Rh4DG229400

Lipase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002948
Physical Location & Seq
Reverse (-)
43480124 .. 43485060
4937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG229400.1

Sequence Viewer

Length: 780 bp
ATGGAGAGAAGGAGATGGTTGCTATTGCTGGCAGTACTTGCGTGCCTGTTTGGTTGTTCTGCCGGGAGAGAACTGAGATTCAAGCACATGATTCATAGCCATAGCCCTGTCTACAATCACACTCTTGCTACAATATTGGTTCGGTATGCTTCTACGGTGTATTTGTCAGATTTGACAGAGCTGTTTTCTTGGACATGCGACGAATGCAATGGCTTGATCAAGGATTTTCAAATGATAGAGCTGATTGTTGACATCCAGCATTGCTTACAGGCATATGTTGGAGTCGCAACAGATCCTAATGCTATTATAATTGCCTTTAGAGGAACTCAGGAACACAGCATACAGAATTGGGTTGAAGACTTATTTTGGAAGCAACTTGATATAGATTACCCCGGCATGCCTGATGCAATGGTGCACCATGGGTTTTACAGTGCTTACCACAACACCACCATACGCCCTGGAATTCTAAATGCTGTTGCAAGAGCCAAAGAGTTTTATGGAGATATTGGGATCATAGTGACAGGGCATTCAATGGGAGGGGCAATGGCTTCATTTTGTGCTCTTGATTTAAGGGTCAATCAAAAAGAGAACAATGTTCAAGTTATGACATTTGGACAACCTCGTATCGGTAATGCAATCTTTGCTACTTACTATAGCAAACTTGTGCCAAAAAGTATACGAATAACAAATGGAAATGATGTTGTGCCTCATTTGCCTCCATACTATACTCACTTTCCTCAGAAGACATACCACCACTTCCCAAGAGAGGTATTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

259

Amino Acids

29.59

Weight (kDa)

