Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001135.1

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Forward (+)

32369 .. 35291

Gene Structure 2923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atggaaataaacttggggaaattggcgtttgacctcgactttcatccatcggagcaattagtgactacaggtctcatcgatggcgaccttcacttgtaccgatattcatctggttcagtacctgaaagggtgctggaagttcatgcacatagcgaatcttgcagagctgctcggttcgtcaacggtggcactgccattttgacggggtctccagaccacacaattcttgcgaccgatgtggaaactggctccgctatcgctcgccttgaaaatgctcatgaggatgcaatcaatagacttataaacttgaccgcatctaccattgcctctggagatgatggaggctgtattaaggtctgggataccagacagcgatcttgctgcaattcctttcaagctcatgaggactacatctccgatatgaccttttcagctgattccatgaaactcttgggaactagggatgcaatcaatagacttataaacttgaccgcatctaccattgcctctggagatgatggaggctgtattaaggtctgggataccagacagcgatcttgctgcaattcctttcaagctcatgaggactacatctccgatatgaccttttcagctgattccatgaaactcttgggaactagtggggatggaactctgtctgtttgcaatcttcgaagaaataaggtccaagataaatctgagttttccgaagacgagctactgtctgttgttatcatgaagaatggtcagaaagttatttgcagctcacaaactgggaatatattgttgtattcatggggttgtttcaaggattgcagtgatcgttttattgatctctctccaaattctgttgatgctttgttgaagcttgatgaagatagacttatcgctggatctgagaccggacttatcagcctagtaggcatattaccaaacagaatcatccaaccaattgcagagcactcagagtatccggtagagcgtcttgctttttctcatgataagaagttcctgggcagtatagcacatgatcagatgttgaaggtctttatctccctctctcatttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

356

Amino Acids

39.02

Weight (kDa)

5.06

Isoelectric Point (pI)

