Rmu_sc0001590.1_g000018

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001590.1
OG0003777
Physical Location & Seq
Reverse (-)
113595 .. 116562
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 684 bp
atgttgaaatggccagatcgctatgttgcactatttggtgagtattgttatgatccttccaaatggaggccaagcataccatttgtggagcaactgaaggctcttcaagaagttgtggatgaaggaaaggtacgttatattggtgtttccaatgagacttcatacggagtgatggagttcgtacatactgctaaagttgaaggactaccaaagatcatcagtatccaaaacaattacagtctgcttgttagaactcattttgaaattgatcttgttgaagtttgcctcccacaacatcacaacattggcttactagcttattctccacttgctggtggagctctaaccggaaagtacattgatagcaattccgatgctgcaagaaaagggaggttgaatctcttcccaggctacatggaaagatataaaaaatccattgccagggaagcaacaataaagtacatcgaacttgccaaaaagcatgggctgactccagttcaacttgcacttggatttgcaagggatcgcccattcatgaccagttctatcattggcgcaacttctgtcaaccaactgaaagaggacattgatgcttttctgtcaaccgagaggcctttaccagcagaactggcggctgatatcgaagatatttacaagagataccgagatcctacccttttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

227

Amino Acids

25.71

Weight (kDa)

6.97

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 22 - 218 4.1e-33 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 332
AciI CCGC 1 cut(s) 632
AclWI GGATC 3 cut(s) 47, 531, 662
AcoI YGGCCR 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 4 cut(s) 132, 183, 356, 461
AfiI CCNNNNNNNGG 3 cut(s) 66, 332, 441
AgsI TTSAA 7 cut(s) 7, 107, 200, 263, 278, 397, 500
AjnI CCWGG 2 cut(s) 406, 440
AluBI AGCT 2 cut(s) 317, 341
AluI AGCT 2 cut(s) 317, 341
Alw21I GWGCWC 1 cut(s) 343
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 3 cut(s) 47, 531, 662
AoxI GGCC 3 cut(s) 11, 68, 611
ApeKI GCWGC 1 cut(s) 377
Asp700I GAANNNNTTC 1 cut(s) 401
AspLEI GCGC 1 cut(s) 557
AsuHPI GGTGA 1 cut(s) 50
BalI TGGCCA 1 cut(s) 13
BanII GRGCYC 1 cut(s) 343
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 1 cut(s) 364
BccI CCATC 1 cut(s) 166
BciT130I CCWGG 2 cut(s) 408, 442
BciVI GTATCC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 314
BfuI GTATCC 1 cut(s) 233
BisI GCNGC 2 cut(s) 378, 633
BlsI GCNGC 2 cut(s) 379, 634
Bme1390I CCNGG 2 cut(s) 408, 442
BmrFI CCNGG 2 cut(s) 408, 442
BmsI GCATC 2 cut(s) 364, 580
BpmI CTGGAG 1 cut(s) 477
BsaJI CCNNGG 2 cut(s) 406, 441
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 332, 441
Bse1I ACTGG 3 cut(s) 494, 540, 633
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 2 cut(s) 408, 442
BseDI CCNNGG 2 cut(s) 406, 441
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 3 cut(s) 66, 332, 441
BseMI GCAATG 1 cut(s) 435
BseNI ACTGG 3 cut(s) 494, 540, 633
BseXI GCAGC 1 cut(s) 364
BshFI GGCC 3 cut(s) 13, 70, 613
BsiHKAI GWGCWC 1 cut(s) 343
BsiSI CCGG 1 cut(s) 348
BslI CCNNNNNNNGG 3 cut(s) 66, 332, 441
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 3 cut(s) 13, 70, 613
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 6 cut(s) 16, 52, 213, 268, 523, 667
BspACI CCGC 1 cut(s) 632
BspANI GGCC 3 cut(s) 13, 70, 613
BspHI TCATGA 1 cut(s) 534
BspPI GGATC 3 cut(s) 47, 531, 662
BspQI GCTCTTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 435
BsrI ACTGG 3 cut(s) 494, 540, 633
BssECI CCNNGG 2 cut(s) 406, 441
BssMI GATC 6 cut(s) 16, 52, 213, 268, 523, 667
Bst2UI CCWGG 2 cut(s) 408, 442
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 2 cut(s) 108, 407
BstF5I GGATG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 6 cut(s) 19, 55, 216, 271, 526, 670
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 6 cut(s) 16, 52, 213, 268, 523, 667
BstMWI GCNNNNNNNGC 3 cut(s) 338, 446, 629
BstNI CCWGG 2 cut(s) 408, 442
BstSCI CCNGG 2 cut(s) 406, 440
BstV1I GCAGC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 667
BstYI RGATCY 1 cut(s) 667
BsuI GTATCC 1 cut(s) 233
BsuRI GGCC 3 cut(s) 13, 70, 613
BtsCI GGATG 1 cut(s) 124
CciI TCATGA 1 cut(s) 534
CfoI GCGC 1 cut(s) 557
