Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001182.1

Orthogroup ID

OG0002932

Physical Location & Seq

Genomic Coordinates Forward (+)

21269 .. 28286

Gene Structure 7018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4914 bp

atgatgatgatgatgaactccattatagctttttggagggaccaaaggttctatggtggtttgaacccacctggcggattgggattcggggcacgtgttcggacagtggggtcgggttttccgtccagctgtgttgatgattacggccggccgggtcatgcaaacccaaggcccggtaattacagggtttcgctgccgatttgggaagaaatgggatccgccgcggccgcagaagccgccgctgtttcgaagaccaccgcacccaaaaacgagcccaaatcgacctcttcttcgtcttcctcaggaatgacaaaaaagaagggtaaaaaagcttcccaaaaggaagcgcctaccagtggtagaggtaagaagcgaaattcgcctccgagcggtgaagagcaatcccagtcccgcaaaatgcccaagcgtgctgctgcatgtaaagactttaaggagaggtctgttcgtctttctgaaaagtctgatttcatcgcaagcaaggaggaacagattgtgtcagatgaaagtcttgccgtaggcttgacttgtggaaaggatccagatgatgacaagccaaatagaaggctgactcagtttatcttgcataatgaagatggtattgcacagccacttgagatggtgcaacatggtgatctgtttattactggcactctattgcctctggatgaaagttctgacaaggggaaggtcaaggacaggggtatcaaatgtgaaggttttggccgaatagaagcatgggacatctctggttatgatgagggacatccaataatatggcttacaactgatgttgctgattattgttgtgttaaacctgcaagcagctacaagaaacactatgataatttctgtgagaaggcgcgtgcttgcatagaggtctacaaagtactgtcaaaatgcaactctgactgcagtcttgatgaattacttgctggcatcgctcgatcaatgagtggaaacaagttctatgatggcagtgcttctatcaaagaatttatcctatctcaaggtgtgtttatctataatcaattggaaggtttggaggagtcatcaaataggaatgatcgaatattggcacagctgcctgttctcgctgccctcagagaggagtgtataaagcatggatattatgtgccctcaaaaccagcagcttcaagtggtacattaaagattgcttcagatatcggagatggacggaatggttcatccattgttgaagctgaggaagatgaagatgccaagttggctagactatttcaagaagaagaatacttcaagtctatgaaacaaagaaaacgtcaggttgctgcctccacgtccaagaaattctacatcaaaattaatgaagatgaaattgctaatgattatcctttacctgcctattataagactgctattgaagagacagatgaatttatagtggttgacggtgaggatggtgatcttcccacacacatgcttcacaactggtgtctatacaattcagactcgagactgatttcactggagcttcttccaatgaaggcttgtgctgatattgatgttacaatttttggttctggggttatgagtgaagatgatggaagctgtgggtttgatctcgatgctgacagtatccagtcttcttcaagtggttcaatagcaccagtagcacaggatgcttatggcatgccagtttacttgagttccataaaggaatgggtgatagaatggggagcttcaatgatttcagtatcaattcgaacagaactggcctggtacagacttggcaagccatcaaagcagtatgctttgtggtatgaaccaatactgaaaacagcaagggttgggagaagtataatcacaatgcttaaggcagaaagtcgggtagcacggctctcttttgcagatgtcattaaaagattgtcagagttacctaagaatgatggtggttacatttcttctgatccagcatctgttgagagatatgtggttgtacatggacctataatatttcagctgtttacagaatttccagatgtgaagattaaaaattgtccatttgttcatggtcttcgagacaaaatggagaagaggcaccatactaaatgggtagtaaataagaagattttacagaagagtgaatcaaatttgaacccaagggcatcgatgggacctgtggtatccaagaggaagacaatgcaggctacaacaacgaagctgattaacaggatctggggggactactattcaaattactctcctgaagattcaagcccgggagcaacttgtgaaaaaatagaagaggaagaagttgaagaagaggcccaagaggacatagaagaggatgatgcagaagagaattcatcagtaatggaaaaagcccaaaggccttctccaattttaagaaaaattaaaccatgctccagcagcaagaagattttgtggggtgacgagcctctgggagaaacgtgttctggtgaagctctatacaagcatgctgttcttcgtggagaagagatttctgtgggtggggctgttttggtggaagttgatggctcagatgaacttcctgttatctattttgtagaatacatgtatgaatcatcagatggagaaaagatgttccatggcagaatgatgcagcaaggatctgatactgttcttggaaacactgctaatgagagggagctattcttgacaaatgagtgcataaacttggcattaaaggatgtgaaacagacagttgttgtgggcatcaagtcaatgccatgggggcatcaatataggaaggagaatgctgatgctaatagaattgatagagcaagagcagaagagaggaagaagaaaggattgccgactgaatattactgtagaagtttgtattgccctgagcaaggtgctttctttagtctttctcgtcataccattggtctgggctctggtttctgccactcttgcaaattcaatgaagatgagaaggccaaagaagtctttgaagtgaattcatcaaagactggttttatatacagtggagatgagtactcagttcatgattatgtctacgtaagcccctaccagttttctgtgcaaacgattgaaactgaacttttcaaggctggacggaatttggggttgaaaccttttgttgtgtgccaagtgctggggataattactgcaaagggatctaaacaatctgaaatgaagtctacccaggttaaagttcgaagatttttcagaccagaggacatttcggttgagaaagcatactgctctgatattagagaggtctactacagtgaagaactacatattttgcctgtagatagcatagaaggaaaatgtgaagtcagaaagaggagtgatcttccagaatgcaatgctcctgcattgtttcagcatatattcttctgtgagcatctatatgatccttctaacgggtctattaagcagttgccggctaacatcagggtaaagtactcaacagtaggtggtgatcctgagtctagaaagagaaagggcaagtgtaaagaaggagaagatgttccagaagttcagaaacagagggatgattctgaccacaaatgcttagccactttggacatatttgctggatgtggtggcttatcggaggggttgcatcaggcgggtgtctcagtaaccaagtgggcaatcgagtatgaagagccggctggacaggctttccaactcaaccatcctgagtccaaggtgttcatcaataattgcaatgtcatcttgaaggctgtcatggacaaatgtggagatgtggatgattgcatctcaaccagtgatgccaatgatttagctgcatcactagacgataaagtgaaaaatgatctgcccttgccagggcaagtagactttattaatggaggccctccatgccagggtttttctggtatgaatagattcaataccagcacgtggagtaaagtccagtgtgaaatgatattggctttcttatcctttgctgattacttccggccaaaatacttcctcctggagaatgtgaggaactttgtgtcttttaataaaggacagacattccgtctgactctggcttcgcttcttgagatgggttatcaggtgaggtttggtattctggaagctggagcttacggggtttcccagtcccgaaagcgagcatttatttgggcagctgcaccagatgagattcttcccgaatggccagagccaatgcatgtttttggtgtgccagagttgaagattaatttatccagtaattcatattatgctgctgttcggagtactgcaagcggagcccctttccgacccataacggtaagagacacaatcggcgatctcccagctgtaggcaatggagcatccaagggcaatctggagtatgaaagtgaccctgtctcgtggttccagaagaaaatcagagggaacatggctgttttgactgatcacatttcaaaagaaatgaacgagctgaacctcattcggtgcaagaggattcccaagaggcctggtgcagactggaaggaccttccagaggaaaaagtgacgctctctactggtcaagtagtcgacttgataccatggtgcctgcccaacactgccaaacgccacaaccagtggaagggcctgttcggaaggttggactgggaaggcaacttcccaacctccgtcactgatcctcagccaatgggcaaggtgggaatgtgcttccatcctgaccaggacaggattataacagttagagaatgcgctcgttctcaaggctttcccgatagctaccagttttatggcaacactctccacaagcacaggcagattggaaacgctgtccctccaactctggcttatgccctcggccgaaaactcaaggaagcagtcgatagcaagagctcttcttcacaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

1637

Amino Acids

182.51

Weight (kDa)

5.9

