Rmu_sc0001355.1_g000018

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001355.1
OG0004806
Physical Location & Seq
Reverse (-)
79966 .. 84360
4395 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2538 bp
atgttgaatgtacctgcgaggtctgtgtttgggtccgtcgtgagaaaggtgcctggtgtgttgacaccggcaattgttggcattgaagtttgctggttggccctgtctagtgcctcgttgcgctcggcctctgattgtggtcgcgattgcatgaggtcgcgtttggtgatcttaagtgtcgtagcagggtctgtagttgtggcagtgacagtggaggtcctgccgctagggctgaagaagtcaagagtgcgctatactcgcgagccgtgtcctcgcatgtgcaagtccttcggcgttcaaatcacaattctaccttcacctaccttttccaacgcaaaaatcgtcccctcaaggtcaccattgcaatgcctgagaggaaaatgccgcaccaccacggtcaacttctcagattctgattctcaacaatccagacgacgcccagatcagagcaaaacccagacccaatccgccaccgccgaaccaaaggctggaaacggccccaaaagccggttagaaaagcttccgaaccagaggcctcttgccgcaaacctctgtcgttgcagagactcaccccgcagcactccacaaacgccaccttgcttgagggaagagcgccgccaccagtcgaaacctaggtttcgtagcctctttgaaagtctcgtagctttgatggttagatgcaagtcttttttaagagaaagaactgtgcccaatgctaatctccaatccctcaaagcttcccccaatctcttctctcaccatcttctaaaaactctctcatccattgctgttccatctcataaccacatagcacatcttctactcgaacaaaaatcagccacccaggtcctcgacaccttccaatgggcctccaaactccccggcttcacccactccccgtccacttaccgagccctcatccacaagctatgcacctttcggcgcttcgacattgcccaccaagtgctcgacgaaatgccccactcaattggcctccccccagatgaccacattttcgtcacactcattcacggcctcggccgagctcatttggtgaagcaagtgatcaaggtgcttgacttggttcgcagatataaccagaaaccttctctgaagatattcaattcgattcttgatgttcttgtgaaggaggatatagatatagctagggagttttataggaagaagatggtggcaagtggtgtcaggggtgatgattatacttttggaacaattattaggttcacccctagggctattaagtcgaggggagttgcgccgaatactgtggtttataacacattgctgcatgcactttgcaggaatgggaaagttgggagagccagaagcttgatgaatgagatggaagaccccaatgatgtgacttttaatattttgatatctggttattgtggagaagagaatttggtgcaggcgcttgttatgttagacaagtgctttggtctggggtatgtgcctgatgttgtcacgacaaccaaggtgttggaaattctgtgcaatgatggtcgcgttatggaggctgtcaaggttatagagagagtggacagcaatggagggttggttgatgttgtggcatataataccttgattaagggttactgtcgattagggaaagcaaaacttggtcttcgcattttgaaggagatagagagaaaagggtgtcttccaaatgttgatacctacaatgtcttgatctcgggtttttgtgagtctgggatgttggataaagctcttgatttgtttaatgatatgaaaacagatggcatcaattggaattttgctacatatgatacgttaataagaggcttgtgttcaggaggaagaactgaagatgggttaaaaattttggatttgatgaatgagagcaaagatggttgtaggggtcgaataggtccttttaatagtgtcttgtatggcatgtataaggaaaaacgtttggacgaagcacttgagtttcttgccaatatgggtaaactatttcccagagctgttgataggagctttaggattttaggtttctgtgaggagggtgccactgagaatgcaaagaaggtctatgatcagatgattgtggaaagggcagtcccatgtgttttgatttatgactatctaatccatagattttgccaacaagggtgtgttcgtcaagcctttgagcttatgaatgagatgattgctcattgttactttcctgtttcatcgactttcaatgttctgattaacgggttttgtgagcaaggaaaagttggtagtgcgctaaagctcctcgatgagatgattggtagaggttgtttacctgatatagaaagttatagtcatttggtaggtgctttttgccagaagggggattttcagaaagctttaaaactcgttttgcaaatggtaggaaagggtatcactcctgattatttcacatggaactcgttgcttctttgttcaagtcgagagactgtatggttaaacagcaaaagtatgttttatgtgaacaatcaattacattgtattattgaggcttaa

Protein Analysis

845

Amino Acids

94.5

Weight (kDa)

9.26

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 420 - 471 8.8e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 423 - 456 3.2e-11 PPR repeat
PPR_2 PF13041 427 - 471 2.7e-14 PPR repeat family
PPR PF01535 430 - 456 3.7e-06 PPR repeat
PPR_1 PF12854 458 - 485 3.7e-06 PPR repeat
TPR_24 PF23276 461 - 555 1.2e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 526 - 555 9.5e-06 PPR repeat
PPR_3 PF13812 528 - 574 1.5e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 529 - 576 8.2e-17 PPR repeat family
PPR PF01535 531 - 561 8.7e-07 PPR repeat
PPR_1 PF12854 559 - 592 1.5e-13 PPR repeat
PPR_2 PF13041 563 - 611 5.8e-17 PPR repeat family
PPR PF01535 567 - 596 7.8e-10 PPR repeat
PPR_long PF17177 687 - 820 3.8e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 736 - 766 2e-09 PPR repeat
PPR_2 PF13041 740 - 787 3.1e-13 PPR repeat family
PPR PF01535 741 - 771 9.2e-08 PPR repeat
PPR_3 PF13812 761 - 817 1.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 769 - 802 2.9e-06 PPR repeat
PPR_2 PF13041 773 - 817 2.8e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1296
Acc36I ACCTGC 1 cut(s) 22
AccB1I GGYRCC 2 cut(s) 49, 2051
AccB7I CCANNNNNTGG 1 cut(s) 488
AccII CGCG 4 cut(s) 144, 160, 261, 1530
AciI CCGC 7 cut(s) 224, 385, 468, 474, 543, 574, 616
AclI AACGTT 1 cut(s) 1954
AcoI YGGCCR 1 cut(s) 1039
AcsI RAATTY 4 cut(s) 1423, 1509, 1795, 1863
AcuI CTGAAG 3 cut(s) 254, 1133, 1869
AcyI GRCGYC 1 cut(s) 436
AdeI CACNNNGTG 1 cut(s) 964
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 4 cut(s) 488, 507, 864, 2365
AflII CTTAAG 1 cut(s) 172
AgsI TTSAA 8 cut(s) 7, 86, 299, 653, 1123, 1660, 2230, 2460
AjnI CCWGG 2 cut(s) 52, 843
Alw21I GWGCWC 2 cut(s) 969, 1048
Alw26I GTCTC 3 cut(s) 558, 662, 2462
AlwNI CAGNNNCTG 2 cut(s) 191, 413
Ama87I CYCGRG 1 cut(s) 1717
AoxI GGCC 8 cut(s) 99, 126, 496, 533, 867, 991, 1033, 1039
ApeKI GCWGC 2 cut(s) 576, 1306
ApoI RAATTY 4 cut(s) 1423, 1509, 1795, 1863
ArsI GACNNNNNNTTYG 4 cut(s) 998, 1030, 1442, 1474
Asp700I GAANNNNTTC 2 cut(s) 519, 1118
