Rmu_sc0001706.1_g000006

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001706.1
OG0005179
Physical Location & Seq
Forward (+)
21174 .. 25407
4234 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1488 bp
atgtggatgcacaacgtggcaacggcggtgttgatggtgccggtagccaccggaatccttcaccgctttccgacgggtcccaaccagccggtcgttgtgggaaagttttgcagagctgtgattctaggggtgatatactcaacaagcataggagggatgagcactctcactgggacaggtgtgaatctcatattgatcggaatgtggaacagctattttccagaagcaaagccgatcacattcagcacctggttccttttcgggttcccttcggctttgttgatgttcttcgcaatgtgggcgatcctttgcttcttgtattgctcgagaagctcgggccaggctctctcttcttatttcgacaaggactatttgaagaaagagctcgagatgttgggtccaatggcttttgctgagaagatggttttggctttgtttttggtgagaatcaagaacgttaagcgggttacccatgtgtgcatacctcatggttacacgggtgacacgggctccatgtcacctaaagttgtccacgtaccttcgcctcctgatggccaacctgctgtgcaatttgtcgttctgtcaaatccggacttttcctcttcgggctctagacttcaagacctgaggaacccagatagagttgttattgggttaaaatcaaatgtaggggacattcttccattgcaacagttgtacatggggttagttcaaaacccagtagcaatccgcgtagtcccagtacctaatgttgttaacgttgagatagaaaaacttgccaccaatgcaatgcttgctatgaagcttacctacatcaacgtgatatcaagcttgtgcgacaaaacaagtggtgccgatatgagcgtcgttggacaactacttggagaagattacagactggacaacaactacatgactgccacattagcaattggaggccaagaactgatgaaagatactttgtacataaagtatgcttttagtgaagctggattgtacctcgaggcaatgctgactaagaaggttgttcagttagacgtgaagaggagaaaggagtttgttaagctaatgttacggaaaatgctctcacttaggaacagaaggattgccatattcggagtcacgtataagagctgggttctcgatctcacaagatcccctgcgattagcgtatgcaaagccctactgagagagggtgctttcctccaaatatatgaaccctcagtggatgagccaagaatccggcaacttcttggtaatcctgaagcagtggacattttcaatgatctaatagaggcatgtaatggcgcacatgcagttgcatttctggtgccaatgcaccagctacaatttaattttcaaggaatattcaatgtgatgacagaccaagcaggcggtcgaactctgtttatgggctgtgatatgaatgtcaatttcgacattcttagacatatgggcttcctggtttatattagtggaaaaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

495

Amino Acids

54.96

Weight (kDa)

9.03

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 1 - 130 4.3e-11 Citrate transporter
Na_sulph_symp PF00939 12 - 149 4.5e-14 Sodium:sulfate symporter transmembrane region
UDPG_MGDP_dh PF00984 255 - 336 1.5e-14 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 370 - 460 9.8e-12 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1001
Acc36I ACCTGC 1 cut(s) 568
AccB1I GGYRCC 3 cut(s) 37, 851, 1330
AccII CGCG 1 cut(s) 732
AccIII TCCGGA 1 cut(s) 589
AciI CCGC 5 cut(s) 26, 64, 463, 730, 1395
AclI AACGTT 2 cut(s) 456, 759
AclWI GGATC 2 cut(s) 298, 1149
AcoI YGGCCR 1 cut(s) 553
AcuI CTGAAG 1 cut(s) 1284
AdeI CACNNNGTG 1 cut(s) 16
AfaI GTAC 5 cut(s) 537, 698, 744, 965, 998
AfiI CCNNNNNNNGG 1 cut(s) 551