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNMT1-RFD	PF12047	189 - 322	5.6e-34	Cytosine specific DNA methyltransferase replication foci domain
DNMT1-RFD	PF12047	488 - 644	8e-34	Cytosine specific DNA methyltransferase replication foci domain
BAH	PF01426	840 - 972	9.5e-20	BAH domain
BAH	PF01426	1014 - 1153	1.7e-24	BAH domain
DNA_methylase	PF00145	1198 - 1625	3.6e-49	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08990 AT4G14140 AT4G14140 AT4G14140 AT5G49160 AT5G49160
fragaria_vesca	FvH4_1g10300 FvH4_1g10300
malus_domestica	MD02G1115100.v1.1 MD15G1231100.v1.1
prunus_persica	Prupe.7G060100_v2.0.a1 Prupe.7G183100_v2.0.a1 Prupe.7G183100_v2.0.a1
pyrus_communis	pycom02g09000 pycom02g09010 pycom15g20590 pycom15g20600
rosa_chinensis	RchiOBHm_Chr2g0097141 RchiOBHm_Chr5g0051581
rosa_laevigata	RLG00000016706 RLG00000034873
rosa_multiflora	Rmu_co8502141.1_g000001 Rmu_sc0001182.1_g000006 Rmu_ssc0000089.1_g000039
rosa_roxburghii	Rroxscaffold_1G00027090 Rroxscaffold_2G00144940
rosa_rugosa	Rorug02G0064600 Rorug05G0279000
rosa_samantha	Rh2AG111700 Rh2BG113700 Rh2CG116000 Rh2DG115000 Rh5AG350100 Rh5BG361900 Rh5CG386800 Rh5DG376800
rosa_wichuraiana	Rw2G008690 Rw5G033130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1407, 4739
AasI	GACNNNNNNGTC	1 cut(s)	109
Acc36I	ACCTGC	2 cut(s)	844, 1405
AccB1I	GGYRCC	2 cut(s)	2097, 4590
AccB7I	CCANNNNNTGG	2 cut(s)	3163, 3945
AccBSI	CCGCTC	1 cut(s)	390
AccI	GTMKAC	6 cut(s)	900, 3063, 3209, 3291, 3879, 4575
AccII	CGCG	2 cut(s)	224, 883
AcoI	YGGCCR	7 cut(s)	145, 149, 225, 742, 4004, 4208, 4861
AcuI	CTGAAG	2 cut(s)	1182, 2286
AcvI	CACGTG	2 cut(s)	95, 3945
AfaI	GTAC	7 cut(s)	909, 1183, 1781, 1998, 3044, 3479, 4291
AflII	CTTAAG	1 cut(s)	1871
AflIII	ACRYGT	3 cut(s)	94, 2471, 2595
AhdI	GACNNNNNGTC	1 cut(s)	4068
AjiI	CACGTC	1 cut(s)	1338
AjnI	CCWGG	8 cut(s)	70, 1775, 3213, 3868, 3906, 4020, 4513, 4725
AloI	GAACNNNNNNTCC	4 cut(s)	32, 64, 3528, 3560
Alw21I	GWGCWC	1 cut(s)	4898
Alw26I	GTCTC	6 cut(s)	1418, 1507, 2073, 3658, 4323, 4408
AlwNI	CAGNNNCTG	2 cut(s)	1976, 2235
Ama87I	CYCGRG	2 cut(s)	1510, 2278
ArsI	GACNNNNNNTTYG	6 cut(s)	274, 306, 1303, 1335, 4066, 4098
AseI	ATTAAT	3 cut(s)	1362, 3888, 4251
Asp700I	GAANNNNTTC	2 cut(s)	3543, 3929
AspLEI	GCGC	3 cut(s)	349, 883, 4757
AspS9I	GGNCC	8 cut(s)	40, 171, 2003, 2174, 2326, 3896, 4531, 4630
AsuC2I	CCSGG	4 cut(s)	153, 174, 2279, 2280
AsuHPI	GGTGA	9 cut(s)	404, 662, 1463, 1472, 1735, 2462, 2492, 3506, 4120
AsuII	TTCGAA	3 cut(s)	248, 1762, 3226
AvaI	CYCGRG	2 cut(s)	1510, 2278
AvaII	GGWCC	4 cut(s)	40, 2003, 2174, 4531
AxyI	CCTNAGG	1 cut(s)	301
BaeGI	GKGCMC	2 cut(s)	94, 1158
BaeI	ACNNNNGTAYC	4 cut(s)	706, 739, 4574, 4607
BalI	TGGCCA	1 cut(s)	4210