AspA2I CCTAGG 2 cut(s) 632, 1250
AspLEI GCGC 7 cut(s) 123, 252, 615, 945, 1279, 1438, 2278
AspS9I GGNCC 7 cut(s) 33, 100, 217, 497, 847, 867, 1913
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 9 cut(s) 178, 309, 348, 561, 749, 880, 1066, 1223, 1237
AvaI CYCGRG 1 cut(s) 1717
AvaII GGWCC 4 cut(s) 33, 217, 847, 1913
AvrII CCTAGG 2 cut(s) 632, 1250
BaeGI GKGCMC 1 cut(s) 711
BanI GGYRCC 2 cut(s) 49, 2051
BanII GRGCYC 2 cut(s) 916, 1048
BbsI GAAGAC 3 cut(s) 1374, 1640, 1676
Bbv12I GWGCWC 2 cut(s) 969, 1048
BbvI GCAGC 2 cut(s) 588, 1293
BccI CCATC 9 cut(s) 664, 768, 802, 1183, 1357, 1517, 1775, 1847, 1886
BceAI ACGGC 3 cut(s) 250, 511, 1048
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BciT130I CCWGG 2 cut(s) 54, 845
BclI TGATCA 2 cut(s) 1065, 2080
BcnI CCSGG 1 cut(s) 882
BcoDI GTCTC 3 cut(s) 558, 662, 2462
BfaI CTAG 5 cut(s) 108, 227, 633, 1167, 1251
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 3 cut(s) 616, 946, 1439
BfrI CTTAAG 1 cut(s) 172
BfuAI ACCTGC 1 cut(s) 22
BglI GCCNNNNNGGC 1 cut(s) 229
BisI GCNGC 6 cut(s) 224, 385, 543, 577, 616, 1307
BlnI CCTAGG 2 cut(s) 632, 1250
BlsI GCNGC 6 cut(s) 225, 386, 544, 578, 617, 1308
Bme1390I CCNGG 3 cut(s) 54, 845, 882
Bme18I GGWCC 4 cut(s) 33, 217, 847, 1913
BmeT110I CYCGRG 1 cut(s) 1717
BmgT120I GGNCC 7 cut(s) 33, 100, 217, 497, 847, 867, 1913
BmiI GGNNCC 4 cut(s) 34, 51, 499, 2053
BmrFI CCNGG 3 cut(s) 54, 845, 882
BmsI GCATC 2 cut(s) 668, 1794
BpiI GAAGAC 3 cut(s) 1374, 1640, 1676
BpuEI CTTGAG 3 cut(s) 334, 622, 1991
BpuMI CCSGG 1 cut(s) 882
BsaHI GRCGYC 1 cut(s) 436
BsaJI CCNNGG 7 cut(s) 393, 632, 843, 880, 1036, 1250, 1497
BsaXI ACNNNNNCTCC 2 cut(s) 1566, 1596
Bsc4I CCNNNNNNNGG 4 cut(s) 488, 507, 864, 2365
Bse118I RCCGGY 2 cut(s) 67, 507
Bse1I ACTGG 1 cut(s) 622
Bse3DI GCAATG 7 cut(s) 359, 371, 783, 951, 1301, 1525, 1576
BseBI CCWGG 2 cut(s) 54, 845
BseDI CCNNGG 7 cut(s) 393, 632, 843, 880, 1036, 1250, 1497
BseGI GGATG 3 cut(s) 779, 918, 1743
BseLI CCNNNNNNNGG 4 cut(s) 488, 507, 864, 2365
BseMI GCAATG 7 cut(s) 359, 371, 783, 951, 1301, 1525, 1576
BseMII CTCAG 3 cut(s) 362, 420, 2049
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 2 cut(s) 2060, 2276
BseSI GKGCMC 1 cut(s) 711
BseX3I CGGCCG 1 cut(s) 1039
BseXI GCAGC 2 cut(s) 588, 1293
BsgI GTGCAG 1 cut(s) 1451
Bsh1236I CGCG 4 cut(s) 144, 160, 261, 1530
Bsh1285I CGRYCG 1 cut(s) 1042
BshFI GGCC 8 cut(s) 101, 128, 498, 535, 869, 993, 1035, 1041