AgsI TTSAA 6 cut(s) 376, 620, 713, 1282, 1361, 1372
AjiI CACGTC 1 cut(s) 1039
AjnI CCWGG 3 cut(s) 248, 339, 1461
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
Alw21I GWGCWC 2 cut(s) 164, 387
AlwI GGATC 2 cut(s) 298, 1149
AlwNI CAGNNNCTG 1 cut(s) 249
Ama87I CYCGRG 4 cut(s) 325, 334, 386, 1001
Aor13HI TCCGGA 1 cut(s) 589
AoxI GGCC 3 cut(s) 337, 553, 937
AspLEI GCGC 1 cut(s) 1310
AspS9I GGNCC 3 cut(s) 77, 337, 398
AsuHPI GGTGA 5 cut(s) 53, 142, 454, 510, 512
AvaI CYCGRG 4 cut(s) 325, 334, 386, 1001
AvaII GGWCC 2 cut(s) 77, 398
AxyI CCTNAGG 1 cut(s) 626
BalI TGGCCA 1 cut(s) 555
BanI GGYRCC 3 cut(s) 37, 851, 1330
BanII GRGCYC 3 cut(s) 387, 512, 611
BarI GAAGNNNNNNTAC 2 cut(s) 794, 826
Bbv12I GWGCWC 2 cut(s) 164, 387
BccI CCATC 3 cut(s) 28, 415, 545
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 3 cut(s) 250, 341, 1463
BfaI CTAG 2 cut(s) 125, 612
BfuAI ACCTGC 1 cut(s) 568
Bme1390I CCNGG 3 cut(s) 250, 341, 1463
Bme18I GGWCC 2 cut(s) 77, 398
BmeT110I CYCGRG 4 cut(s) 325, 334, 386, 1001
BmgBI CACGTC 1 cut(s) 1039
BmgT120I GGNCC 3 cut(s) 77, 337, 398
BmrFI CCNGG 3 cut(s) 250, 341, 1463
BmrI ACTGGG 3 cut(s) 180, 713, 734
BmuI ACTGGG 3 cut(s) 180, 713, 734
BsaAI YACGTR 2 cut(s) 535, 1125
BsaWI WCCGGW 2 cut(s) 50, 589
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse118I RCCGGY 2 cut(s) 40, 88
Bse1I ACTGG 4 cut(s) 175, 719, 740, 903
Bse21I CCTNAGG 1 cut(s) 626
Bse3DI GCAATG 4 cut(s) 300, 683, 795, 1014
BseAI TCCGGA 1 cut(s) 589
BseBI CCWGG 3 cut(s) 250, 341, 1463
BseGI GGATG 3 cut(s) 12, 162, 1234
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMI GCAATG 4 cut(s) 300, 683, 795, 1014
BseMII CTCAG 4 cut(s) 405, 617, 1178, 1236
BseNI ACTGG 4 cut(s) 175, 719, 740, 903
BseRI GAGGAG 1 cut(s) 1060
BseYI CCCAGC 1 cut(s) 1134
Bsh1236I CGCG 1 cut(s) 732
Bsh1285I CGRYCG 2 cut(s) 93, 1399
BshFI GGCC 3 cut(s) 339, 555, 939
BshNI GGYRCC 3 cut(s) 37, 851, 1330
BsiEI CGRYCG 2 cut(s) 93, 1399
BsiHKAI GWGCWC 2 cut(s) 164, 387
BsiHKCI CYCGRG 4 cut(s) 325, 334, 386, 1001
BsiSI CCGG 5 cut(s) 41, 51, 89, 590, 1243
BslFI GGGAC 4 cut(s) 63, 187, 686, 722
BslI CCNNNNNNNGG 1 cut(s) 551
BsmFI GGGAC 4 cut(s) 63, 187, 686, 722
BsnI GGCC 3 cut(s) 339, 555, 939
BsoBI CYCGRG 4 cut(s) 325, 334, 386, 1001
Bsp1286I GDGCHC 4 cut(s) 164, 387, 512, 611
Bsp13I TCCGGA 1 cut(s) 589
Bsp1407I TGTACA 2 cut(s) 696, 963
Bsp143I GATC 6 cut(s) 195, 234, 303, 1144, 1154, 1285
BspACI CCGC 5 cut(s) 26, 64, 463, 730, 1395
BspANI GGCC 3 cut(s) 339, 555, 939
BspCNI CTCAG 4 cut(s) 406, 618, 1179, 1235
