Rorug02G0247600

Lipase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
25802847 .. 25803270
424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0247600.1

Sequence Viewer

Length: 309 bp
ATGGCAGTTTGGGTTAGAATCATTGGTTTTCCTGTTAGATACTTCAAAGATTATCCTATTAGAAAAGCAGGTGCTATTTTAGGTGATGTTGTTAAGATTGATAGATGGACTCTTGGTCCGACTAGAGGTCAATTTGCTCGACTGTGTGTTGAACTTGATGAATTCTTTTTATGGGCTGGGCGTATCATTCTTGTTGGCCTTCGTGACTATCAAGATGACAAAGCTGATTTGATTCTCAAGTACATGCCTGATGAGGCTAGGCTGCTGAAGGCTTATGGAGTGCTTCCAGAGAATACACATCTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.84

Weight (kDa)

9.13

Isoelectric Point (pI)

27.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 2 cut(s) 46, 152
AhdI GACNNNNNGTC 2 cut(s) 114, 126
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 262
ApoI RAATTY 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 95
AvaII GGWCC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 249
BccI CCATC 1 cut(s) 99
BfaI CTAG 2 cut(s) 123, 258
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 116
BmeRI GACNNNNNGTC 2 cut(s) 114, 126
BmgT120I GGNCC 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 249
BseYI CCCAGC 1 cut(s) 176
BshFI GGCC 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 125
BsnI GGCC 1 cut(s) 198
BspANI GGCC 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 198
BveI ACCTGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 244
CviJI RGCY 6 cut(s) 176, 198, 224, 257, 262, 272
CviKI_1 RGCY 6 cut(s) 176, 198, 224, 257, 262, 272
CviQI GTAC 1 cut(s) 241
DriI GACNNNNNGTC 2 cut(s) 114, 126
Eam1105I GACNNNNNGTC 2 cut(s) 114, 126
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 287
EcoRI GAATTC 1 cut(s) 161
FaeI CATG 1 cut(s) 247
FaiI YATR 3 cut(s) 172, 245, 276
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 2 cut(s) 123, 258
GluI GCNGC 1 cut(s) 263
GsaI CCCAGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 198
Hin1II CATG 1 cut(s) 247
HinfI GANTC 3 cut(s) 18, 109, 232
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 3 cut(s) 203, 212, 287
HpyAV CCTTC 2 cut(s) 209, 262
HpyCH4III ACNGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 247
LpnPI CCDG 5 cut(s) 45, 54, 162, 261, 300
Lsp1109I GCAGC 1 cut(s) 249
MaeI CTAG 2 cut(s) 123, 258
MaeIII GTNAC 1 cut(s) 203
MluCI AATT 2 cut(s) 131, 161
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 2 cut(s) 119, 247
MseI TTAA 2 cut(s) 93, 303
NlaIII CATG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 59
PfeI GAWTC 2 cut(s) 18, 232
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 116
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SaqAI TTAA 2 cut(s) 93, 303
SatI GCNGC 1 cut(s) 263
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 103
SetI ASST 4 cut(s) 73, 85, 130, 226
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 131, 161
SspMI CTAG 2 cut(s) 123, 258
TaaI ACNGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 139
TasI AATT 2 cut(s) 131, 161
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 2 cut(s) 18, 232
Tru1I TTAA 2 cut(s) 93, 303
Tru9I TTAA 2 cut(s) 93, 303
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 161
XceI RCATGY 1 cut(s) 247
XspI CTAG 2 cut(s) 123, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.