BshNI GGYRCC 2 cut(s) 49, 2051
BsiEI CGRYCG 1 cut(s) 1042
BsiHKAI GWGCWC 2 cut(s) 969, 1048
BsiHKCI CYCGRG 1 cut(s) 1717
BsiSI CCGG 3 cut(s) 68, 508, 882
BslFI GGGAC 2 cut(s) 329, 2090
BslI CCNNNNNNNGG 4 cut(s) 488, 507, 864, 2365
BsmAI GTCTC 3 cut(s) 558, 662, 2462
BsmFI GGGAC 2 cut(s) 329, 2090
BsmI GAATGC 1 cut(s) 2068
BsnI GGCC 8 cut(s) 101, 128, 498, 535, 869, 993, 1035, 1041
BsoBI CYCGRG 1 cut(s) 1717
Bsp1286I GDGCHC 4 cut(s) 711, 916, 969, 1048
Bsp143I GATC 5 cut(s) 168, 442, 1065, 1713, 2080
Bsp68I TCGCGA 2 cut(s) 144, 261
BspACI CCGC 7 cut(s) 224, 385, 468, 474, 543, 574, 616
BspANI GGCC 8 cut(s) 101, 128, 498, 535, 869, 993, 1035, 1041
BspCNI CTCAG 3 cut(s) 363, 419, 2050
BspFNI CGCG 4 cut(s) 144, 160, 261, 1530
BspLI GGNNCC 4 cut(s) 34, 51, 499, 2053
BspMI ACCTGC 1 cut(s) 22
BspQI GCTCTTC 1 cut(s) 603
BspT107I GGYRCC 2 cut(s) 49, 2051
BspTI CTTAAG 1 cut(s) 172
BsrDI GCAATG 7 cut(s) 359, 371, 783, 951, 1301, 1525, 1576
BsrFI RCCGGY 2 cut(s) 67, 507
BsrI ACTGG 1 cut(s) 622
BssAI RCCGGY 2 cut(s) 67, 507
BssECI CCNNGG 7 cut(s) 393, 632, 843, 880, 1036, 1250, 1497
BssMI GATC 5 cut(s) 168, 442, 1065, 1713, 2080
BssNI GRCGYC 1 cut(s) 436
BssT1I CCWWGG 3 cut(s) 632, 1250, 1497
Bst2UI CCWGG 2 cut(s) 54, 845
Bst4CI ACNGT 6 cut(s) 211, 397, 706, 1288, 1622, 2473
Bst6I CTCTTC 3 cut(s) 603, 755, 1413
BstACI GRCGYC 1 cut(s) 436
BstAFI CTTAAG 1 cut(s) 172
BstC8I GCNNGC 3 cut(s) 263, 1311, 1434
BstDEI CTNAG 3 cut(s) 371, 406, 2058
BstDSI CCRYGG 1 cut(s) 393
BstEII GGTNACC 1 cut(s) 354
BstF5I GGATG 3 cut(s) 779, 918, 1743
BstFNI CGCG 4 cut(s) 144, 160, 261, 1530
BstH2I RGCGCY 3 cut(s) 616, 946, 1439
BstHHI GCGC 7 cut(s) 123, 252, 615, 945, 1279, 1438, 2278
BstKTI GATC 5 cut(s) 171, 445, 1068, 1716, 2083
BstMAI GTCTC 3 cut(s) 558, 662, 2462
BstMBI GATC 5 cut(s) 168, 442, 1065, 1713, 2080
BstMCI CGRYCG 1 cut(s) 1042
BstMWI GCNNNNNNNGC 3 cut(s) 229, 258, 504
BstNI CCWGG 2 cut(s) 54, 845
BstNSI RCATGY 3 cut(s) 280, 1313, 1942
BstPI GGTNACC 1 cut(s) 354
BstSCI CCNGG 3 cut(s) 52, 843, 880
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 711
BstUI CGCG 4 cut(s) 144, 160, 261, 1530
BstV1I GCAGC 2 cut(s) 588, 1293
BstV2I GAAGAC 3 cut(s) 1374, 1640, 1676
BstXI CCANNNNNNTGG 2 cut(s) 989, 1504
BstZI CGGCCG 1 cut(s) 1039
BsuRI GGCC 8 cut(s) 101, 128, 498, 535, 869, 993, 1035, 1041
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 3 cut(s) 779, 918, 1743