BspEI TCCGGA 1 cut(s) 589
BspFNI CGCG 1 cut(s) 732
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 2 cut(s) 298, 1149
BspT107I GGYRCC 3 cut(s) 37, 851, 1330
BsrDI GCAATG 4 cut(s) 300, 683, 795, 1014
BsrFI RCCGGY 2 cut(s) 40, 88
BsrGI TGTACA 2 cut(s) 696, 963
BsrI ACTGG 4 cut(s) 175, 719, 740, 903
BssAI RCCGGY 2 cut(s) 40, 88
BssMI GATC 6 cut(s) 195, 234, 303, 1144, 1154, 1285
Bst2UI CCWGG 3 cut(s) 250, 341, 1463
Bst4CI ACNGT 1 cut(s) 693
Bst6I CTCTTC 3 cut(s) 355, 607, 1037
BstAPI GCANNNNNTGC 1 cut(s) 794
BstAUI TGTACA 2 cut(s) 696, 963
BstBAI YACGTR 2 cut(s) 535, 1125
BstC8I GCNNGC 2 cut(s) 795, 1393
BstDEI CTNAG 8 cut(s) 414, 626, 1017, 1091, 1187, 1222, 1445, 1485
BstEII GGTNACC 1 cut(s) 466
BstF5I GGATG 3 cut(s) 12, 162, 1234
BstFNI CGCG 1 cut(s) 732
BstHHI GCGC 1 cut(s) 1310
BstKTI GATC 6 cut(s) 198, 237, 306, 1147, 1157, 1288
BstMBI GATC 6 cut(s) 195, 234, 303, 1144, 1154, 1285
BstMCI CGRYCG 2 cut(s) 93, 1399
BstMWI GCNNNNNNNGC 5 cut(s) 299, 330, 785, 794, 926
BstNI CCWGG 3 cut(s) 250, 341, 1463
BstNSI RCATGY 2 cut(s) 1302, 1316
BstPI GGTNACC 1 cut(s) 466
BstSCI CCNGG 3 cut(s) 248, 339, 1461
BstUI CGCG 1 cut(s) 732
BstX2I RGATCY 1 cut(s) 1154
BstYI RGATCY 1 cut(s) 1154
Bsu36I CCTNAGG 1 cut(s) 626
BsuRI GGCC 3 cut(s) 339, 555, 939
BtrI CACGTC 1 cut(s) 1039
BtsCI GGATG 3 cut(s) 12, 162, 1234
BtsI GCAGTG 1 cut(s) 1275
BtsIMutI CAGTG 3 cut(s) 168, 1230, 1275
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 2 cut(s) 795, 1393
CaiI CAGNNNCTG 1 cut(s) 249
CfoI GCGC 1 cut(s) 1310
Cfr10I RCCGGY 2 cut(s) 40, 88
Cfr13I GGNCC 3 cut(s) 77, 337, 398
CseI GACGC 1 cut(s) 853
CsiI ACCWGGT 1 cut(s) 248
Csp6I GTAC 5 cut(s) 536, 697, 743, 964, 997
CspCI CAANNNNNGTGG 2 cut(s) 829, 864
CviAII CATG 7 cut(s) 473, 488, 514, 700, 913, 1299, 1313
CviQI GTAC 5 cut(s) 536, 697, 743, 964, 997
DdeI CTNAG 8 cut(s) 414, 626, 1017, 1091, 1187, 1222, 1445, 1485
DpnI GATC 6 cut(s) 197, 236, 305, 1146, 1156, 1287
DpnII GATC 6 cut(s) 195, 234, 303, 1144, 1154, 1285
DraIII CACNNNGTG 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 3 cut(s) 355, 607, 1037
EarI CTCTTC 3 cut(s) 355, 607, 1037
Ecl136II GAGCTC 1 cut(s) 385
Eco24I GRGCYC 3 cut(s) 387, 512, 611
Eco32I GATATC 1 cut(s) 825
Eco47I GGWCC 2 cut(s) 77, 398
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 1284
Eco81I CCTNAGG 1 cut(s) 626
Eco88I CYCGRG 4 cut(s) 325, 334, 386, 1001
Eco91I GGTNACC 1 cut(s) 466
EcoICRI GAGCTC 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 466
EcoRII CCWGG 3 cut(s) 248, 339, 1461
EcoRV GATATC 1 cut(s) 825
