Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004892.1

Orthogroup ID

OG0002948

Physical Location & Seq

Genomic Coordinates Reverse (-)

30821 .. 34608

Gene Structure 3788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004892.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgtttaacagggaatttttatttcttaatgcagaactgagattcaagcacaagattcatagccatagccccgtctacaatcacactcttgctacaatattggttcggtatgcttctacggtgtatttgtcagatttgacagagctgttttcttggacatgcgacgaatgcaatggcttgatcaaggattttcaaatgatagagctgattgttgacatccagcattgcttacaggcatatgttggagtcgcaacagatcctaatgctattataattgcctttagaggaactcaggaacacagcatacagaattggattgaagacttattttggaagcaacttgatatagattaccccggcatgcctgatgcaatggtgcaccatgggttttacagcgcttaccacaacaccaccatacgccctggaattctaaatgctgttgcaagagccaaagagttttatggagatattgggatcatagtgacagggcattcaatgggaggggcaatggcttcattttgtgctcttgatttaagggtcaatcaaaaagagaacaatgttcaagttatgacatttggacaacctcgtatcggtaatgcaatctttgctacttactatagcaaacttgtgccaaaaagtatacgcataacaaatggaaatgatgttgtgcctcatttgcctccatactatactcactttcctcagaagacataccaccacttcccaagagaggtgtggctttataacattggattgggaagtcttgtttataaggttgagaaaatatgtgatgcctctggcgaggacccaacatgcagcaggtcagtgaaagggaatagcatttcagaccatttagtttattttggtgtcgatttaatggccaagacatggagaccgtgcaaaattgtgatgggtcctggtttactggagcatggaagaacagatctggaaggaaattttgtactgtccagagatcttgcaactcctgttctcaaattgaaaacacggccagacgcccggggaaagcctctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

344

Amino Acids

38.97

Weight (kDa)

7.26

Isoelectric Point (pI)