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 3 cut(s) 210, 216, 2055
BtuMI TCGCGA 2 cut(s) 144, 261
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 263, 1311, 1434
CaiI CAGNNNCTG 2 cut(s) 191, 413
CfoI GCGC 7 cut(s) 123, 252, 615, 945, 1279, 1438, 2278
Cfr10I RCCGGY 2 cut(s) 67, 507
Cfr13I GGNCC 7 cut(s) 33, 100, 217, 497, 847, 867, 1913
CseI GACGC 1 cut(s) 444
Csp6I GTAC 1 cut(s) 11
CspCI CAANNNNNGTGG 2 cut(s) 582, 617
CviAII CATG 6 cut(s) 151, 277, 1310, 1939, 2109, 2436
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 3 cut(s) 371, 406, 2058
DpnI GATC 5 cut(s) 170, 444, 1067, 1715, 2082
DpnII GATC 5 cut(s) 168, 442, 1065, 1713, 2080
DraI TTTAAA 1 cut(s) 2385
DraIII CACNNNGTG 1 cut(s) 964
EaeI YGGCCR 1 cut(s) 1039
EagI CGGCCG 1 cut(s) 1039
Eam1104I CTCTTC 3 cut(s) 603, 755, 1413
EarI CTCTTC 3 cut(s) 603, 755, 1413
EciI GGCGGA 1 cut(s) 457
Ecl136II GAGCTC 1 cut(s) 1046
EclXI CGGCCG 1 cut(s) 1039
Eco130I CCWWGG 3 cut(s) 632, 1250, 1497
Eco147I AGGCCT 1 cut(s) 535
Eco24I GRGCYC 2 cut(s) 916, 1048
Eco32I GATATC 1 cut(s) 1401
Eco47I GGWCC 4 cut(s) 33, 217, 847, 1913
Eco52I CGGCCG 1 cut(s) 1039
Eco53kI GAGCTC 1 cut(s) 1046
Eco57I CTGAAG 3 cut(s) 254, 1133, 1869
Eco88I CYCGRG 1 cut(s) 1717
Eco91I GGTNACC 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 1046
EcoO109I RGGNCCY 3 cut(s) 217, 847, 1913
EcoO65I GGTNACC 1 cut(s) 354
EcoRII CCWGG 2 cut(s) 52, 843
EcoRV GATATC 1 cut(s) 1401
EcoT14I CCWWGG 3 cut(s) 632, 1250, 1497
EcoT38I GRGCYC 2 cut(s) 916, 1048
ErhI CCWWGG 3 cut(s) 632, 1250, 1497
FaeI CATG 6 cut(s) 154, 280, 1313, 1942, 2112, 2439
FalI AAGNNNNNCTT 4 cut(s) 1626, 1658, 1668, 1700
FaqI GGGAC 2 cut(s) 329, 2090
FatI CATG 6 cut(s) 150, 276, 1309, 1938, 2108, 2435
FauI CCCGC 1 cut(s) 581
FauNDI CATATG 1 cut(s) 1807
FbaI TGATCA 2 cut(s) 1065, 2080
Fnu4HI GCNGC 6 cut(s) 224, 385, 543, 577, 616, 1307
FokI GGATG 3 cut(s) 766, 905, 1750
FriOI GRGCYC 2 cut(s) 916, 1048
Fsp4HI GCNGC 6 cut(s) 224, 385, 543, 577, 616, 1307
FspBI CTAG 5 cut(s) 108, 227, 633, 1167, 1251
GlaI GCGC 7 cut(s) 122, 251, 614, 944, 1278, 1437, 2277
GluI GCNGC 6 cut(s) 224, 385, 543, 577, 616, 1307
HaeII RGCGCY 3 cut(s) 616, 946, 1439
HaeIII GGCC 8 cut(s) 101, 128, 498, 535, 869, 993, 1035, 1041
HapII CCGG 3 cut(s) 68, 508, 882
HgaI GACGC 1 cut(s) 444
HhaI GCGC 7 cut(s) 123, 252, 615, 945, 1279, 1438, 2278
Hin1I GRCGYC 1 cut(s) 436
Hin1II CATG 6 cut(s) 154, 280, 1313, 1942, 2112, 2439