BamHI	GGATCC	2 cut(s)	215, 556
BanI	GGYRCC	2 cut(s)	2097, 4590
BanII	GRGCYC	4 cut(s)	276, 2942, 4306, 4898
BarI	GAAGNNNNNNTAC	4 cut(s)	316, 348, 1627, 1659
BauI	CACGAG	1 cut(s)	4405
BbrPI	CACGTG	2 cut(s)	95, 3945
BbsI	GAAGAC	5 cut(s)	257, 288, 1635, 2066, 2201
Bbv12I	GWGCWC	1 cut(s)	4898
BbvCI	CCTCAGC	2 cut(s)	1242, 4686
BceAI	ACGGC	3 cut(s)	160, 518, 1910
BciT130I	CCWGG	8 cut(s)	72, 1777, 3215, 3870, 3908, 4022, 4515, 4727
BciVI	GTATCC	2 cut(s)	1646, 2194
BclI	TGATCA	1 cut(s)	4450
BcnI	CCSGG	4 cut(s)	153, 174, 2279, 2280
BcoDI	GTCTC	6 cut(s)	1418, 1507, 2073, 3658, 4323, 4408
BfaI	CTAG	3 cut(s)	1269, 3507, 3836
BfmI	CTRYAG	5 cut(s)	931, 2872, 3295, 3321, 4353
BfoI	RGCGCY	1 cut(s)	350
BfrI	CTTAAG	1 cut(s)	1871
BfuAI	ACCTGC	2 cut(s)	844, 1405
BfuI	GTATCC	2 cut(s)	1646, 2194
BglI	GCCNNNNNGGC	2 cut(s)	1265, 2776
BlpI	GCTNAGC	1 cut(s)	3589
BmcAI	AGTACT	4 cut(s)	909, 3044, 3479, 4291
Bme18I	GGWCC	4 cut(s)	40, 2003, 2174, 4531
BmeRI	GACNNNNNGTC	1 cut(s)	4068
BmeT110I	CYCGRG	2 cut(s)	1510, 2278
BmgBI	CACGTC	1 cut(s)	1338
BmgT120I	GGNCC	8 cut(s)	40, 171, 2003, 2174, 2326, 3896, 4531, 4630
BmiI	GGNNCC	8 cut(s)	41, 217, 558, 2099, 2175, 4303, 4412, 4592
BmrI	ACTGGG	3 cut(s)	400, 4144, 4660
BmuI	ACTGGG	3 cut(s)	400, 4144, 4660
BoxI	GACNNNNGTC	1 cut(s)	933
BpiI	GAAGAC	5 cut(s)	257, 288, 1635, 2066, 2201
BpmI	CTGGAG	5 cut(s)	1547, 2410, 4043, 4152, 4403
Bpu10I	CCTNAGC	3 cut(s)	1242, 2892, 4686
Bpu1102I	GCTNAGC	1 cut(s)	3589
Bpu14I	TTCGAA	3 cut(s)	248, 1762, 3226
BpuEI	CTTGAG	6 cut(s)	653, 1011, 1723, 4112, 4749, 4856
BpuMI	CCSGG	4 cut(s)	153, 174, 2279, 2280
Bsa29I	ATCGAT	1 cut(s)	2168
BsaAI	YACGTR	3 cut(s)	95, 3067, 3945
BsaBI	GATNNNNATC	1 cut(s)	1461
BsaXI	ACNNNNNCTCC	2 cut(s)	3528, 3558
Bse118I	RCCGGY	3 cut(s)	147, 3457, 3688
Bse21I	CCTNAGG	1 cut(s)	301
Bse3DI	GCAATG	3 cut(s)	3385, 3754, 4366
Bse8I	GATNNNNATC	1 cut(s)	1461
BseBI	CCWGG	8 cut(s)	72, 1777, 3215, 3870, 3908, 4022, 4515, 4727
BseCI	ATCGAT	1 cut(s)	2168
BseJI	GATNNNNATC	1 cut(s)	1461
BseMI	GCAATG	3 cut(s)	3385, 3754, 4366
BseRI	GAGGAG	3 cut(s)	1079, 1142, 3373
BseSI	GKGCMC	2 cut(s)	94, 1158
BseX3I	CGGCCG	4 cut(s)	145, 149, 225, 4861
BseYI	CCCAGC	2 cut(s)	3163, 4348
BsgI	GTGCAG	2 cut(s)	4167, 4539
Bsh1236I	CGCG	2 cut(s)	224, 883
Bsh1285I	CGRYCG	4 cut(s)	148, 152, 228, 4864
BshNI	GGYRCC	2 cut(s)	2097, 4590
BshVI	ATCGAT	1 cut(s)	2168
BsiEI	CGRYCG	4 cut(s)	148, 152, 228, 4864
BsiHKAI	GWGCWC	1 cut(s)	4898
BsiHKCI	CYCGRG	2 cut(s)	1510, 2278
BsiSI	CCGG	7 cut(s)	148, 152, 174, 2279, 3458, 3689, 4003
BslFI	GGGAC	8 cut(s)	53, 394, 773, 795, 2187, 2255, 4138, 4820
BsmAI	GTCTC	6 cut(s)	1418, 1507, 2073, 3658, 4323, 4408
BsmFI	GGGAC	8 cut(s)	53, 394, 773, 795, 2187, 2255, 4138, 4820
