Rmu_sc0001817.1_g000008

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001817.1
OG0005179
Physical Location & Seq
Forward (+)
50868 .. 52241
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1374 bp
atgaaccctctaccagcgaattttgcggcagttacacacatatgctgtattgggttgcgaagagagagtgtcgcggatatggctgttctagcccagcaccatcccaacaaaacagtaaccatagttgatttcgaccaagccaaactgcaattctggttaggagccaatgtcgattgggttgagcccggcttaggagccttagtaggtatggtaaacaatttggggttcagtaaccaagtagaacaagtcattaatcagtcccaggttatttttatatgggttgagattcccaccaagagaggtggtttaccgggtttagataccactgagtgggagagagcagtgagaacaatcatgcaagcgtctgctacttcgaaaattgttgttgagaagagcaccatgcctgttgacatgtttaatctcaccactagatttctttctcaaaggccacaagctcaagttcaacagaacattcagtttgctgttttctccaatcccgaactttcttgcccaggtcaaatgataaatgacatgcaattcccagatcaagtgataatagcacggaagtcagaggtaggagatactgatatcttagtggaaatgtatgcacagtgggttcatccacagagaattatagttcttcctaatcatctatcagcagaacttggaaagatcatcacaagtgtgatggcaggtttgaagattacggtgatgaatgtcatttcaagctactgtgaaaaagttggggcaaattttaatcatgtcaaacagatgctaggaagggattacaggtttgaagatgcatttatggagtcaacattaggaattggtgggcctgatctactaaaggatatagtgtattgcaaggatgctcttcaaaatgtgggattgatcacagaggctaagctattgtctgacataattagattggataagaagaagagggagcattttgtgcaattggtgctaaataatatgtctactttggcagggaagagggttgctgtatatggggtcacatacaagagcaacatggcagatctcaccaattcccctgcagtgagtgtttgtaaagcacttcagaaggaaggggccatcattaggatttatgatccactaagagatgaaaatgcaatcttgaactgcttccgtaatcgtgtaagggtgagagtagttgctgatccacaacaagcatatcaaggagctcatgctattttttttctagtgaatacgaaccttcagcataatttccaacagatgagggctgcaatggtagagccaccattcttatttttcgcctgcagactgaatgttaactatgatgctcttaggttgcagggatttcaagttcatgtctttggtaatcaagaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

457

Amino Acids

51.27

Weight (kDa)

7.62

Isoelectric Point (pI)

