 893
BslI	CCNNNNNNNGG	3 cut(s)	635, 775, 864
BsmAI	GTCTC	2 cut(s)	923, 931
BsmFI	GGGAC	2 cut(s)	346, 893
BsmI	GAATGC	1 cut(s)	535
Bso31I	GGTCTC	1 cut(s)	931
Bsp1286I	GDGCHC	2 cut(s)	426, 571
Bsp143I	GATC	6 cut(s)	3, 301, 360, 973, 983, 988
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	1 cut(s)	746
BspCNI	CTCAG	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	852, 960
BspMAI	CTGCAG	1 cut(s)	863
BspMI	ACCTGC	2 cut(s)	855, 866
BspPI	GGATC	3 cut(s)	296, 368, 981
BspTNI	GGTCTC	1 cut(s)	931
BsrDI	GCAATG	3 cut(s)	268, 423, 558
BsrI	ACTGG	1 cut(s)	975
BssECI	CCNNGG	2 cut(s)	400, 427
BssMI	GATC	6 cut(s)	3, 301, 360, 973, 983, 988
BssNAI	GTATAC	1 cut(s)	350
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	427
Bst1107I	GTATAC	1 cut(s)	350
Bst2UI	CCWGG	3 cut(s)	402, 468, 963
Bst4CI	ACNGT	3 cut(s)	166, 347, 942
BstACI	GRCGYC	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstC8I	GCNNGC	2 cut(s)	135, 407
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	427
BstENI	CCTNNNNNAGG	1 cut(s)	862
BstF5I	GGATG	1 cut(s)	931
BstKTI	GATC	6 cut(s)	6, 304, 363, 976, 986, 991
BstMAI	GTCTC	2 cut(s)	923, 931
BstMBI	GATC	6 cut(s)	3, 301, 360, 973, 983, 988
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 650, 721
BstNI	CCWGG	3 cut(s)	402, 468, 963
BstNSI	RCATGY	2 cut(s)	207, 409
BstSCI	CCNGG	3 cut(s)	400, 466, 961
BstSFI	CTRYAG	3 cut(s)	661, 859, 1076
BstSLI	GKGCMC	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	873, 1045
BstV2I	GAAGAC	2 cut(s)	372, 758
BstX2I	RGATCY	2 cut(s)	301, 988
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	2 cut(s)	301, 988
BstZ17I	GTATAC	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	931
BtsIMutI	CAGTG	1 cut(s)	876
BveI	ACCTGC	2 cut(s)	855, 866
Cac8I	GCNNGC	2 cut(s)	135, 407
CaiI	CAGNNNCTG	1 cut(s)	1061
Cfr13I	GGNCC	2 cut(s)	850, 959
CviAII	CATG	6 cut(s)	7, 204, 406, 428, 933, 977
CviJI	RGCY	8 cut(s)	114, 190, 222, 494, 557, 784, 1058, 1072
CviKI_1	RGCY	8 cut(s)	114, 190, 222, 494, 557, 784, 1058, 1072
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	6 cut(s)	5, 303, 362, 975, 985, 990
DpnII	GATC	6 cut(s)	3, 301, 360, 973, 983, 988
DraI	TTTAAA	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	931
Eco47I	GGWCC	2 cut(s)	850, 959
EcoNI	CCTNNNNNAGG	1 cut(s)	862
EcoO109I	RGGNCCY	2 cut(s)	850, 959
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	3 cut(s)	400, 466, 961
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	6 cut(s)	10, 207, 409, 431, 936, 980
FaqI	GGGAC	2 cut(s)	346, 893
FatI	CATG	6 cut(s)	6, 203, 405, 427, 932, 976
FauNDI	CATATG	1 cut(s)	720
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	862, 1059
FokI	GGATG	1 cut(s)	938
Fsp4HI	GCNGC	2 cut(s)	862, 1059
GluI	GCNGC	2 cut(s)	862, 1059
GsaI	CCCAGC	2 cut(s)	75, 1065
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	6 cut(s)	10, 207, 409, 431, 936, 980
HinfI	GANTC	2 cut(s)	334, 633
HphI	GGTGA	1 cut(s)	857
Hpy166II	GTNNAC	4 cut(s)	259, 350, 424, 968
Hpy188I	TCNGA	3 cut(s)	178, 892, 988
Hpy188III	TCNNGA	3 cut(s)	572, 992, 1014
Hpy8I	GTNNAC	4 cut(s)	259, 350, 424, 968
HpyAV	CCTTC	2 cut(s)	12, 989
HpyCH4III	ACNGT	3 cut(s)	166, 347, 942
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	8 cut(s)	323, 416, 424, 488, 644, 861, 945, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 650, 721