BsmI	GAATGC	3 cut(s)	2803, 3380, 4757
BsoBI	CYCGRG	2 cut(s)	1510, 2278
Bsp119I	TTCGAA	3 cut(s)	248, 1762, 3226
Bsp1286I	GDGCHC	6 cut(s)	94, 276, 1158, 2942, 4306, 4898
Bsp1407I	TGTACA	1 cut(s)	1996
Bsp1720I	GCTNAGC	1 cut(s)	3589
Bsp19I	CCATGG	3 cut(s)	2629, 2771, 4586
BspDI	ATCGAT	1 cut(s)	2168
BspFNI	CGCG	2 cut(s)	224, 883
BspHI	TCATGA	1 cut(s)	3052
BspLI	GGNNCC	8 cut(s)	41, 217, 558, 2099, 2175, 4303, 4412, 4592
BspMAI	CTGCAG	1 cut(s)	935
BspMI	ACCTGC	2 cut(s)	844, 1405
BspQI	GCTCTTC	3 cut(s)	390, 3678, 4903
BspT104I	TTCGAA	3 cut(s)	248, 1762, 3226
BspT107I	GGYRCC	2 cut(s)	2097, 4590
BspTI	CTTAAG	1 cut(s)	1871
BsrBI	CCGCTC	1 cut(s)	390
BsrDI	GCAATG	3 cut(s)	3385, 3754, 4366
BsrFI	RCCGGY	3 cut(s)	147, 3457, 3688
BsrGI	TGTACA	1 cut(s)	1996
BssAI	RCCGGY	3 cut(s)	147, 3457, 3688
BssSI	CACGAG	1 cut(s)	4405
BssT1I	CCWWGG	7 cut(s)	167, 2159, 2629, 2771, 3726, 4371, 4586
Bst2BI	CACGAG	1 cut(s)	4405
Bst2UI	CCWGG	8 cut(s)	72, 1777, 3215, 3870, 3908, 4022, 4515, 4727
BstAFI	CTTAAG	1 cut(s)	1871
BstAPI	GCANNNNNTGC	1 cut(s)	1679
BstAUI	TGTACA	1 cut(s)	1996
BstBAI	YACGTR	3 cut(s)	95, 3067, 3945
BstBI	TTCGAA	3 cut(s)	248, 1762, 3226
BstDSI	CCRYGG	4 cut(s)	222, 2629, 2771, 4586
BstENI	CCTNNNNNAGG	3 cut(s)	1124, 2895, 4538
BstFNI	CGCG	2 cut(s)	224, 883
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	3 cut(s)	349, 883, 4757
BstMAI	GTCTC	6 cut(s)	1418, 1507, 2073, 3658, 4323, 4408
BstMCI	CGRYCG	4 cut(s)	148, 152, 228, 4864
BstNI	CCWGG	8 cut(s)	72, 1777, 3215, 3870, 3908, 4022, 4515, 4727
BstNSI	RCATGY	6 cut(s)	441, 1480, 1693, 2501, 2599, 4226
BstPAI	GACNNNNGTC	1 cut(s)	933
BstSFI	CTRYAG	5 cut(s)	931, 2872, 3295, 3321, 4353
BstSLI	GKGCMC	2 cut(s)	94, 1158
BstSNI	TACGTA	1 cut(s)	3067
BstUI	CGCG	2 cut(s)	224, 883
BstV2I	GAAGAC	5 cut(s)	257, 288, 1635, 2066, 2201
BstX2I	RGATCY	5 cut(s)	215, 556, 2232, 2651, 3185
BstXI	CCANNNNNNTGG	3 cut(s)	795, 2935, 4793
BstYI	RGATCY	5 cut(s)	215, 556, 2232, 2651, 3185
BstZI	CGGCCG	4 cut(s)	145, 149, 225, 4861
Bsu15I	ATCGAT	1 cut(s)	2168
Bsu36I	CCTNAGG	1 cut(s)	301
BsuI	GTATCC	2 cut(s)	1646, 2194
BsuTUI	ATCGAT	1 cut(s)	2168
BtgI	CCRYGG	4 cut(s)	222, 2629, 2771, 4586
BtgZI	GCGATG	2 cut(s)	475, 943
BtrI	CACGTC	1 cut(s)	1338
BtsI	GCAGTG	3 cut(s)	1003, 2673, 4602
BveI	ACCTGC	2 cut(s)	844, 1405
CaiI	CAGNNNCTG	2 cut(s)	1976, 2235
CciI	TCATGA	1 cut(s)	3052
CciNI	GCGGCCGC	1 cut(s)	225
CfoI	GCGC	3 cut(s)	349, 883, 4757
Cfr10I	RCCGGY	3 cut(s)	147, 3457, 3688
Cfr13I	GGNCC	8 cut(s)	40, 171, 2003, 2174, 2326, 3896, 4531, 4630
Cfr42I	CCGCGG	1 cut(s)	225
Cfr9I	CCCGGG	1 cut(s)	2278
ClaI	ATCGAT	1 cut(s)	2168
CseI	GACGC	1 cut(s)	4561
Csp6I	GTAC	7 cut(s)	908, 1182, 1780, 1997, 3043, 3478, 4290