EcoT38I GRGCYC 3 cut(s) 387, 512, 611
FaeI CATG 7 cut(s) 476, 491, 517, 703, 916, 1302, 1316
FaqI GGGAC 4 cut(s) 63, 187, 686, 722
FatI CATG 7 cut(s) 472, 487, 513, 699, 912, 1298, 1312
FauI CCCGC 1 cut(s) 456
FauNDI CATATG 1 cut(s) 1452
FokI GGATG 3 cut(s) 19, 169, 1241
FriOI GRGCYC 3 cut(s) 387, 512, 611
FspBI CTAG 2 cut(s) 125, 612
GlaI GCGC 1 cut(s) 1309
GsaI CCCAGC 1 cut(s) 1138
HaeIII GGCC 3 cut(s) 339, 555, 939
HapII CCGG 5 cut(s) 41, 51, 89, 590, 1243
HgaI GACGC 1 cut(s) 853
HhaI GCGC 1 cut(s) 1310
Hin1II CATG 7 cut(s) 476, 491, 517, 703, 916, 1302, 1316
Hin6I GCGC 1 cut(s) 1308
HinP1I GCGC 1 cut(s) 1308
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HindIII AAGCTT 2 cut(s) 803, 829
HinfI GANTC 6 cut(s) 54, 121, 184, 447, 1119, 1239
HpaI GTTAAC 1 cut(s) 757
HpaII CCGG 5 cut(s) 41, 51, 89, 590, 1243
HphI GGTGA 5 cut(s) 53, 142, 454, 510, 512
Hpy166II GTNNAC 3 cut(s) 532, 757, 1273
Hpy188I TCNGA 3 cut(s) 72, 200, 1118
Hpy8I GTNNAC 3 cut(s) 532, 757, 1273
Hpy99I CGWCG 2 cut(s) 76, 869
HpyAV CCTTC 5 cut(s) 68, 279, 549, 1015, 1095
HpyCH4III ACNGT 1 cut(s) 693
HpyCH4IV ACGT 7 cut(s) 15, 456, 534, 759, 819, 1038, 1124
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 330, 785, 794, 926
HpyF3I CTNAG 8 cut(s) 414, 626, 1017, 1091, 1187, 1222, 1445, 1485
HpySE526I ACGT 7 cut(s) 15, 456, 534, 759, 819, 1038, 1124
Hsp92II CATG 7 cut(s) 476, 491, 517, 703, 916, 1302, 1316
HspAI GCGC 1 cut(s) 1308
KflI GGGWCCC 1 cut(s) 77
Kpn2I TCCGGA 1 cut(s) 589
KspAI GTTAAC 1 cut(s) 757
Kzo9I GATC 6 cut(s) 195, 234, 303, 1144, 1154, 1285
LmnI GCTCC 1 cut(s) 515
MabI ACCWGGT 1 cut(s) 248
MaeI CTAG 2 cut(s) 125, 612
MaeII ACGT 7 cut(s) 15, 456, 534, 759, 819, 1038, 1124
MaeIII GTNAC 6 cut(s) 466, 491, 500, 516, 1071, 1120
MalI GATC 6 cut(s) 197, 236, 305, 1146, 1156, 1287
MboI GATC 6 cut(s) 195, 234, 303, 1144, 1154, 1285
MboII GAAGA 8 cut(s) 280, 342, 388, 430, 594, 671, 899, 1054
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 1 cut(s) 1154
MhlI GDGCHC 4 cut(s) 164, 387, 512, 611
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 5 cut(s) 569, 930, 1349, 1354, 1432
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 1 cut(s) 1128
MmeI TCCRAC 2 cut(s) 95, 850
Mox20I TGGCCA 1 cut(s) 555
MroI TCCGGA 1 cut(s) 589
MscI TGGCCA 1 cut(s) 555
MseI TTAA 5 cut(s) 459, 656, 756, 1062, 1353
MslI CAYNNNNRTG 1 cut(s) 818
Msp20I TGGCCA 1 cut(s) 555
MspI CCGG 5 cut(s) 41, 51, 89, 590, 1243
MspR9I CCNGG 3 cut(s) 250, 341, 1463
MunI CAATTG 1 cut(s) 930
MvaI CCWGG 3 cut(s) 250, 341, 1463
