Rmu_sc0001879.1_g000028

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001879.1
OG0002998
Physical Location & Seq
Forward (+)
85788 .. 88261
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1299 bp
atgaacaacaagagcatatcaatggcagtgtcggatgacgaatctgacgagctcggccggttgcgcgttcgagttcgccggaagcgcaagaaactccaccaccgattcaagaacggagtggtgaggaatctggtcaggtactggcccctgttctgggcccttgtaatttttctggcggccatttgtttgcttctgtatgaggcatggactatcggctggaaatccccacaactcaataactcaaaactcactgcggtgaacaatgatttgaatcggcttgatcctatcactcaggttgttcgtggcgttacgcaacgttgcttgccaatcttacctcctgaacaacttgagcatctggaaattcctgtgccccaagattccactagtcctgttaaaaaattgatatacacagctgagaatgatgctccgttgttaggacggtacaacaccctatctcaagagcacacagatgcaacaagatttaatttgtttactggaaatcaaactctagatcagagagatgaaatgtttaaggtaaatgaaactgttactataaactgtggtttctacagtgaaagtggtgggtttaagatctcaaatgaagacaagaattacatgaaaagttgtgacattgtagtctccacttgtgcatttggtagtggagatgatctttatcaacccattggaatgtcagaggcatcccttcagaaggtttgctttgttgctttttgggatgaagttactgtgagtactcaagagtcagctgaacatagaattggtgaggatggatttattgggaaatggcgcattgtggttgtaagagatctcccttttgcggaccaaaggttaaatggaaaaatcccaaagatgttggcgcatcgtctttttcctcattcaaagtattccatttgggtagattcgaagtcccaatttaggagggaccctttaggtgtgctcgaagctcttctctggcgtacaaattctgtacttgcaatctcagaacatggagctcgtagtagcatttatgacgaggcgaaggctgttgtcaagaaaaacaaggccaaacctgaagaagttgagctgcagttgactcaatatcggagtgatggcttgccagaagacaagcgattcaatggaaagaaagctctagcggaagcatctgttatcgtgagggagcatactccactgactaatatgtttatgtgcctctggttcaacgaggcggttcgtttgttcataagcttttaccagaaaagattttcaccttaccattcgagtgcttggttagaagttgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616 Dirigent

Protein Analysis

432

Amino Acids

49.54

Weight (kDa)