28.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	2 - 151	4.8e-42	WDR55
Beta-prop_WDR3_1st	PF25173	12 - 151	6e-17	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	12 - 150	2.9e-14	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	12 - 158	5.5e-09	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	12 - 150	6.6e-12	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	12 - 151	2.9e-10	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	14 - 165	2.1e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd	PF25168	21 - 156	1.6e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	44 - 146	9.3e-07	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	81 - 351	3.8e-07	WDR36/Utp21 first beta-propeller
Beta-prop_THOC3	PF25174	148 - 349	6.6e-18	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	154 - 265	1.5e-10	WDR5 beta-propeller domain
WDR55	PF24796	155 - 350	2.7e-64	WDR55
WD40_CDC20-Fz	PF24807	165 - 265	2e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	165 - 261	5.8e-11	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	166 - 271	2.1e-06	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	167 - 267	6e-07	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	168 - 251	4.5e-09	Prp19 WD40 domain
Beta-prop_EML	PF23409	172 - 300	1.2e-06	Echinoderm microtubule-associated protein first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	302, 482, 1069
AciI	CCGC	3 cut(s)	252, 312, 492
AclWI	GGATC	1 cut(s)	901
AcsI	RAATTY	1 cut(s)	844
AfaI	GTAC	2 cut(s)	98, 120
AgsI	TTSAA	6 cut(s)	269, 395, 575, 808, 865, 1042
AhdI	GACNNNNNGTC	1 cut(s)	69
AhlI	ACTAGT	1 cut(s)	638
AjnI	CCWGG	1 cut(s)	1011
AluBI	AGCT	8 cut(s)	167, 398, 434, 578, 614, 718, 765, 868
AluI	AGCT	8 cut(s)	167, 398, 434, 578, 614, 718, 765, 868
Alw21I	GWGCWC	1 cut(s)	963
Alw26I	GTCTC	3 cut(s)	77, 213, 893
AlwI	GGATC	1 cut(s)	901
AlwNI	CAGNNNCTG	1 cut(s)	122
ApeKI	GCWGC	4 cut(s)	167, 381, 561, 762
ApoI	RAATTY	1 cut(s)	844
AspS9I	GGNCC	1 cut(s)	685
AsuII	TTCGAA	1 cut(s)	673
AvaII	GGWCC	1 cut(s)	685
BarI	GAAGNNNNNNTAC	2 cut(s)	702, 734
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	963
BbvI	GCAGC	4 cut(s)	154, 368, 548, 774
BccI	CCATC	5 cut(s)	55, 74, 332, 512, 641
BcgI	CGANNNNNNTGC	4 cut(s)	363, 397, 543, 577
BciT130I	CCWGG	1 cut(s)	1013
BciVI	GTATCC	3 cut(s)	355, 535, 981
BclI	TGATCA	1 cut(s)	1030
BcoDI	GTCTC	3 cut(s)	77, 213, 893
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	3 cut(s)	459, 639, 917
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	3 cut(s)	355, 535, 981
BglI	GCCNNNNNGGC	1 cut(s)	921
BisI	GCNGC	4 cut(s)	168, 382, 562, 763
BlsI	GCNGC	4 cut(s)	169, 383, 563, 764
Bme1390I	CCNGG	1 cut(s)	1013
Bme18I	GGWCC	1 cut(s)	685
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	685
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	1013
BmrI	ACTGGG	1 cut(s)	783
BmsI	GCATC	5 cut(s)	274, 323, 454, 503, 844
BmuI	ACTGGG	1 cut(s)	783
BpiI	GAAGAC	1 cut(s)	717
BpmI	CTGGAG	3 cut(s)	195, 351, 531
Bpu14I	TTCGAA	1 cut(s)	673
Bsa29I	ATCGAT	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	106
BsaI	GGTCTC	3 cut(s)	77, 213, 893
BsaJI	CCNNGG	1 cut(s)	1012
BsaWI	WCCGGW	2 cut(s)	902, 973
BsaXI	ACNNNNNCTCC	6 cut(s)	193, 223, 398, 428, 578, 608
Bse1I	ACTGG	2 cut(s)	250, 778
Bse3DI	GCAATG	2 cut(s)	321, 501
Bse8I	GATNNNNATC	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	1013
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	1012
BseGI	GGATG	5 cut(s)	43, 289, 469, 652, 942
BseJI	GATNNNNATC	1 cut(s)	106
BseMI	GCAATG	2 cut(s)	321, 501
BseMII	CTCAG	3 cut(s)	690, 888, 978
BseNI	ACTGG	2 cut(s)	250, 778
BseXI	GCAGC	4 cut(s)	154, 368, 548, 774
Bsh1285I	CGRYCG	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	963
BsiSI	CCGG	2 cut(s)	903, 974
BsmAI	GTCTC	3 cut(s)	77, 213, 893
Bso31I	GGTCTC	3 cut(s)	77, 213, 893
Bsp119I	TTCGAA	1 cut(s)	673
Bsp1286I	GDGCHC	1 cut(s)	963
Bsp143I	GATC	6 cut(s)	374, 554, 820, 832, 893, 1030
BspACI	CCGC	3 cut(s)	252, 312, 492
BspCNI	CTCAG	3 cut(s)	691, 889, 977
BspDI	ATCGAT	1 cut(s)	78
BspHI	TCATGA	5 cut(s)	277, 400, 580, 735, 997
BspLI	GGNNCC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	901
BspT104I	TTCGAA	1 cut(s)	673
BspTNI	GGTCTC	3 cut(s)	77, 213, 893
BsrDI	GCAATG	2 cut(s)	321, 501
BsrI	ACTGG	2 cut(s)	250, 778
BssECI	CCNNGG	1 cut(s)	1012
BssMI	GATC	6 cut(s)	374, 554, 820, 832, 893, 1030
Bst2UI	CCWGG	1 cut(s)	1013
Bst4CI	ACNGT	2 cut(s)	185, 723
BstBI	TTCGAA	1 cut(s)	673
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	3 cut(s)	699, 897, 964
BstF5I	GGATG	5 cut(s)	43, 289, 469, 652, 942
BstKTI	GATC	6 cut(s)	377, 557, 823, 835, 896, 1033
BstMAI	GTCTC	3 cut(s)	77, 213, 893
BstMBI	GATC	6 cut(s)	374, 554, 820, 832, 893, 1030