CviQI	GTAC	7 cut(s)	908, 1182, 1780, 1997, 3043, 3478, 4290
DrdI	GACNNNNNNGTC	1 cut(s)	109
DriI	GACNNNNNGTC	1 cut(s)	4068
DseDI	GACNNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	7 cut(s)	145, 149, 225, 742, 4004, 4208, 4861
EagI	CGGCCG	4 cut(s)	145, 149, 225, 4861
Eam1105I	GACNNNNNGTC	1 cut(s)	4068
EciI	GGCGGA	2 cut(s)	90, 208
Ecl136II	GAGCTC	1 cut(s)	4896
EclXI	CGGCCG	4 cut(s)	145, 149, 225, 4861
Eco105I	TACGTA	1 cut(s)	3067
Eco130I	CCWWGG	7 cut(s)	167, 2159, 2629, 2771, 3726, 4371, 4586
Eco147I	AGGCCT	2 cut(s)	2392, 4513
Eco24I	GRGCYC	4 cut(s)	276, 2942, 4306, 4898
Eco32I	GATATC	1 cut(s)	1204
Eco47I	GGWCC	4 cut(s)	40, 2003, 2174, 4531
Eco52I	CGGCCG	4 cut(s)	145, 149, 225, 4861
Eco53kI	GAGCTC	1 cut(s)	4896
Eco57I	CTGAAG	2 cut(s)	1182, 2286
Eco72I	CACGTG	2 cut(s)	95, 3945
Eco81I	CCTNAGG	1 cut(s)	301
Eco88I	CYCGRG	2 cut(s)	1510, 2278
EcoICRI	GAGCTC	1 cut(s)	4896
EcoNI	CCTNNNNNAGG	3 cut(s)	1124, 2895, 4538
EcoO109I	RGGNCCY	4 cut(s)	2174, 3896, 4531, 4630
EcoRI	GAATTC	2 cut(s)	2362, 3004
EcoRII	CCWGG	8 cut(s)	70, 1775, 3213, 3868, 3906, 4020, 4513, 4725
EcoRV	GATATC	1 cut(s)	1204
EcoT14I	CCWWGG	7 cut(s)	167, 2159, 2629, 2771, 3726, 4371, 4586
EcoT22I	ATGCAT	1 cut(s)	4224
EcoT38I	GRGCYC	4 cut(s)	276, 2942, 4306, 4898
ErhI	CCWWGG	7 cut(s)	167, 2159, 2629, 2771, 3726, 4371, 4586
FaqI	GGGAC	8 cut(s)	53, 394, 773, 795, 2187, 2255, 4138, 4820
FauI	CCCGC	2 cut(s)	419, 3640
FbaI	TGATCA	1 cut(s)	4450
FblI	GTMKAC	6 cut(s)	900, 3063, 3209, 3291, 3879, 4575
FriOI	GRGCYC	4 cut(s)	276, 2942, 4306, 4898
FseI	GGCCGGCC	1 cut(s)	151
FspBI	CTAG	3 cut(s)	1269, 3507, 3836
GlaI	GCGC	3 cut(s)	348, 882, 4756
GsaI	CCCAGC	2 cut(s)	3167, 4352
GsuI	CTGGAG	5 cut(s)	1547, 2410, 4043, 4152, 4403
HaeII	RGCGCY	1 cut(s)	350
HapII	CCGG	7 cut(s)	148, 152, 174, 2279, 3458, 3689, 4003
HgaI	GACGC	1 cut(s)	4561
HhaI	GCGC	3 cut(s)	349, 883, 4757
Hin6I	GCGC	3 cut(s)	347, 881, 4755
HinP1I	GCGC	3 cut(s)	347, 881, 4755
HincII	GTYRAC	2 cut(s)	1447, 4576
HindII	GTYRAC	2 cut(s)	1447, 4576
HindIII	AAGCTT	1 cut(s)	330
HpaII	CCGG	7 cut(s)	148, 152, 174, 2279, 3458, 3689, 4003
HphI	GGTGA	9 cut(s)	404, 662, 1463, 1472, 1735, 2462, 2492, 3506, 4120
Hpy166II	GTNNAC	9 cut(s)	901, 1447, 1699, 2025, 3064, 3210, 3292, 3880, 4576
Hpy8I	GTNNAC	9 cut(s)	901, 1447, 1699, 2025, 3064, 3210, 3292, 3880, 4576
HpyCH4IV	ACGT	6 cut(s)	94, 1318, 1337, 2471, 3066, 3944
HpySE526I	ACGT	6 cut(s)	94, 1318, 1337, 2471, 3066, 3944
HspAI	GCGC	3 cut(s)	347, 881, 4755
KroI	GCCGGC	3 cut(s)	147, 3457, 3688
KroNI	GCCGGC	3 cut(s)	149, 3459, 3690
Ksp22I	TGATCA	1 cut(s)	4450
KspI	CCGCGG	1 cut(s)	225
LguI	GCTCTTC	3 cut(s)	390, 3678, 4903