25.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18630 AT5G18630 AT5G18630 AT5G18640 AT5G18640 AT5G18640 AT5G18640 AT5G18640
fragaria_vesca	FvH4_1g25590 FvH4_1g25590 FvH4_4g17380 FvH4_4g17380 FvH4_4g17380
malus_domestica	MD13G1172600.v1.1 MD16G1174000.v1.1
prunus_persica	Prupe.1G140800_v2.0.a1
pyrus_communis	pycom13g14820 pycom16g14570
rosa_chinensis	RchiOBHm_Chr2g0123761 RchiOBHm_Chr4g0421311
rosa_laevigata	RLG00000007698 RLG00000018774
rosa_multiflora	Rmu_sc0001032.1_g000004 Rmu_sc0004892.1_g000011
rosa_roxburghii	Rroxscaffold_2G00120370 Rroxscaffold_5G00363540
rosa_rugosa	Rorug02G0247600 Rorug04G0169100
rosa_samantha	Rh2AG306700 Rh2BG315200 Rh2CG293100 Rh2DG330400 Rh4AG230700 Rh4BG233700 Rh4CG244900 Rh4DG229400
rosa_wichuraiana	Rw2G024610 Rw4G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	272, 744, 771
Acc36I	ACCTGC	1 cut(s)	810
AccB7I	CCANNNNNTGG	1 cut(s)	888
AccI	GTMKAC	2 cut(s)	75, 640
AclWI	GGATC	2 cut(s)	251, 482
AcoI	YGGCCR	2 cut(s)	879, 1007
AcsI	RAATTY	3 cut(s)	14, 426, 955
AcyI	GRCGYC	1 cut(s)	1014
AfaI	GTAC	1 cut(s)	963
AfeI	AGCGCT	1 cut(s)	397
AfiI	CCNNNNNNNGG	3 cut(s)	590, 730, 888
AgsI	TTSAA	6 cut(s)	46, 194, 320, 495, 563, 1000
AjnI	CCWGG	2 cut(s)	421, 916
AluBI	AGCT	2 cut(s)	145, 205
AluI	AGCT	2 cut(s)	145, 205
Alw21I	GWGCWC	2 cut(s)	381, 526
Alw26I	GTCTC	1 cut(s)	886
Alw44I	GTGCAC	1 cut(s)	377
AlwI	GGATC	2 cut(s)	251, 482
Ama87I	CYCGRG	1 cut(s)	1017
Aor51HI	AGCGCT	1 cut(s)	397
AoxI	GGCC	2 cut(s)	879, 1007
ApaLI	GTGCAC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	816
ApoI	RAATTY	3 cut(s)	14, 426, 955
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	2 cut(s)	805, 914
AsuC2I	CCSGG	3 cut(s)	357, 1018, 1019
AvaI	CYCGRG	1 cut(s)	1017
AvaII	GGWCC	2 cut(s)	805, 914
BaeGI	GKGCMC	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	881
BbsI	GAAGAC	2 cut(s)	327, 713
Bbv12I	GWGCWC	2 cut(s)	381, 526
BbvI	GCAGC	1 cut(s)	828
BccI	CCATC	1 cut(s)	904
BceAI	ACGGC	1 cut(s)	1022
BciT130I	CCWGG	2 cut(s)	423, 918
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	3 cut(s)	357, 1018, 1019
BcoDI	GTCTC	1 cut(s)	886
BfmI	CTRYAG	2 cut(s)	616, 1031
BfoI	RGCGCY	1 cut(s)	399
BfuAI	ACCTGC	1 cut(s)	810
BglII	AGATCT	2 cut(s)	943, 973
BisI	GCNGC	1 cut(s)	817
BlsI	GCNGC	1 cut(s)	818
Bme1390I	CCNGG	5 cut(s)	357, 423, 918, 1018, 1019
Bme18I	GGWCC	2 cut(s)	805, 914
BmeT110I	CYCGRG	1 cut(s)	1017
BmgT120I	GGNCC	2 cut(s)	805, 914
BmiI	GGNNCC	2 cut(s)	807, 915
BmrFI	CCNGG	5 cut(s)	357, 423, 918, 1018, 1019
BmsI	GCATC	2 cut(s)	358, 781
BpiI	GAAGAC	2 cut(s)	327, 713
BpmI	CTGGAG	1 cut(s)	947
BpuMI	CCSGG	3 cut(s)	357, 1018, 1019
BsaHI	GRCGYC	1 cut(s)	1014
BsaI	GGTCTC	1 cut(s)	886
BsaJI	CCNNGG	5 cut(s)	355, 382, 421, 1017, 1018
Bsc4I	CCNNNNNNNGG	3 cut(s)	590, 730, 888
Bse1I	ACTGG	1 cut(s)	930
Bse3DI	GCAATG	4 cut(s)	178, 223, 378, 513
BseBI	CCWGG	2 cut(s)	423, 918
BseDI	CCNNGG	5 cut(s)	355, 382, 421, 1017, 1018
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	3 cut(s)	590, 730, 888
BseMI	GCAATG	4 cut(s)	178, 223, 378, 513
BseMII	CTCAG	3 cut(s)	29, 305, 716
BseNI	ACTGG	1 cut(s)	930
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	828
BshFI	GGCC	2 cut(s)	881, 1009
BsiHKAI	GWGCWC	2 cut(s)	381, 526
BsiHKCI	CYCGRG	1 cut(s)	1017
BsiSI	CCGG	2 cut(s)	357, 1018
BslI	CCNNNNNNNGG	3 cut(s)	590, 730, 888
BsmAI	GTCTC	1 cut(s)	886
