Rmu_sc0001035.1_g000019

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001035.1
OG0003011
Physical Location & Seq
Forward (+)
93234 .. 94088
855 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
atggataaaaccaagattaaatatgccgccgtccctctcatcgtcgaccacgacaccgcccgctcgcactctctcaaagcctgcttcaacctcaccaagcctccaagcgccccagcctctccatctcgatctacactggcagccatgacgccacctgcggcctcaactctgccaagctcctgggctgggttacccgtggtgtaccagagcggctggattgggattggtgggaagaacgggtcctggtccgggtccgggttggctcagtcgcagttcttcttgaaagtccgggcccaacccgaccggagattcgtgttcaagttcaacggagagcccgagtgtagcccacaagtttttaaggaagatcgggaagaagagggagagagaggaccttggtggtggtctggaagagagagagagcggaggggggagaagaaaagacccagaaagaaaaagaaaaaagaaaatctgattttaagggtgttttgggaagtatcaaaagaggcttttcgccctttggatacatcttttctttgggattcttctctcaccagcgtcttccttaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

189

Amino Acids

21.43

Weight (kDa)

10.04

Isoelectric Point (pI)

55.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1005 PF06219 62 - 120 8.1e-15 Protein of unknown function (DUF1005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 163
Acc36I ACCTGC 1 cut(s) 163
AccBSI CCGCTC 3 cut(s) 63, 210, 421
AccI GTMKAC 1 cut(s) 45
AciI CCGC 6 cut(s) 27, 57, 61, 158, 210, 421
AcyI GRCGYC 1 cut(s) 149
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 3 cut(s) 186, 249, 255
AgsI TTSAA 4 cut(s) 88, 283, 319, 325
AjnI CCWGG 2 cut(s) 179, 242
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 335
AoxI GGCC 2 cut(s) 159, 291
ApaI GGGCCC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 140
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 6 cut(s) 240, 246, 252, 291, 292, 389
AsuC2I CCSGG 3 cut(s) 250, 256, 290
AsuHPI GGTGA 2 cut(s) 85, 541
AvaI CYCGRG 1 cut(s) 335
AvaII GGWCC 4 cut(s) 240, 246, 252, 389
AxyI CCTNAGG 1 cut(s) 563
BaeGI GKGCMC 1 cut(s) 295
BanII GRGCYC 2 cut(s) 295, 336
BbsI GAAGAC 1 cut(s) 550
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 2 cut(s) 181, 244
BciVI GTATCC 1 cut(s) 514
BcnI CCSGG 3 cut(s) 250, 256, 290
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 163
BfuI GTATCC 1 cut(s) 514
BisI GCNGC 4 cut(s) 27, 141, 159, 211
BlsI GCNGC 4 cut(s) 28, 142, 160, 212
Bme1390I CCNGG 5 cut(s) 181, 244, 250, 256, 290
Bme18I GGWCC 4 cut(s) 240, 246, 252, 389
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 6 cut(s) 240, 246, 252, 291, 292, 389
BmiI GGNNCC 3 cut(s) 241, 253, 293
BmrFI CCNGG 5 cut(s) 181, 244, 250, 256, 290
BpiI GAAGAC 1 cut(s) 550
BpuMI CCSGG 3 cut(s) 250, 256, 290
BsaHI GRCGYC 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 180, 195, 392
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 249, 255
Bse1I ACTGG 1 cut(s) 141
Bse21I CCTNAGG 1 cut(s) 563
BseBI CCWGG 2 cut(s) 181, 244
BseDI CCNNGG 3 cut(s) 180, 195, 392
BseLI CCNNNNNNNGG 3 cut(s) 186, 249, 255
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 1 cut(s) 152
BseYI CCCAGC 2 cut(s) 112, 185
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 2 cut(s) 161, 293
BsiEI CGRYCG 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 4 cut(s) 249, 255, 289, 304
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 3 cut(s) 186, 249, 255
BsmFI GGGAC 1 cut(s) 17
BsnI GGCC 2 cut(s) 161, 293
BsoBI CYCGRG 1 cut(s) 335
Bsp120I GGGCCC 1 cut(s) 291
Bsp1286I GDGCHC 2 cut(s) 295, 336
Bsp143I GATC 2 cut(s) 128, 364
BspACI CCGC 6 cut(s) 27, 57, 61, 158, 210, 421
BspANI GGCC 2 cut(s) 161, 293
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 3 cut(s) 241, 253, 293
BspMI ACCTGC 1 cut(s) 163
BsrBI CCGCTC 3 cut(s) 63, 210, 421
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 3 cut(s) 180, 195, 392
BssMI GATC 2 cut(s) 128, 364
BssNI GRCGYC 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 392
Bst2UI CCWGG 2 cut(s) 181, 244
Bst6I CTCTTC 2 cut(s) 369, 403
BstACI GRCGYC 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 61, 65, 82
BstDEI CTNAG 2 cut(s) 264, 563
BstDSI CCRYGG 1 cut(s) 195
BstEII GGTNACC 1 cut(s) 189
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 131, 367
BstMBI GATC 2 cut(s) 128, 364
BstMCI CGRYCG 1 cut(s) 304
BstNI CCWGG 2 cut(s) 181, 244