30.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 13 - 190 3.7e-27 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh PF00984 219 - 305 3.4e-13 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 335 - 431 3.4e-15 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 683
AccB7I CCANNNNNTGG 1 cut(s) 330
AccI GTMKAC 1 cut(s) 980
AccII CGCG 1 cut(s) 74
AciI CCGC 2 cut(s) 26, 74
AclWI GGATC 2 cut(s) 1106, 1175
AcsI RAATTY 2 cut(s) 19, 751
AcuI CTGAAG 2 cut(s) 1064, 1223
AdeI CACNNNGTG 1 cut(s) 330
AfiI CCNNNNNNNGG 3 cut(s) 191, 330, 1101
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 7 cut(s) 464, 700, 726, 797, 878, 1141, 1346
AjnI CCWGG 2 cut(s) 261, 511
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AleI CACNNNNGTG 1 cut(s) 683
AloI GAACNNNNNNTCC 2 cut(s) 1332, 1364
AluBI AGCT 4 cut(s) 455, 729, 907, 1205
AluI AGCT 4 cut(s) 455, 729, 907, 1205
Alw21I GWGCWC 2 cut(s) 398, 1207
AlwI GGATC 2 cut(s) 1106, 1175
AoxI GGCC 3 cut(s) 446, 833, 1092
ApeKI GCWGC 1 cut(s) 1265
ApoI RAATTY 2 cut(s) 19, 751
AseI ATTAAT 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 1145
AspS9I GGNCC 2 cut(s) 833, 1092
AsuC2I CCSGG 2 cut(s) 186, 312
AsuHPI GGTGA 4 cut(s) 415, 721, 1036, 1177
AsuII TTCGAA 1 cut(s) 374
BanII GRGCYC 2 cut(s) 186, 1207
Bbv12I GWGCWC 2 cut(s) 398, 1207
BbvI GCAGC 1 cut(s) 1252
BccI CCATC 3 cut(s) 108, 682, 1103
BciT130I CCWGG 2 cut(s) 263, 513
BclI TGATCA 1 cut(s) 891
BcnI CCSGG 2 cut(s) 186, 312
BfaI CTAG 4 cut(s) 89, 429, 776, 1223
BfmI CTRYAG 2 cut(s) 1056, 1300
BfuAI ACCTGC 1 cut(s) 683
BglII AGATCT 1 cut(s) 1039
BisI GCNGC 2 cut(s) 27, 1266
BlpI GCTNAGC 1 cut(s) 903
BlsI GCNGC 2 cut(s) 28, 1267
Bme1390I CCNGG 4 cut(s) 186, 263, 312, 513
BmgT120I GGNCC 2 cut(s) 833, 1092
BmiI GGNNCC 3 cut(s) 163, 196, 1093
BmrFI CCNGG 4 cut(s) 186, 263, 312, 513
BmsI GCATC 4 cut(s) 762, 790, 859, 1312
Bpu10I CCTNAGC 1 cut(s) 190
Bpu1102I GCTNAGC 1 cut(s) 903
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 441
BpuMI CCSGG 2 cut(s) 186, 312
BsaJI CCNNGG 2 cut(s) 261, 511
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 186, 216
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 330, 1101
Bse3DI GCAATG 1 cut(s) 1275
BseBI CCWGG 2 cut(s) 263, 513
BseDI CCNNGG 2 cut(s) 261, 511
BseGI GGATG 3 cut(s) 100, 619, 874
BseLI CCNNNNNNNGG 3 cut(s) 191, 330, 1101
BseMI GCAATG 1 cut(s) 1275
BseMII CTCAG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 1252
BseYI CCCAGC 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 3 cut(s) 448, 835, 1094
BsiHKAI GWGCWC 2 cut(s) 398, 1207
BsiSI CCGG 2 cut(s) 186, 311
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 3 cut(s) 191, 330, 1101
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 3 cut(s) 448, 835, 1094
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 3 cut(s) 186, 398, 1207
Bsp143I GATC 7 cut(s) 544, 672, 838, 891, 1039, 1111, 1180
Bsp1720I GCTNAGC 1 cut(s) 903
BspACI CCGC 2 cut(s) 26, 74
BspANI GGCC 3 cut(s) 448, 835, 1094
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 3 cut(s) 163, 196, 1093
BspMAI CTGCAG 2 cut(s) 1060, 1304
BspMI ACCTGC 1 cut(s) 683
BspPI GGATC 2 cut(s) 1106, 1175
BspQI GCTCTTC 2 cut(s) 386, 879
BspT104I TTCGAA 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 1275