LmnI	GCTCC	9 cut(s)	1528, 1736, 2282, 2429, 2689, 3388, 4133, 4301, 4364
MaeI	CTAG	3 cut(s)	1269, 3507, 3836
MaeII	ACGT	6 cut(s)	94, 1318, 1337, 2471, 3066, 3944
MaeIII	GTNAC	8 cut(s)	1564, 1932, 1952, 2450, 3658, 4394, 4549, 4675
MbiI	CCGCTC	1 cut(s)	390
MfeI	CAATTG	1 cut(s)	1049
MflI	RGATCY	5 cut(s)	215, 556, 2232, 2651, 3185
MhlI	GDGCHC	6 cut(s)	94, 276, 1158, 2942, 4306, 4898
MlsI	TGGCCA	1 cut(s)	4210
MluNI	TGGCCA	1 cut(s)	4210
MlyI	GAGTC	6 cut(s)	583, 1076, 1502, 3512, 3731, 4069
MmeI	TCCRAC	4 cut(s)	3730, 4336, 4626, 4865
Mox20I	TGGCCA	1 cut(s)	4210
Mph1103I	ATGCAT	1 cut(s)	4224
MroNI	GCCGGC	3 cut(s)	147, 3457, 3688
MroXI	GAANNNNTTC	2 cut(s)	3543, 3929
MscI	TGGCCA	1 cut(s)	4210
MslI	CAYNNNNRTG	3 cut(s)	1475, 3057, 3423
Msp20I	TGGCCA	1 cut(s)	4210
MspA1I	CMGCKG	7 cut(s)	129, 224, 242, 1102, 2020, 4181, 4352
MspCI	CTTAAG	1 cut(s)	1871
MspI	CCGG	7 cut(s)	148, 152, 174, 2279, 3458, 3689, 4003
MunI	CAATTG	1 cut(s)	1049
Mva1269I	GAATGC	3 cut(s)	2803, 3380, 4757
MvaI	CCWGG	8 cut(s)	72, 1777, 3215, 3870, 3908, 4022, 4515, 4727
MvnI	CGCG	2 cut(s)	224, 883
NaeI	GCCGGC	3 cut(s)	149, 3459, 3690
NciI	CCSGG	4 cut(s)	153, 174, 2279, 2280
NcoI	CCATGG	3 cut(s)	2629, 2771, 4586
NgoMIV	GCCGGC	3 cut(s)	147, 3457, 3688
NlaIV	GGNNCC	8 cut(s)	41, 217, 558, 2099, 2175, 4303, 4412, 4592
NmeAIII	GCCGAG	1 cut(s)	4839
NmuCI	GTSAC	4 cut(s)	2450, 4394, 4549, 4675
NotI	GCGGCCGC	1 cut(s)	225
NsiI	ATGCAT	1 cut(s)	4224
NspI	RCATGY	6 cut(s)	441, 1480, 1693, 2501, 2599, 4226
NspV	TTCGAA	3 cut(s)	248, 1762, 3226
PaeI	GCATGC	2 cut(s)	1693, 2501
PaeR7I	CTCGAG	1 cut(s)	1510
PagI	TCATGA	1 cut(s)	3052
PceI	AGGCCT	2 cut(s)	2392, 4513
PciI	ACATGT	1 cut(s)	2595
PciSI	GCTCTTC	3 cut(s)	390, 3678, 4903
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PctI	GAATGC	3 cut(s)	2803, 3380, 4757
PdiI	GCCGGC	3 cut(s)	149, 3459, 3690
PdmI	GAANNNNTTC	2 cut(s)	3543, 3929
PfeI	GAWTC	8 cut(s)	84, 2144, 2270, 2603, 3572, 3930, 4195, 4501
PflFI	GACNNNGTC	1 cut(s)	4400
PflMI	CCANNNNNTGG	2 cut(s)	3163, 3945
PfoI	TCCNGGA	1 cut(s)	4020
PleI	GAGTC	6 cut(s)	583, 1075, 1502, 3511, 3730, 4069
PmaCI	CACGTG	2 cut(s)	95, 3945
PmlI	CACGTG	2 cut(s)	95, 3945
PpsI	GAGTC	6 cut(s)	583, 1075, 1502, 3511, 3730, 4069
Ppu21I	YACGTR	3 cut(s)	95, 3067, 3945
PpuMI	RGGWCCY	2 cut(s)	2174, 4531
PscI	ACATGT	1 cut(s)	2595
PshAI	GACNNNNGTC	1 cut(s)	933
PshBI	ATTAAT	3 cut(s)	1362, 3888, 4251
PsiI	TTATAA	2 cut(s)	1407, 4739
Psp124BI	GAGCTC	1 cut(s)	4898
Psp5II	RGGWCCY	2 cut(s)	2174, 4531
Psp6I	CCWGG	8 cut(s)	70, 1775, 3213, 3868, 3906, 4020, 4513, 4725
PspCI	CACGTG	2 cut(s)	95, 3945
PspFI	CCCAGC	2 cut(s)	3163, 4348
PspGI	CCWGG	8 cut(s)	70, 1775, 3213, 3868, 3906, 4020, 4513, 4725