6.91

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 103 - 241 2.1e-37 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AccI GTMKAC 2 cut(s) 111, 676
AclWI GGATC 2 cut(s) 287, 518
AcsI RAATTY 1 cut(s) 462
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 626, 766
AgsI TTSAA 5 cut(s) 82, 230, 356, 531, 599
AjnI CCWGG 1 cut(s) 457
AluBI AGCT 2 cut(s) 181, 241
AluI AGCT 2 cut(s) 181, 241
Alw21I GWGCWC 2 cut(s) 417, 562
Alw44I GTGCAC 1 cut(s) 413
AlwI GGATC 2 cut(s) 287, 518
ApaLI GTGCAC 1 cut(s) 413
ApoI RAATTY 1 cut(s) 462
AsuC2I CCSGG 2 cut(s) 64, 393
BaeGI GKGCMC 1 cut(s) 417
BbsI GAAGAC 2 cut(s) 363, 749
Bbv12I GWGCWC 2 cut(s) 417, 562
BccI CCATC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 459
BclI TGATCA 1 cut(s) 216
BcnI CCSGG 2 cut(s) 64, 393
BfmI CTRYAG 1 cut(s) 652
BmcAI AGTACT 1 cut(s) 36
Bme1390I CCNGG 3 cut(s) 64, 393, 459
BmrFI CCNGG 3 cut(s) 64, 393, 459
BmsI GCATC 1 cut(s) 394
BpiI GAAGAC 2 cut(s) 363, 749
BpuMI CCSGG 2 cut(s) 64, 393
BsaJI CCNNGG 3 cut(s) 391, 418, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 626, 766
Bse3DI GCAATG 4 cut(s) 214, 259, 414, 549
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 3 cut(s) 391, 418, 457
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 626, 766
BseMI GCAATG 4 cut(s) 214, 259, 414, 549
BseMII CTCAG 3 cut(s) 65, 341, 752
BseSI GKGCMC 1 cut(s) 417
BsiHKAI GWGCWC 2 cut(s) 417, 562
BsiSI CCGG 2 cut(s) 63, 393
BslI CCNNNNNNNGG 2 cut(s) 626, 766
BsmI GAATGC 2 cut(s) 209, 526
Bsp1286I GDGCHC 2 cut(s) 417, 562
Bsp143I GATC 3 cut(s) 216, 292, 510
Bsp19I CCATGG 1 cut(s) 418
BspCNI CTCAG 3 cut(s) 66, 340, 751
BspPI GGATC 2 cut(s) 287, 518
BsrDI GCAATG 4 cut(s) 214, 259, 414, 549
BssECI CCNNGG 3 cut(s) 391, 418, 457
BssMI GATC 3 cut(s) 216, 292, 510
BssNAI GTATAC 1 cut(s) 677
BssT1I CCWWGG 1 cut(s) 418
Bst1107I GTATAC 1 cut(s) 677
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 2 cut(s) 157, 431
BstAPI GCANNNNNTGC 2 cut(s) 38, 641
BstC8I GCNNGC 3 cut(s) 30, 43, 398
BstDEI CTNAG 3 cut(s) 74, 327, 738
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 3 cut(s) 219, 295, 513
BstMBI GATC 3 cut(s) 216, 292, 510
BstMWI GCNNNNNNNGC 4 cut(s) 38, 204, 641, 712
BstNI CCWGG 1 cut(s) 459
BstNSI RCATGY 2 cut(s) 198, 400
BstSCI CCNGG 3 cut(s) 62, 391, 457
BstSFI CTRYAG 1 cut(s) 652
BstSLI GKGCMC 1 cut(s) 417
BstV2I GAAGAC 2 cut(s) 363, 749
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BstZ17I GTATAC 1 cut(s) 677
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 3 cut(s) 30, 43, 398
Csp6I GTAC 1 cut(s) 35
CviAII CATG 4 cut(s) 88, 195, 397, 419
CviJI RGCY 7 cut(s) 99, 105, 181, 213, 241, 485, 548
CviKI_1 RGCY 7 cut(s) 99, 105, 181, 213, 241, 485, 548
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 3 cut(s) 74, 327, 738
DpnI GATC 3 cut(s) 218, 294, 512
DpnII GATC 3 cut(s) 216, 292, 510
Eco130I CCWWGG 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 4 cut(s) 91, 198, 400, 422
FatI CATG 4 cut(s) 87, 194, 396, 418
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 216
FblI GTMKAC 2 cut(s) 111, 676
FokI GGATG 1 cut(s) 239
HapII CCGG 2 cut(s) 63, 393
Hin1II CATG 4 cut(s) 91, 198, 400, 422
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 3 cut(s) 78, 91, 282
HpaII CCGG 2 cut(s) 63, 393
Hpy166II GTNNAC 4 cut(s) 112, 250, 415, 677
Hpy188I TCNGA 2 cut(s) 169, 741
Hpy188III TCNNGA 2 cut(s) 329, 563
Hpy8I GTNNAC 4 cut(s) 112, 250, 415, 677
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 3
HpyCH4III ACNGT 2 cut(s) 157, 431
HpyCH4V TGCA 5 cut(s) 207, 407, 415, 479, 635
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 204, 641, 712
HpyF3I CTNAG 3 cut(s) 74, 327, 738
Hsp92II CATG 4 cut(s) 91, 198, 400, 422
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 3 cut(s) 216, 292, 510
LweI GCATC 1 cut(s) 394
MaeIII GTNAC 1 cut(s) 517
MalI GATC 3 cut(s) 218, 294, 512
MboI GATC 3 cut(s) 216, 292, 510
MboII GAAGA 2 cut(s) 368, 754
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 2 cut(s) 417, 562
MluCI AATT 3 cut(s) 309, 346, 462
MlyI GAGTC 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 7 cut(s) 314, 530, 630, 717, 726, 747, 760
MseI TTAA 1 cut(s) 569
MspI CCGG 2 cut(s) 63, 393
MspR9I CCNGG 3 cut(s) 64, 393, 459
Mva1269I GAATGC 2 cut(s) 209, 526
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 4 cut(s) 38, 204, 641, 712
NciI CCSGG 2 cut(s) 64, 393
NcoI CCATGG 1 cut(s) 418
NdeI CATATG 1 cut(s) 274
NdeII GATC 3 cut(s) 216, 292, 510
NlaIII CATG 4 cut(s) 91, 198, 400, 422
NmuCI GTSAC 1 cut(s) 517
NspI RCATGY 2 cut(s) 198, 400
PaeI GCATGC 1 cut(s) 400
PctI GAATGC 2 cut(s) 209, 526
PfeI GAWTC 2 cut(s) 78, 91
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PsiI TTATAA 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PsrI GAACNNNNNNTAC 2 cut(s) 324, 356
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 569
Sau3AI GATC 3 cut(s) 216, 292, 510
ScaI AGTACT 1 cut(s) 36
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 3 cut(s) 64, 393, 459
SduI GDGCHC 2 cut(s) 417, 562
SetI ASST 4 cut(s) 183, 243, 622, 771
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 1 cut(s) 652
SphI GCATGC 1 cut(s) 400
Sse9I AATT 3 cut(s) 309, 346, 462
SspI AATATT 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 62, 391, 457
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 157, 431
TasI AATT 3 cut(s) 309, 346, 462
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 2 cut(s) 78, 91
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 1 cut(s) 517
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 2 cut(s) 83, 540
TspRI CASTG 1 cut(s) 436
VneI GTGCAC 1 cut(s) 413
XapI RAATTY 1 cut(s) 462
XceI RCATGY 2 cut(s) 198, 400
XmiI GTMKAC 2 cut(s) 111, 676
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.