BstPI GGTNACC 1 cut(s) 189
BstSCI CCNGG 5 cut(s) 179, 242, 248, 254, 288
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 550
BstXI CCANNNNNNTGG 1 cut(s) 180
Bsu36I CCTNAGG 1 cut(s) 563
BsuI GTATCC 1 cut(s) 514
BsuRI GGCC 2 cut(s) 161, 293
BtgI CCRYGG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 134
BveI ACCTGC 1 cut(s) 163
Cac8I GCNNGC 3 cut(s) 61, 65, 82
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 6 cut(s) 240, 246, 252, 291, 292, 389
CseI GACGC 2 cut(s) 157, 544
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 145
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 2 cut(s) 264, 563
DpnI GATC 2 cut(s) 130, 366
DpnII GATC 2 cut(s) 128, 364
Eam1104I CTCTTC 2 cut(s) 369, 403
EarI CTCTTC 2 cut(s) 369, 403
Eco130I CCWWGG 1 cut(s) 392
Eco24I GRGCYC 2 cut(s) 295, 336
Eco47I GGWCC 4 cut(s) 240, 246, 252, 389
Eco81I CCTNAGG 1 cut(s) 563
Eco88I CYCGRG 1 cut(s) 335
Eco91I GGTNACC 1 cut(s) 189
EcoO109I RGGNCCY 2 cut(s) 240, 389
EcoO65I GGTNACC 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 179, 242
EcoT14I CCWWGG 1 cut(s) 392
EcoT38I GRGCYC 2 cut(s) 295, 336
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 1 cut(s) 148
FaiI YATR 2 cut(s) 24, 146
FaqI GGGAC 1 cut(s) 17
FatI CATG 1 cut(s) 144
FauI CCCGC 1 cut(s) 68
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 4 cut(s) 27, 141, 159, 211
FriOI GRGCYC 2 cut(s) 295, 336
Fsp4HI GCNGC 4 cut(s) 27, 141, 159, 211
GlaI GCGC 1 cut(s) 109
GluI GCNGC 4 cut(s) 27, 141, 159, 211
GsaI CCCAGC 2 cut(s) 116, 189
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 2 cut(s) 161, 293
HapII CCGG 4 cut(s) 249, 255, 289, 304
HgaI GACGC 2 cut(s) 157, 544
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 1 cut(s) 148
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 2 cut(s) 309, 539
HpaII CCGG 4 cut(s) 249, 255, 289, 304
HphI GGTGA 2 cut(s) 85, 541
Hpy166II GTNNAC 2 cut(s) 46, 202
Hpy188I TCNGA 1 cut(s) 471
Hpy188III TCNNGA 4 cut(s) 126, 280, 368, 405
Hpy8I GTNNAC 2 cut(s) 46, 202
Hpy99I CGWCG 1 cut(s) 47
HpyF3I CTNAG 2 cut(s) 264, 563
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 1 cut(s) 148
HspAI GCGC 1 cut(s) 108
Kzo9I GATC 2 cut(s) 128, 364
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 189
MalI GATC 2 cut(s) 130, 366
MbiI CCGCTC 3 cut(s) 63, 210, 421
MboI GATC 2 cut(s) 128, 364
MboII GAAGA 9 cut(s) 244, 268, 374, 383, 386, 420, 445, 534, 550
MhlI GDGCHC 2 cut(s) 295, 336
MnlI CCTC 9 cut(s) 45, 101, 111, 127, 172, 370, 380, 417, 496
MseI TTAA 3 cut(s) 18, 357, 476
MspI CCGG 4 cut(s) 249, 255, 289, 304
MspR9I CCNGG 5 cut(s) 181, 244, 250, 256, 290
MvaI CCWGG 2 cut(s) 181, 244
NciI CCSGG 3 cut(s) 250, 256, 290
NdeII GATC 2 cut(s) 128, 364
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 3 cut(s) 241, 253, 293
PaqCI CACCTGC 1 cut(s) 163
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 333
PfeI GAWTC 2 cut(s) 309, 539
PkrI GCNGC 4 cut(s) 28, 142, 160, 212
PpuMI RGGWCCY 2 cut(s) 240, 389
Psp5II RGGWCCY 2 cut(s) 240, 389
Psp6I CCWGG 2 cut(s) 179, 242
PspEI GGTNACC 1 cut(s) 189
PspFI CCCAGC 2 cut(s) 112, 185
PspGI CCWGG 2 cut(s) 179, 242
PspN4I GGNNCC 3 cut(s) 241, 253, 293
PspOMI GGGCCC 1 cut(s) 291
PspPI GGNCC 6 cut(s) 240, 246, 252, 291, 292, 389
PspPPI RGGWCCY 2 cut(s) 240, 389
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SalI GTCGAC 1 cut(s) 44
SaqAI TTAA 3 cut(s) 18, 357, 476
SatI GCNGC 4 cut(s) 27, 141, 159, 211
Sau3AI GATC 2 cut(s) 128, 364
Sau96I GGNCC 6 cut(s) 240, 246, 252, 291, 292, 389
ScrFI CCNGG 5 cut(s) 181, 244, 250, 256, 290
SduI GDGCHC 2 cut(s) 295, 336
SetI ASST 5 cut(s) 93, 157, 179, 394, 569
SinI GGWCC 4 cut(s) 240, 246, 252, 389
SsiI CCGC 6 cut(s) 27, 57, 61, 158, 210, 421
StyD4I CCNGG 5 cut(s) 179, 242, 248, 254, 288
StyI CCWWGG 1 cut(s) 392
TaqI TCGA 2 cut(s) 45, 127
TauI GCSGC 3 cut(s) 29, 161, 213
TfiI GAWTC 2 cut(s) 309, 539
Tru1I TTAA 3 cut(s) 18, 357, 476
Tru9I TTAA 3 cut(s) 18, 357, 476
TscAI CASTG 1 cut(s) 141
TseI GCWGC 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 4 cut(s) 240, 246, 252, 389
XmiI GTMKAC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.