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	6 cut(s)	10, 207, 409, 431, 936, 980
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	6 cut(s)	3, 301, 360, 973, 983, 988
Lsp1109I	GCAGC	2 cut(s)	873, 1045
LweI	GCATC	3 cut(s)	403, 528, 826
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	3 cut(s)	526, 691, 952
MalI	GATC	6 cut(s)	5, 303, 362, 975, 985, 990
MboI	GATC	6 cut(s)	3, 301, 360, 973, 983, 988
MboII	GAAGA	5 cut(s)	27, 57, 377, 763, 993
MflI	RGATCY	2 cut(s)	301, 988
MhlI	GDGCHC	2 cut(s)	426, 571
MluCI	AATT	9 cut(s)	252, 318, 355, 471, 645, 669, 917, 948, 1040
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	9 cut(s)	65, 169, 539, 639, 726, 735, 769, 841, 850
MseI	TTAA	5 cut(s)	228, 327, 578, 585, 920
MslI	CAYNNNNRTG	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	1058
MspR9I	CCNGG	3 cut(s)	402, 468, 963
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	3 cut(s)	402, 468, 963
MwoI	GCNNNNNNNGC	3 cut(s)	68, 650, 721
NcoI	CCATGG	1 cut(s)	427
NdeI	CATATG	1 cut(s)	720
NdeII	GATC	6 cut(s)	3, 301, 360, 973, 983, 988
NlaIII	CATG	6 cut(s)	10, 207, 409, 431, 936, 980
NlaIV	GGNNCC	2 cut(s)	852, 960
NmuCI	GTSAC	2 cut(s)	526, 952
NspI	RCATGY	2 cut(s)	207, 409
PaeI	GCATGC	1 cut(s)	409
PctI	GAATGC	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	633
PkrI	GCNGC	2 cut(s)	863, 1060
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PpuMI	RGGWCCY	2 cut(s)	850, 959
PshBI	ATTAAT	1 cut(s)	920
PsiI	TTATAA	3 cut(s)	317, 438, 789
Psp5II	RGGWCCY	2 cut(s)	850, 959
Psp6I	CCWGG	3 cut(s)	400, 466, 961
PspFI	CCCAGC	2 cut(s)	71, 1061
PspGI	CCWGG	3 cut(s)	400, 466, 961
PspN4I	GGNNCC	2 cut(s)	852, 960
PspPI	GGNCC	2 cut(s)	850, 959
PspPPI	RGGWCCY	2 cut(s)	850, 959
PstI	CTGCAG	1 cut(s)	863
PstNI	CAGNNNCTG	1 cut(s)	1061
PsuI	RGATCY	2 cut(s)	301, 988
PvuII	CAGCTG	1 cut(s)	1058
RseI	CAYNNNNRTG	1 cut(s)	524
SaqAI	TTAA	5 cut(s)	228, 327, 578, 585, 920
SatI	GCNGC	2 cut(s)	862, 1059
Sau3AI	GATC	6 cut(s)	3, 301, 360, 973, 983, 988
Sau96I	GGNCC	2 cut(s)	850, 959
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	3 cut(s)	402, 468, 963
SduI	GDGCHC	2 cut(s)	426, 571
SfaNI	GCATC	3 cut(s)	403, 528, 826
SfcI	CTRYAG	3 cut(s)	661, 859, 1076
SinI	GGWCC	2 cut(s)	850, 959
SmiMI	CAYNNNNRTG	1 cut(s)	524
SphI	GCATGC	1 cut(s)	409
Sse9I	AATT	9 cut(s)	252, 318, 355, 471, 645, 669, 917, 948, 1040
SsiI	CCGC	1 cut(s)	746
SspI	AATATT	1 cut(s)	144
StyD4I	CCNGG	3 cut(s)	400, 466, 961
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	3 cut(s)	166, 347, 942
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	363, 631
TasI	AATT	9 cut(s)	252, 318, 355, 471, 645, 669, 917, 948, 1040
TfiI	GAWTC	1 cut(s)	633
Tru1I	TTAA	5 cut(s)	228, 327, 578, 585, 920
Tru9I	TTAA	5 cut(s)	228, 327, 578, 585, 920
TscAI	CASTG	1 cut(s)	876
TseFI	GTSAC	2 cut(s)	526, 952
TseI	GCWGC	2 cut(s)	861, 1058
Tsp45I	GTSAC	2 cut(s)	526, 952
TspDTI	ATGAA	2 cut(s)	92, 549
TspGWI	ACGGA	1 cut(s)	788
TspRI	CASTG	1 cut(s)	876
VneI	GTGCAC	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	850, 959
VspI	ATTAAT	1 cut(s)	920
XagI	CCTNNNNNAGG	1 cut(s)	862
XapI	RAATTY	2 cut(s)	471, 669
XceI	RCATGY	2 cut(s)	207, 409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	777
XmiI	GTMKAC	1 cut(s)	349
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.