BsmI	GAATGC	2 cut(s)	173, 490
BsnI	GGCC	2 cut(s)	881, 1009
Bso31I	GGTCTC	1 cut(s)	886
BsoBI	CYCGRG	1 cut(s)	1017
Bsp1286I	GDGCHC	2 cut(s)	381, 526
Bsp143I	GATC	5 cut(s)	180, 256, 474, 943, 973
Bsp19I	CCATGG	1 cut(s)	382
BspANI	GGCC	2 cut(s)	881, 1009
BspCNI	CTCAG	3 cut(s)	30, 304, 715
BspLI	GGNNCC	2 cut(s)	807, 915
BspMI	ACCTGC	1 cut(s)	810
BspPI	GGATC	2 cut(s)	251, 482
BspTNI	GGTCTC	1 cut(s)	886
BsrDI	GCAATG	4 cut(s)	178, 223, 378, 513
BsrI	ACTGG	1 cut(s)	930
BssECI	CCNNGG	5 cut(s)	355, 382, 421, 1017, 1018
BssMI	GATC	5 cut(s)	180, 256, 474, 943, 973
BssNAI	GTATAC	1 cut(s)	641
BssNI	GRCGYC	1 cut(s)	1014
BssT1I	CCWWGG	1 cut(s)	382
Bst1107I	GTATAC	1 cut(s)	641
Bst2UI	CCWGG	2 cut(s)	423, 918
Bst4CI	ACNGT	3 cut(s)	121, 897, 966
BstACI	GRCGYC	1 cut(s)	1014
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	3 cut(s)	38, 291, 702
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	5 cut(s)	183, 259, 477, 946, 976
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	5 cut(s)	180, 256, 474, 943, 973
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 605, 676
BstNI	CCWGG	2 cut(s)	423, 918
BstNSI	RCATGY	3 cut(s)	162, 364, 816
BstSCI	CCNGG	5 cut(s)	355, 421, 916, 1016, 1017
BstSFI	CTRYAG	2 cut(s)	616, 1031
BstSLI	GKGCMC	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	828
BstV2I	GAAGAC	2 cut(s)	327, 713
BstX2I	RGATCY	3 cut(s)	256, 943, 973
BstYI	RGATCY	3 cut(s)	256, 943, 973
BstZ17I	GTATAC	1 cut(s)	641
BsuRI	GGCC	2 cut(s)	881, 1009
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	831
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	1 cut(s)	362
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	2 cut(s)	805, 914
Cfr9I	CCCGGG	1 cut(s)	1017
CseI	GACGC	1 cut(s)	1022
Csp6I	GTAC	1 cut(s)	962
CviAII	CATG	6 cut(s)	159, 361, 383, 813, 888, 932
CviQI	GTAC	1 cut(s)	962
DdeI	CTNAG	3 cut(s)	38, 291, 702
DpnI	GATC	5 cut(s)	182, 258, 476, 945, 975
DpnII	GATC	5 cut(s)	180, 256, 474, 943, 973
EaeI	YGGCCR	2 cut(s)	879, 1007
Eco130I	CCWWGG	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	886
Eco47I	GGWCC	2 cut(s)	805, 914
Eco47III	AGCGCT	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	1017
EcoO109I	RGGNCCY	2 cut(s)	805, 914
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	2 cut(s)	421, 916
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	6 cut(s)	162, 364, 386, 816, 891, 935
FatI	CATG	6 cut(s)	158, 360, 382, 812, 887, 931
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	2 cut(s)	75, 640
Fnu4HI	GCNGC	1 cut(s)	817
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	817
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	1 cut(s)	817
GsuI	CTGGAG	1 cut(s)	947
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	2 cut(s)	881, 1009
HapII	CCGG	2 cut(s)	357, 1018
HgaI	GACGC	1 cut(s)	1022
HhaI	GCGC	1 cut(s)	398
Hin1I	GRCGYC	1 cut(s)	1014
Hin1II	CATG	6 cut(s)	162, 364, 386, 816, 891, 935
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	42, 55, 246
HpaII	CCGG	2 cut(s)	357, 1018
Hpy166II	GTNNAC	5 cut(s)	76, 214, 379, 641, 923
Hpy188I	TCNGA	3 cut(s)	133, 705, 847
Hpy188III	TCNNGA	4 cut(s)	293, 527, 947, 969
Hpy8I	GTNNAC	5 cut(s)	76, 214, 379, 641, 923
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	944
HpyCH4III	ACNGT	3 cut(s)	121, 897, 966
HpyCH4V	TGCA	9 cut(s)	32, 171, 371, 379, 443, 599, 816, 900, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 605, 676