PspN4I	GGNNCC	8 cut(s)	41, 217, 558, 2099, 2175, 4303, 4412, 4592
PspPI	GGNCC	8 cut(s)	40, 171, 2003, 2174, 2326, 3896, 4531, 4630
PspPPI	RGGWCCY	2 cut(s)	2174, 4531
PstI	CTGCAG	1 cut(s)	935
PstNI	CAGNNNCTG	2 cut(s)	1976, 2235
PsuI	RGATCY	5 cut(s)	215, 556, 2232, 2651, 3185
PsyI	GACNNNGTC	1 cut(s)	4400
PvuII	CAGCTG	5 cut(s)	129, 1102, 2020, 4181, 4352
RigI	GGCCGGCC	1 cut(s)	151
RsaI	GTAC	7 cut(s)	909, 1183, 1781, 1998, 3044, 3479, 4291
RsaNI	GTAC	7 cut(s)	908, 1182, 1780, 1997, 3043, 3478, 4290
RseI	CAYNNNNRTG	3 cut(s)	1475, 3057, 3423
SacI	GAGCTC	1 cut(s)	4898
SacII	CCGCGG	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	4574
SapI	GCTCTTC	3 cut(s)	390, 3678, 4903
Sau96I	GGNCC	8 cut(s)	40, 171, 2003, 2174, 2326, 3896, 4531, 4630
ScaI	AGTACT	4 cut(s)	909, 3044, 3479, 4291
SchI	GAGTC	6 cut(s)	583, 1076, 1502, 3512, 3731, 4069
SduI	GDGCHC	6 cut(s)	94, 276, 1158, 2942, 4306, 4898
SfcI	CTRYAG	5 cut(s)	931, 2872, 3295, 3321, 4353
Sfr274I	CTCGAG	1 cut(s)	1510
Sfr303I	CCGCGG	1 cut(s)	225
SfuI	TTCGAA	3 cut(s)	248, 1762, 3226
SgrBI	CCGCGG	1 cut(s)	225
SinI	GGWCC	4 cut(s)	40, 2003, 2174, 4531
SlaI	CTCGAG	1 cut(s)	1510
SmaI	CCCGGG	1 cut(s)	2280
SmiMI	CAYNNNNRTG	3 cut(s)	1475, 3057, 3423
SmlI	CTYRAG	8 cut(s)	632, 1026, 1510, 1702, 1871, 4091, 4764, 4871
SmoI	CTYRAG	8 cut(s)	632, 1026, 1510, 1702, 1871, 4091, 4764, 4871
SnaBI	TACGTA	1 cut(s)	3067
SphI	GCATGC	2 cut(s)	1693, 2501
SseBI	AGGCCT	2 cut(s)	2392, 4513
SspI	AATATT	3 cut(s)	1092, 2013, 2867
SspMI	CTAG	3 cut(s)	1269, 3507, 3836
SstI	GAGCTC	1 cut(s)	4898
StuI	AGGCCT	2 cut(s)	2392, 4513
StyI	CCWWGG	7 cut(s)	167, 2159, 2629, 2771, 3726, 4371, 4586
TaiI	ACGT	6 cut(s)	97, 1321, 1340, 2474, 3069, 3947
TatI	WGTACW	5 cut(s)	907, 1996, 3042, 3477, 4289
TauI	GCSGC	5 cut(s)	224, 227, 230, 239, 242
TfiI	GAWTC	8 cut(s)	84, 2144, 2270, 2603, 3572, 3930, 4195, 4501
TseFI	GTSAC	4 cut(s)	2450, 4394, 4549, 4675
Tsp45I	GTSAC	4 cut(s)	2450, 4394, 4549, 4675
TspGWI	ACGGA	5 cut(s)	111, 1231, 3139, 4058, 4663
TspMI	CCCGGG	1 cut(s)	2278
Tth111I	GACNNNGTC	1 cut(s)	4400
Van91I	CCANNNNNTGG	2 cut(s)	3163, 3945
Vha464I	CTTAAG	1 cut(s)	1871
VpaK11BI	GGWCC	4 cut(s)	40, 2003, 2174, 4531
VspI	ATTAAT	3 cut(s)	1362, 3888, 4251
XagI	CCTNNNNNAGG	3 cut(s)	1124, 2895, 4538
XbaI	TCTAGA	1 cut(s)	3506
XceI	RCATGY	6 cut(s)	441, 1480, 1693, 2501, 2599, 4226
XcmI	CCANNNNNNNNNTGG	3 cut(s)	50, 3914, 4378
XhoI	CTCGAG	1 cut(s)	1510
XmaI	CCCGGG	1 cut(s)	2278
XmiI	GTMKAC	6 cut(s)	900, 3063, 3209, 3291, 3879, 4575
XmnI	GAANNNNTTC	2 cut(s)	3543, 3929
XspI	CTAG	3 cut(s)	1269, 3507, 3836
ZrmI	AGTACT	4 cut(s)	909, 3044, 3479, 4291
Zsp2I	ATGCAT	1 cut(s)	4224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.