BssECI CCNNGG 2 cut(s) 261, 511
BssMI GATC 7 cut(s) 544, 672, 838, 891, 1039, 1111, 1180
Bst2UI CCWGG 2 cut(s) 263, 513
Bst4CI ACNGT 4 cut(s) 115, 612, 709, 734
Bst6I CTCTTC 5 cut(s) 55, 386, 879, 935, 989
BstAPI GCANNNNNTGC 2 cut(s) 955, 964
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 360, 1300
BstDEI CTNAG 7 cut(s) 190, 199, 327, 592, 903, 1118, 1328
BstF5I GGATG 3 cut(s) 100, 619, 874
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 7 cut(s) 547, 675, 841, 894, 1042, 1114, 1183
BstMBI GATC 7 cut(s) 544, 672, 838, 891, 1039, 1111, 1180
BstMWI GCNNNNNNNGC 5 cut(s) 23, 80, 89, 955, 964
BstNI CCWGG 2 cut(s) 263, 513
BstNSI RCATGY 2 cut(s) 415, 535
BstSCI CCNGG 4 cut(s) 184, 261, 310, 511
BstSFI CTRYAG 2 cut(s) 1056, 1300
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 1252
BstX2I RGATCY 1 cut(s) 1039
BstYI RGATCY 1 cut(s) 1039
BsuRI GGCC 3 cut(s) 448, 835, 1094
BtsCI GGATG 3 cut(s) 100, 619, 874
BtsI GCAGTG 2 cut(s) 348, 1065
BtsIMutI CAGTG 4 cut(s) 324, 348, 617, 1065
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 2 cut(s) 360, 1300
Cfr13I GGNCC 2 cut(s) 833, 1092
CseI GACGC 1 cut(s) 351
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 8 cut(s) 355, 400, 412, 532, 761, 1033, 1208, 1352
DdeI CTNAG 7 cut(s) 190, 199, 327, 592, 903, 1118, 1328
DpnI GATC 7 cut(s) 546, 674, 840, 893, 1041, 1113, 1182
DpnII GATC 7 cut(s) 544, 672, 838, 891, 1039, 1111, 1180
DraIII CACNNNGTG 1 cut(s) 330
Eam1104I CTCTTC 5 cut(s) 55, 386, 879, 935, 989
EarI CTCTTC 5 cut(s) 55, 386, 879, 935, 989
Ecl136II GAGCTC 1 cut(s) 1205
Eco24I GRGCYC 2 cut(s) 186, 1207
Eco32I GATATC 1 cut(s) 589
Eco53kI GAGCTC 1 cut(s) 1205
Eco57I CTGAAG 2 cut(s) 1064, 1223
EcoICRI GAGCTC 1 cut(s) 1205
EcoRII CCWGG 2 cut(s) 261, 511
EcoRV GATATC 1 cut(s) 589
EcoT22I ATGCAT 1 cut(s) 805
EcoT38I GRGCYC 2 cut(s) 186, 1207
FaeI CATG 8 cut(s) 358, 403, 415, 535, 764, 1036, 1211, 1355
FaqI GGGAC 1 cut(s) 244
FatI CATG 8 cut(s) 354, 399, 411, 531, 760, 1032, 1207, 1351
FauNDI CATATG 1 cut(s) 41
FbaI TGATCA 1 cut(s) 891
FblI GTMKAC 1 cut(s) 980
Fnu4HI GCNGC 2 cut(s) 27, 1266
FokI GGATG 3 cut(s) 87, 606, 881
FriOI GRGCYC 2 cut(s) 186, 1207
Fsp4HI GCNGC 2 cut(s) 27, 1266
FspBI CTAG 4 cut(s) 89, 429, 776, 1223
GluI GCNGC 2 cut(s) 27, 1266
GsaI CCCAGC 1 cut(s) 97
HaeIII GGCC 3 cut(s) 448, 835, 1094
HapII CCGG 2 cut(s) 186, 311
HgaI GACGC 1 cut(s) 351
Hin1II CATG 8 cut(s) 358, 403, 415, 535, 764, 1036, 1211, 1355
HincII GTYRAC 3 cut(s) 409, 816, 1315
HindII GTYRAC 3 cut(s) 409, 816, 1315
HinfI GANTC 2 cut(s) 286, 812
HpaI GTTAAC 1 cut(s) 1315
HpaII CCGG 2 cut(s) 186, 311
HphI GGTGA 4 cut(s) 415, 721, 1036, 1177
Hpy166II GTNNAC 6 cut(s) 214, 308, 409, 816, 981, 1315
Hpy188I TCNGA 3 cut(s) 571, 916, 1083
Hpy188III TCNNGA 3 cut(s) 497, 1138, 1367
Hpy8I GTNNAC 6 cut(s) 214, 308, 409, 816, 981, 1315
HpyAV CCTTC 4 cut(s) 774, 1078, 1082, 1247
HpyCH4III ACNGT 4 cut(s) 115, 612, 709, 734
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 80, 89, 955, 964
HpyF3I CTNAG 7 cut(s) 190, 199, 327, 592, 903, 1118, 1328
Hsp92II CATG 8 cut(s) 358, 403, 415, 535, 764, 1036, 1211, 1355
Ksp22I TGATCA 1 cut(s) 891
KspAI GTTAAC 1 cut(s) 1315
Kzo9I GATC 7 cut(s) 544, 672, 838, 891, 1039, 1111, 1180