Hin6I GCGC 7 cut(s) 121, 250, 613, 943, 1277, 1436, 2276
HinP1I GCGC 7 cut(s) 121, 250, 613, 943, 1277, 1436, 2276
HincII GTYRAC 2 cut(s) 63, 400
HindII GTYRAC 2 cut(s) 63, 400
HindIII AAGCTT 4 cut(s) 518, 735, 1348, 2379
HinfI GANTC 5 cut(s) 410, 416, 566, 1129, 1730
HpaII CCGG 3 cut(s) 68, 508, 882
HphI GGTGA 9 cut(s) 178, 309, 348, 561, 749, 880, 1066, 1223, 1237
Hpy166II GTNNAC 8 cut(s) 63, 400, 903, 1245, 1564, 1994, 2315, 2506
Hpy188I TCNGA 9 cut(s) 133, 409, 415, 447, 525, 1113, 2085, 2238, 2376
Hpy8I GTNNAC 8 cut(s) 63, 400, 903, 1245, 1564, 1994, 2315, 2506
Hpy99I CGWCG 3 cut(s) 41, 438, 974
HpyAV CCTTC 8 cut(s) 298, 324, 868, 1116, 1141, 1654, 2065, 2356
HpyCH4III ACNGT 6 cut(s) 211, 397, 706, 1288, 1622, 2473
HpyCH4IV ACGT 2 cut(s) 1814, 1954
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 258, 504
HpyF3I CTNAG 3 cut(s) 371, 406, 2058
HpySE526I ACGT 2 cut(s) 1814, 1954
Hsp92I GRCGYC 1 cut(s) 436
Hsp92II CATG 6 cut(s) 154, 280, 1313, 1942, 2112, 2439
HspAI GCGC 7 cut(s) 121, 250, 613, 943, 1277, 1436, 2276
Ksp22I TGATCA 2 cut(s) 1065, 2080
Kzo9I GATC 5 cut(s) 168, 442, 1065, 1713, 2080
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 2 cut(s) 2019, 2289
Lsp1109I GCAGC 2 cut(s) 588, 1293
LweI GCATC 2 cut(s) 668, 1794
MaeI CTAG 5 cut(s) 108, 227, 633, 1167, 1251
MaeII ACGT 2 cut(s) 1814, 1954
MaeIII GTNAC 7 cut(s) 205, 354, 1018, 1381, 1486, 1616, 2204
MalI GATC 5 cut(s) 170, 444, 1067, 1715, 2082
MboI GATC 5 cut(s) 168, 442, 1065, 1713, 2080
MfeI CAATTG 3 cut(s) 72, 987, 1789
MhlI GDGCHC 4 cut(s) 711, 916, 969, 1048
MlyI GAGTC 2 cut(s) 560, 1739
MmeI TCCRAC 3 cut(s) 354, 1485, 1722
MroXI GAANNNNTTC 2 cut(s) 519, 1118
MslI CAYNNNNRTG 1 cut(s) 364
MspCI CTTAAG 1 cut(s) 172
MspI CCGG 3 cut(s) 68, 508, 882
MspR9I CCNGG 3 cut(s) 54, 845, 882
MunI CAATTG 3 cut(s) 72, 987, 1789
Mva1269I GAATGC 1 cut(s) 2068
MvaI CCWGG 2 cut(s) 54, 845
MvnI CGCG 4 cut(s) 144, 160, 261, 1530
MwoI GCNNNNNNNGC 3 cut(s) 229, 258, 504
NciI CCSGG 1 cut(s) 882
NdeI CATATG 1 cut(s) 1807
NdeII GATC 5 cut(s) 168, 442, 1065, 1713, 2080
NlaIII CATG 6 cut(s) 154, 280, 1313, 1942, 2112, 2439
NlaIV GGNNCC 4 cut(s) 34, 51, 499, 2053
NmeAIII GCCGAG 3 cut(s) 104, 1017, 1067
NmuCI GTSAC 5 cut(s) 205, 354, 1018, 1381, 1486
NruI TCGCGA 2 cut(s) 144, 261
NspI RCATGY 3 cut(s) 280, 1313, 1942
PaeI GCATGC 1 cut(s) 1313
PceI AGGCCT 1 cut(s) 535
PciSI GCTCTTC 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PctI GAATGC 1 cut(s) 2068