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 5 cut(s) 299, 330, 785, 794, 926
NdeI CATATG 1 cut(s) 1452
NdeII GATC 6 cut(s) 195, 234, 303, 1144, 1154, 1285
NlaIII CATG 7 cut(s) 476, 491, 517, 703, 916, 1302, 1316
NmuCI GTSAC 3 cut(s) 500, 516, 1120
NspI RCATGY 2 cut(s) 1302, 1316
PaeR7I CTCGAG 3 cut(s) 325, 386, 1001
PfeI GAWTC 5 cut(s) 54, 121, 184, 447, 1239
PleI GAGTC 1 cut(s) 1127
PpsI GAGTC 1 cut(s) 1127
Ppu21I YACGTR 2 cut(s) 535, 1125
PpuMI RGGWCCY 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 387
Psp1406I AACGTT 2 cut(s) 456, 759
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 3 cut(s) 248, 339, 1461
PspEI GGTNACC 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 1134
PspGI CCWGG 3 cut(s) 248, 339, 1461
PspPI GGNCC 3 cut(s) 77, 337, 398
PspPPI RGGWCCY 1 cut(s) 77
PspXI VCTCGAGB 1 cut(s) 1001
PstNI CAGNNNCTG 1 cut(s) 249
PsuI RGATCY 1 cut(s) 1154
RsaI GTAC 5 cut(s) 537, 698, 744, 965, 998
RsaNI GTAC 5 cut(s) 536, 697, 743, 964, 997
RseI CAYNNNNRTG 1 cut(s) 818
SacI GAGCTC 1 cut(s) 387
SaqAI TTAA 5 cut(s) 459, 656, 756, 1062, 1353
Sau3AI GATC 6 cut(s) 195, 234, 303, 1144, 1154, 1285
Sau96I GGNCC 3 cut(s) 77, 337, 398
SchI GAGTC 1 cut(s) 1128
ScrFI CCNGG 3 cut(s) 250, 341, 1463
SduI GDGCHC 4 cut(s) 164, 387, 512, 611
SexAI ACCWGGT 1 cut(s) 248
Sfr274I CTCGAG 3 cut(s) 325, 386, 1001
SinI GGWCC 2 cut(s) 77, 398
SlaI CTCGAG 3 cut(s) 325, 386, 1001
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 3 cut(s) 325, 386, 1001
SmoI CTYRAG 3 cut(s) 325, 386, 1001
Sse9I AATT 5 cut(s) 569, 930, 1349, 1354, 1432
SsiI CCGC 5 cut(s) 26, 64, 463, 730, 1395
SspI AATATT 1 cut(s) 1368
SspMI CTAG 2 cut(s) 125, 612
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 3 cut(s) 248, 339, 1461
TaaI ACNGT 1 cut(s) 693
TaiI ACGT 7 cut(s) 18, 459, 537, 762, 822, 1041, 1127
TaqI TCGA 7 cut(s) 326, 360, 387, 1002, 1143, 1399, 1437
TasI AATT 5 cut(s) 569, 930, 1349, 1354, 1432
TatI WGTACW 2 cut(s) 696, 963
TfiI GAWTC 5 cut(s) 54, 121, 184, 447, 1239
Tru1I TTAA 5 cut(s) 459, 656, 756, 1062, 1353
Tru9I TTAA 5 cut(s) 459, 656, 756, 1062, 1353
TscAI CASTG 3 cut(s) 175, 1230, 1275
TseFI GTSAC 3 cut(s) 500, 516, 1120
Tsp45I GTSAC 3 cut(s) 500, 516, 1120
TspDTI ATGAA 4 cut(s) 815, 965, 1230, 1439
TspGWI ACGGA 1 cut(s) 1090
TspRI CASTG 3 cut(s) 175, 1230, 1275
VpaK11BI GGWCC 2 cut(s) 77, 398
XbaI TCTAGA 1 cut(s) 611
XceI RCATGY 2 cut(s) 1302, 1316
XhoI CTCGAG 3 cut(s) 325, 386, 1001
XspI CTAG 2 cut(s) 125, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.