LguI GCTCTTC 2 cut(s) 386, 879
LmnI GCTCC 4 cut(s) 161, 194, 946, 1202
Lsp1109I GCAGC 1 cut(s) 1252
LweI GCATC 4 cut(s) 762, 790, 859, 1312
MaeI CTAG 4 cut(s) 89, 429, 776, 1223
MaeIII GTNAC 4 cut(s) 31, 115, 230, 1015
MalI GATC 7 cut(s) 546, 674, 840, 893, 1041, 1113, 1182
MboI GATC 7 cut(s) 544, 672, 838, 891, 1039, 1111, 1180
MboII GAAGA 9 cut(s) 72, 403, 632, 712, 809, 866, 949, 952, 1006
MfeI CAATTG 1 cut(s) 959
MflI RGATCY 1 cut(s) 1039
MhlI GDGCHC 3 cut(s) 186, 398, 1207
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 1 cut(s) 1276
MnlI CCTC 7 cut(s) 18, 293, 565, 892, 936, 990, 1254
Mph1103I ATGCAT 1 cut(s) 805
MroXI GAANNNNTTC 1 cut(s) 1145
MseI TTAA 4 cut(s) 252, 417, 756, 1314
MslI CAYNNNNRTG 2 cut(s) 40, 683
MspI CCGG 2 cut(s) 186, 311
MspR9I CCNGG 4 cut(s) 186, 263, 312, 513
MunI CAATTG 1 cut(s) 959
MvaI CCWGG 2 cut(s) 263, 513
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 5 cut(s) 23, 80, 89, 955, 964
NciI CCSGG 2 cut(s) 186, 312
NdeI CATATG 1 cut(s) 41
NdeII GATC 7 cut(s) 544, 672, 838, 891, 1039, 1111, 1180
NlaIII CATG 8 cut(s) 358, 403, 415, 535, 764, 1036, 1211, 1355
NlaIV GGNNCC 3 cut(s) 163, 196, 1093
NmuCI GTSAC 1 cut(s) 1015
NsiI ATGCAT 1 cut(s) 805
NspI RCATGY 2 cut(s) 415, 535
NspV TTCGAA 1 cut(s) 374
OliI CACNNNNGTG 1 cut(s) 683
PciI ACATGT 1 cut(s) 411
PciSI GCTCTTC 2 cut(s) 386, 879
PdmI GAANNNNTTC 1 cut(s) 1145
PfeI GAWTC 1 cut(s) 286
PflMI CCANNNNNTGG 1 cut(s) 330
PkrI GCNGC 2 cut(s) 28, 1267
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
PscI ACATGT 1 cut(s) 411
PshBI ATTAAT 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 1207
Psp6I CCWGG 2 cut(s) 261, 511
PspFI CCCAGC 1 cut(s) 93
PspGI CCWGG 2 cut(s) 261, 511
PspN4I GGNNCC 3 cut(s) 163, 196, 1093
PspPI GGNCC 2 cut(s) 833, 1092
PstI CTGCAG 2 cut(s) 1060, 1304
PsuI RGATCY 1 cut(s) 1039
RseI CAYNNNNRTG 2 cut(s) 40, 683
SacI GAGCTC 1 cut(s) 1207
SapI GCTCTTC 2 cut(s) 386, 879
SaqAI TTAA 4 cut(s) 252, 417, 756, 1314
SatI GCNGC 2 cut(s) 27, 1266
Sau3AI GATC 7 cut(s) 544, 672, 838, 891, 1039, 1111, 1180
Sau96I GGNCC 2 cut(s) 833, 1092
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 4 cut(s) 186, 263, 312, 513
SduI GDGCHC 3 cut(s) 186, 398, 1207
SfaNI GCATC 4 cut(s) 762, 790, 859, 1312
SfcI CTRYAG 2 cut(s) 1056, 1300
SfuI TTCGAA 1 cut(s) 374
SmiMI CAYNNNNRTG 2 cut(s) 40, 683
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
SsiI CCGC 2 cut(s) 26, 74
SspMI CTAG 4 cut(s) 89, 429, 776, 1223
SstI GAGCTC 1 cut(s) 1207
StyD4I CCNGG 4 cut(s) 184, 261, 310, 511
TaaI ACNGT 4 cut(s) 115, 612, 709, 734
TaqI TCGA 3 cut(s) 132, 171, 374
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 4 cut(s) 252, 417, 756, 1314
Tru9I TTAA 4 cut(s) 252, 417, 756, 1314
TscAI CASTG 4 cut(s) 331, 348, 617, 1065
TseFI GTSAC 1 cut(s) 1015
TseI GCWGC 1 cut(s) 1265
Tsp45I GTSAC 1 cut(s) 1015
TspDTI ATGAA 5 cut(s) 17, 608, 728, 1140, 1340
TspGWI ACGGA 2 cut(s) 577, 1139
TspRI CASTG 4 cut(s) 331, 348, 617, 1065
Van91I CCANNNNNTGG 1 cut(s) 330
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 2 cut(s) 19, 751
XceI RCATGY 2 cut(s) 415, 535
XmiI GTMKAC 1 cut(s) 980
XmnI GAANNNNTTC 1 cut(s) 1145
XspI CTAG 4 cut(s) 89, 429, 776, 1223
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.