PdmI GAANNNNTTC 2 cut(s) 519, 1118
PfeI GAWTC 3 cut(s) 410, 416, 1129
PflMI CCANNNNNTGG 1 cut(s) 488
PkrI GCNGC 6 cut(s) 225, 386, 544, 578, 617, 1308
PleI GAGTC 2 cut(s) 560, 1738
PpsI GAGTC 2 cut(s) 560, 1738
PpuMI RGGWCCY 3 cut(s) 217, 847, 1913
PsiI TTATAA 1 cut(s) 1296
Psp124BI GAGCTC 1 cut(s) 1048
Psp1406I AACGTT 1 cut(s) 1954
Psp5II RGGWCCY 3 cut(s) 217, 847, 1913
Psp6I CCWGG 2 cut(s) 52, 843
PspEI GGTNACC 1 cut(s) 354
PspGI CCWGG 2 cut(s) 52, 843
PspN4I GGNNCC 4 cut(s) 34, 51, 499, 2053
PspPI GGNCC 7 cut(s) 33, 100, 217, 497, 847, 867, 1913
PspPPI RGGWCCY 3 cut(s) 217, 847, 1913
PstNI CAGNNNCTG 2 cut(s) 191, 413
RruI TCGCGA 2 cut(s) 144, 261
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 364
SacI GAGCTC 1 cut(s) 1048
SapI GCTCTTC 1 cut(s) 603
SatI GCNGC 6 cut(s) 224, 385, 543, 577, 616, 1307
Sau3AI GATC 5 cut(s) 168, 442, 1065, 1713, 2080
Sau96I GGNCC 7 cut(s) 33, 100, 217, 497, 847, 867, 1913
SchI GAGTC 2 cut(s) 560, 1739
ScrFI CCNGG 3 cut(s) 54, 845, 882
SduI GDGCHC 4 cut(s) 711, 916, 969, 1048
SfaNI GCATC 2 cut(s) 668, 1794
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 4 cut(s) 33, 217, 847, 1913
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 4 cut(s) 172, 349, 601, 1970
SmoI CTYRAG 4 cut(s) 172, 349, 601, 1970
SphI GCATGC 1 cut(s) 1313
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 7 cut(s) 224, 385, 468, 474, 543, 574, 616
SspI AATATT 1 cut(s) 1393
SspMI CTAG 5 cut(s) 108, 227, 633, 1167, 1251
SstI GAGCTC 1 cut(s) 1048
StuI AGGCCT 1 cut(s) 535
StyD4I CCNGG 3 cut(s) 52, 843, 880
StyI CCWWGG 3 cut(s) 632, 1250, 1497
TaaI ACNGT 6 cut(s) 211, 397, 706, 1288, 1622, 2473
TaiI ACGT 2 cut(s) 1817, 1957
TauI GCSGC 4 cut(s) 226, 387, 545, 618
TfiI GAWTC 3 cut(s) 410, 416, 1129
TscAI CASTG 3 cut(s) 210, 216, 2062
TseFI GTSAC 5 cut(s) 205, 354, 1018, 1381, 1486
TseI GCWGC 2 cut(s) 576, 1306
Tsp45I GTSAC 5 cut(s) 205, 354, 1018, 1381, 1486
TspDTI ATGAA 5 cut(s) 1370, 1787, 1892, 2198, 2208
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 3 cut(s) 210, 216, 2062
Van91I CCANNNNNTGG 1 cut(s) 488
Vha464I CTTAAG 1 cut(s) 172
VpaK11BI GGWCC 4 cut(s) 33, 217, 847, 1913
XapI RAATTY 4 cut(s) 1423, 1509, 1795, 1863
XceI RCATGY 3 cut(s) 280, 1313, 1942
XmaJI CCTAGG 2 cut(s) 632, 1250
XmnI GAANNNNTTC 2 cut(s) 519, 1118
XspI CTAG 5 cut(s) 108, 227, 633, 1167, 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.