HpyF3I	CTNAG	3 cut(s)	38, 291, 702
Hsp92I	GRCGYC	1 cut(s)	1014
Hsp92II	CATG	6 cut(s)	162, 364, 386, 816, 891, 935
HspAI	GCGC	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	5 cut(s)	180, 256, 474, 943, 973
LmnI	GCTCC	1 cut(s)	928
Lsp1109I	GCAGC	1 cut(s)	828
LweI	GCATC	2 cut(s)	358, 781
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	5 cut(s)	182, 258, 476, 945, 975
MboI	GATC	5 cut(s)	180, 256, 474, 943, 973
MboII	GAAGA	3 cut(s)	332, 718, 948
MflI	RGATCY	3 cut(s)	256, 943, 973
MhlI	GDGCHC	2 cut(s)	381, 526
MlsI	TGGCCA	1 cut(s)	881
MluCI	AATT	7 cut(s)	14, 273, 310, 426, 903, 955, 995
MluNI	TGGCCA	1 cut(s)	881
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	9 cut(s)	278, 494, 594, 681, 690, 711, 724, 796, 805
Mox20I	TGGCCA	1 cut(s)	881
MscI	TGGCCA	1 cut(s)	881
MseI	TTAA	4 cut(s)	6, 27, 533, 875
Msp20I	TGGCCA	1 cut(s)	881
MspI	CCGG	2 cut(s)	357, 1018
MspR9I	CCNGG	5 cut(s)	357, 423, 918, 1018, 1019
Mva1269I	GAATGC	2 cut(s)	173, 490
MvaI	CCWGG	2 cut(s)	423, 918
MwoI	GCNNNNNNNGC	3 cut(s)	168, 605, 676
NciI	CCSGG	3 cut(s)	357, 1018, 1019
NcoI	CCATGG	1 cut(s)	382
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	5 cut(s)	180, 256, 474, 943, 973
NlaIII	CATG	6 cut(s)	162, 364, 386, 816, 891, 935
NlaIV	GGNNCC	2 cut(s)	807, 915
NmuCI	GTSAC	1 cut(s)	481
NspI	RCATGY	3 cut(s)	162, 364, 816
PaeI	GCATGC	1 cut(s)	364
PctI	GAATGC	2 cut(s)	173, 490
PfeI	GAWTC	2 cut(s)	42, 55
PflMI	CCANNNNNTGG	1 cut(s)	888
PkrI	GCNGC	1 cut(s)	818
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PpuMI	RGGWCCY	2 cut(s)	805, 914
PsiI	TTATAA	3 cut(s)	272, 744, 771
Psp5II	RGGWCCY	2 cut(s)	805, 914
Psp6I	CCWGG	2 cut(s)	421, 916
PspGI	CCWGG	2 cut(s)	421, 916
PspN4I	GGNNCC	2 cut(s)	807, 915
PspPI	GGNCC	2 cut(s)	805, 914
PspPPI	RGGWCCY	2 cut(s)	805, 914
PsrI	GAACNNNNNNTAC	2 cut(s)	288, 320
PsuI	RGATCY	3 cut(s)	256, 943, 973
RsaI	GTAC	1 cut(s)	963
RsaNI	GTAC	1 cut(s)	962
SaqAI	TTAA	4 cut(s)	6, 27, 533, 875
SatI	GCNGC	1 cut(s)	817
Sau3AI	GATC	5 cut(s)	180, 256, 474, 943, 973
Sau96I	GGNCC	2 cut(s)	805, 914
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	5 cut(s)	357, 423, 918, 1018, 1019
SduI	GDGCHC	2 cut(s)	381, 526
SetI	ASST	6 cut(s)	147, 207, 586, 735, 777, 824
SfaNI	GCATC	2 cut(s)	358, 781
SfcI	CTRYAG	2 cut(s)	616, 1031
SinI	GGWCC	2 cut(s)	805, 914
SmaI	CCCGGG	1 cut(s)	1019
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	7 cut(s)	14, 273, 310, 426, 903, 955, 995
SspI	AATATT	1 cut(s)	99
StyD4I	CCNGG	5 cut(s)	355, 421, 916, 1016, 1017
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	3 cut(s)	121, 897, 966
TaqI	TCGA	1 cut(s)	870
TasI	AATT	7 cut(s)	14, 273, 310, 426, 903, 955, 995
TatI	WGTACW	1 cut(s)	961
TfiI	GAWTC	2 cut(s)	42, 55
Tru1I	TTAA	4 cut(s)	6, 27, 533, 875
Tru9I	TTAA	4 cut(s)	6, 27, 533, 875
TscAI	CASTG	1 cut(s)	831
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	816
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	2 cut(s)	47, 504
TspMI	CCCGGG	1 cut(s)	1017
TspRI	CASTG	1 cut(s)	831
Van91I	CCANNNNNTGG	1 cut(s)	888
VneI	GTGCAC	1 cut(s)	377
VpaK11BI	GGWCC	2 cut(s)	805, 914
XapI	RAATTY	3 cut(s)	14, 426, 955
XceI	RCATGY	3 cut(s)	162, 364, 816
XcmI	CCANNNNNNNNNTGG	1 cut(s)	732
XmaI	CCCGGG	1 cut(s)	1017
XmiI	GTMKAC	2 cut(s)	75, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.