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 921
BstNI	CCWGG	1 cut(s)	1013
BstSCI	CCNGG	1 cut(s)	1011
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	4 cut(s)	154, 368, 548, 774
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	1 cut(s)	893
BstYI	RGATCY	1 cut(s)	893
Bsu15I	ATCGAT	1 cut(s)	78
BsuI	GTATCC	3 cut(s)	355, 535, 981
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	5 cut(s)	43, 289, 469, 652, 942
BtsI	GCAGTG	2 cut(s)	189, 823
BtsIMutI	CAGTG	2 cut(s)	189, 823
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	5 cut(s)	277, 400, 580, 735, 997
Cfr13I	GGNCC	1 cut(s)	685
ClaI	ATCGAT	1 cut(s)	78
CseI	GACGC	1 cut(s)	971
Csp6I	GTAC	2 cut(s)	97, 119
CviQI	GTAC	2 cut(s)	97, 119
DdeI	CTNAG	3 cut(s)	699, 897, 964
DpnI	GATC	6 cut(s)	376, 556, 822, 834, 895, 1032
DpnII	GATC	6 cut(s)	374, 554, 820, 832, 893, 1030
DriI	GACNNNNNGTC	1 cut(s)	69
Eam1105I	GACNNNNNGTC	1 cut(s)	69
Eco31I	GGTCTC	3 cut(s)	77, 213, 893
Eco47I	GGWCC	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	1011
FalI	AAGNNNNNCTT	2 cut(s)	867, 899
FbaI	TGATCA	1 cut(s)	1030
Fnu4HI	GCNGC	4 cut(s)	168, 382, 562, 763
FokI	GGATG	5 cut(s)	30, 296, 476, 659, 929
Fsp4HI	GCNGC	4 cut(s)	168, 382, 562, 763
FspBI	CTAG	3 cut(s)	459, 639, 917
GluI	GCNGC	4 cut(s)	168, 382, 562, 763
GsuI	CTGGAG	3 cut(s)	195, 351, 531
HapII	CCGG	2 cut(s)	903, 974
HgaI	GACGC	1 cut(s)	971
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	866
HinfI	GANTC	4 cut(s)	155, 437, 617, 939
HpaII	CCGG	2 cut(s)	903, 974
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	9 cut(s)	52, 418, 598, 700, 709, 750, 898, 967, 1035
Hpy188III	TCNNGA	8 cut(s)	212, 278, 330, 401, 510, 581, 736, 998
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	98, 1036
HpyCH4III	ACNGT	2 cut(s)	185, 723
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 921
HpyF3I	CTNAG	3 cut(s)	699, 897, 964
Ksp22I	TGATCA	1 cut(s)	1030
Kzo9I	GATC	6 cut(s)	374, 554, 820, 832, 893, 1030
LmnI	GCTCC	2 cut(s)	52, 254
Lsp1109I	GCAGC	4 cut(s)	154, 368, 548, 774
LweI	GCATC	5 cut(s)	274, 323, 454, 503, 844
MaeI	CTAG	3 cut(s)	459, 639, 917
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	6 cut(s)	376, 556, 822, 834, 895, 1032
MboI	GATC	6 cut(s)	374, 554, 820, 832, 893, 1030
MboII	GAAGA	5 cut(s)	662, 687, 722, 751, 887
MfeI	CAATTG	1 cut(s)	951
MflI	RGATCY	1 cut(s)	893
MhlI	GDGCHC	1 cut(s)	963
MluCI	AATT	7 cut(s)	20, 56, 222, 385, 565, 844, 951
MmeI	TCCRAC	1 cut(s)	970
MnlI	CCTC	9 cut(s)	44, 274, 335, 337, 397, 515, 517, 577, 1067
MseI	TTAA	2 cut(s)	351, 531
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	434, 614
MspI	CCGG	2 cut(s)	903, 974
MspR9I	CCNGG	1 cut(s)	1013
MunI	CAATTG	1 cut(s)	951
MvaI	CCWGG	1 cut(s)	1013
MwoI	GCNNNNNNNGC	2 cut(s)	159, 921
NdeII	GATC	6 cut(s)	374, 554, 820, 832, 893, 1030
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	61
NspV	TTCGAA	1 cut(s)	673
PagI	TCATGA	5 cut(s)	277, 400, 580, 735, 997
PfeI	GAWTC	4 cut(s)	155, 437, 617, 939
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	4 cut(s)	169, 383, 563, 764
PsiI	TTATAA	3 cut(s)	302, 482, 1069
Psp6I	CCWGG	1 cut(s)	1011
PspGI	CCWGG	1 cut(s)	1011
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	685
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	893
PsyI	GACNNNGTC	1 cut(s)	205
PvuII	CAGCTG	2 cut(s)	434, 614
RsaI	GTAC	2 cut(s)	98, 120
RsaNI	GTAC	2 cut(s)	97, 119
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	351, 531
SatI	GCNGC	4 cut(s)	168, 382, 562, 763
Sau3AI	GATC	6 cut(s)	374, 554, 820, 832, 893, 1030
Sau96I	GGNCC	1 cut(s)	685
ScrFI	CCNGG	1 cut(s)	1013
SduI	GDGCHC	1 cut(s)	963
SfaNI	GCATC	5 cut(s)	274, 323, 454, 503, 844
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	673
SinI	GGWCC	1 cut(s)	685
SmiMI	CAYNNNNRTG	1 cut(s)	282
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	7 cut(s)	20, 56, 222, 385, 565, 844, 951
SsiI	CCGC	3 cut(s)	252, 312, 492
SspMI	CTAG	3 cut(s)	459, 639, 917
StyD4I	CCNGG	1 cut(s)	1011
TaaI	ACNGT	2 cut(s)	185, 723
TaqI	TCGA	3 cut(s)	36, 78, 673
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	7 cut(s)	20, 56, 222, 385, 565, 844, 951
TfiI	GAWTC	4 cut(s)	155, 437, 617, 939
Tru1I	TTAA	2 cut(s)	351, 531
Tru9I	TTAA	2 cut(s)	351, 531
TscAI	CASTG	2 cut(s)	196, 823
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	4 cut(s)	167, 381, 561, 762
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	8 cut(s)	32, 96, 131, 458, 638, 752, 783, 888
TspRI	CASTG	2 cut(s)	196, 823
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	685
XapI	RAATTY	1 cut(s)	844
XcmI	CCANNNNNNNNNTGG	2 cut(s)	448, 628
XspI	CTAG	3 cut(s)	459, 639, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.