Csp6I GTAC 4 cut(s) 131, 182, 355, 460
CviAII CATG 3 cut(s) 415, 482, 535
CviQI GTAC 4 cut(s) 131, 182, 355, 460
DpnI GATC 6 cut(s) 18, 54, 215, 270, 525, 669
DpnII GATC 6 cut(s) 16, 52, 213, 268, 523, 667
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 2 cut(s) 108, 407
EarI CTCTTC 2 cut(s) 108, 407
Ecl136II GAGCTC 1 cut(s) 341
Eco147I AGGCCT 1 cut(s) 613
Eco24I GRGCYC 1 cut(s) 343
Eco32I GATATC 1 cut(s) 640
Eco53kI GAGCTC 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 341
EcoRII CCWGG 2 cut(s) 406, 440
EcoRV GATATC 1 cut(s) 640
EcoT38I GRGCYC 1 cut(s) 343
FaeI CATG 3 cut(s) 418, 485, 538
FatI CATG 3 cut(s) 414, 481, 534
Fnu4HI GCNGC 2 cut(s) 378, 633
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 2 cut(s) 378, 633
FspBI CTAG 1 cut(s) 314
GlaI GCGC 1 cut(s) 556
GluI GCNGC 2 cut(s) 378, 633
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 3 cut(s) 13, 70, 613
HapII CCGG 1 cut(s) 348
HhaI GCGC 1 cut(s) 557
Hin1II CATG 3 cut(s) 418, 485, 538
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HincII GTYRAC 2 cut(s) 568, 603
HindII GTYRAC 2 cut(s) 568, 603
HinfI GANTC 2 cut(s) 397, 490
HpaII CCGG 1 cut(s) 348
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 568, 603
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 2 cut(s) 107, 535
Hpy8I GTNNAC 2 cut(s) 568, 603
HpyAV CCTTC 4 cut(s) 66, 91, 116, 194
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 4 cut(s) 29, 380, 506, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 338, 446, 629
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 3 cut(s) 418, 485, 538
HspAI GCGC 1 cut(s) 555
Kzo9I GATC 6 cut(s) 16, 52, 213, 268, 523, 667
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 2 cut(s) 88, 338
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 2 cut(s) 364, 580
MaeI CTAG 1 cut(s) 314
MaeII ACGT 1 cut(s) 133
MalI GATC 6 cut(s) 18, 54, 215, 270, 525, 669
MboI GATC 6 cut(s) 16, 52, 213, 268, 523, 667
MboII GAAGA 3 cut(s) 95, 394, 656
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 1 cut(s) 343
MlsI TGGCCA 1 cut(s) 13
MluCI AATT 3 cut(s) 232, 264, 367
MluNI TGGCCA 1 cut(s) 13
MlyI GAGTC 1 cut(s) 484
MnlI CCTC 5 cut(s) 60, 296, 384, 574, 603
Mox20I TGGCCA 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 401
MscI TGGCCA 1 cut(s) 13
Msp20I TGGCCA 1 cut(s) 13
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 2 cut(s) 408, 442
MvaI CCWGG 2 cut(s) 408, 442
MwoI GCNNNNNNNGC 3 cut(s) 338, 446, 629
NdeII GATC 6 cut(s) 16, 52, 213, 268, 523, 667
NlaIII CATG 3 cut(s) 418, 485, 538
PagI TCATGA 1 cut(s) 534
PceI AGGCCT 1 cut(s) 613
PciSI GCTCTTC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 1 cut(s) 397
PflMI CCANNNNNTGG 1 cut(s) 332
PkrI GCNGC 2 cut(s) 379, 634
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 406, 440
PspGI CCWGG 2 cut(s) 406, 440
PsuI RGATCY 1 cut(s) 667
RsaI GTAC 4 cut(s) 132, 183, 356, 461
RsaNI GTAC 4 cut(s) 131, 182, 355, 460
SacI GAGCTC 1 cut(s) 343
SapI GCTCTTC 1 cut(s) 108
SatI GCNGC 2 cut(s) 378, 633
Sau3AI GATC 6 cut(s) 16, 52, 213, 268, 523, 667
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 2 cut(s) 408, 442
SduI GDGCHC 1 cut(s) 343
SetI ASST 5 cut(s) 132, 136, 319, 343, 395
SfaNI GCATC 2 cut(s) 364, 580
Sse9I AATT 3 cut(s) 232, 264, 367
SseBI AGGCCT 1 cut(s) 613
SsiI CCGC 1 cut(s) 632
SspMI CTAG 1 cut(s) 314
SstI GAGCTC 1 cut(s) 343
StuI AGGCCT 1 cut(s) 613
StyD4I CCNGG 2 cut(s) 406, 440
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 465, 642
TasI AATT 3 cut(s) 232, 264, 367
TatI WGTACW 2 cut(s) 354, 459
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 1 cut(s) 397
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 135, 150, 523
TspGWI ACGGA 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.