8.79

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 154 - 411 3e-102 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 635
AccII CGCG 1 cut(s) 66
AciI CCGC 5 cut(s) 176, 254, 836, 1151, 1223
AclI AACGTT 1 cut(s) 316
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 2 cut(s) 55, 177
AcsI RAATTY 2 cut(s) 360, 979
AcuI CTGAAG 2 cut(s) 689, 1089
AfaI GTAC 5 cut(s) 140, 443, 751, 976, 987
AfiI CCNNNNNNNGG 6 cut(s) 153, 154, 434, 709, 835, 933
AgsI TTSAA 5 cut(s) 109, 271, 897, 1132, 1216
AhlI ACTAGT 1 cut(s) 383
AjuI GAANNNNNNNTTGG 2 cut(s) 759, 791
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 8 cut(s) 52, 413, 764, 962, 1010, 1081, 1145, 1242
AluI AGCT 8 cut(s) 52, 413, 764, 962, 1010, 1081, 1145, 1242
Alw21I GWGCWC 4 cut(s) 54, 465, 957, 1012
Alw26I GTCTC 1 cut(s) 643
AlwI GGATC 1 cut(s) 275
AlwNI CAGNNNCTG 1 cut(s) 141
AoxI GGCC 5 cut(s) 55, 143, 156, 177, 1059
ApaI GGGCCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 1081
ApoI RAATTY 2 cut(s) 360, 979
Asp700I GAANNNNTTC 1 cut(s) 963
AspLEI GCGC 4 cut(s) 66, 87, 807, 877
AspS9I GGNCC 5 cut(s) 144, 156, 157, 838, 940
AsuHPI GGTGA 4 cut(s) 133, 268, 791, 1254
AsuII TTCGAA 1 cut(s) 920
AvaII GGWCC 2 cut(s) 838, 940
BaeGI GKGCMC 2 cut(s) 160, 372
BanII GRGCYC 3 cut(s) 54, 160, 1012
BbsI GAAGAC 2 cut(s) 609, 1125
Bbv12I GWGCWC 4 cut(s) 54, 465, 957, 1012
BbvI GCAGC 1 cut(s) 1068
BccI CCATC 2 cut(s) 779, 1100
BcoDI GTCTC 1 cut(s) 643
BcuI ACTAGT 1 cut(s) 383
BfaI CTAG 3 cut(s) 384, 509, 1148
BfmI CTRYAG 2 cut(s) 568, 1082
BglII AGATCT 2 cut(s) 591, 823
BisI GCNGC 2 cut(s) 177, 1082
BlsI GCNGC 2 cut(s) 178, 1083
BmcAI AGTACT 1 cut(s) 751
Bme18I GGWCC 2 cut(s) 838, 940
BmgT120I GGNCC 5 cut(s) 144, 156, 157, 838, 940
BmiI GGNNCC 4 cut(s) 146, 158, 941, 942
BmsI GCATC 6 cut(s) 361, 412, 460, 707, 886, 1166
BpiI GAAGAC 2 cut(s) 609, 1125
Bpu14I TTCGAA 1 cut(s) 920
BpuEI CTTGAG 3 cut(s) 368, 441, 738
BsaBI GATNNNNATC 2 cut(s) 270, 672
Bsc4I CCNNNNNNNGG 6 cut(s) 153, 154, 434, 709, 835, 933
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 146, 499
Bse8I GATNNNNATC 2 cut(s) 270, 672
BseGI GGATG 4 cut(s) 40, 698, 739, 790
BseJI GATNNNNATC 2 cut(s) 270, 672
BseLI CCNNNNNNNGG 6 cut(s) 153, 154, 434, 709, 835, 933
BseMII CTCAG 3 cut(s) 305, 405, 1011
BseNI ACTGG 2 cut(s) 146, 499
BseSI GKGCMC 2 cut(s) 160, 372
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 1068
Bsh1236I CGCG 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 5 cut(s) 57, 145, 158, 179, 1061
BsiEI CGRYCG 1 cut(s) 58
BsiHKAI GWGCWC 4 cut(s) 54, 465, 957, 1012
BsiSI CCGG 2 cut(s) 58, 79
BslFI GGGAC 2 cut(s) 910, 953
BslI CCNNNNNNNGG 6 cut(s) 153, 154, 434, 709, 835, 933
BsmAI GTCTC 1 cut(s) 643
BsmFI GGGAC 2 cut(s) 910, 953
BsnI GGCC 5 cut(s) 57, 145, 158, 179, 1061
Bsp119I TTCGAA 1 cut(s) 920
Bsp120I GGGCCC 1 cut(s) 156
Bsp1286I GDGCHC 6 cut(s) 54, 160, 372, 465, 957, 1012
Bsp143I GATC 5 cut(s) 280, 511, 591, 667, 823
BspACI CCGC 5 cut(s) 176, 254, 836, 1151, 1223
BspANI GGCC 5 cut(s) 57, 145, 158, 179, 1061
BspCNI CTCAG 3 cut(s) 304, 406, 1010
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 4 cut(s) 146, 158, 941, 942
BspMAI CTGCAG 1 cut(s) 1086
BspPI GGATC 1 cut(s) 275
BspQI GCTCTTC 1 cut(s) 969
BspT104I TTCGAA 1 cut(s) 920
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 2 cut(s) 146, 499
BssAI RCCGGY 1 cut(s) 57
BssMI GATC 5 cut(s) 280, 511, 591, 667, 823
Bst4CI ACNGT 5 cut(s) 441, 547, 560, 572, 745
Bst6I CTCTTC 1 cut(s) 969
BstBI TTCGAA 1 cut(s) 920
BstC8I GCNNGC 2 cut(s) 323, 1112
BstDEI CTNAG 3 cut(s) 291, 414, 997
BstENI CCTNNNNNAGG 1 cut(s) 707
BstF5I GGATG 4 cut(s) 40, 698, 739, 790
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 4 cut(s) 66, 87, 807, 877
BstKTI GATC 5 cut(s) 283, 514, 594, 670, 826
BstMAI GTCTC 1 cut(s) 643
BstMBI GATC 5 cut(s) 280, 511, 591, 667, 823
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 63, 84
BstSFI CTRYAG 2 cut(s) 568, 1082
BstSLI GKGCMC 2 cut(s) 160, 372
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 1068
BstV2I GAAGAC 2 cut(s) 609, 1125
BstX2I RGATCY 2 cut(s) 591, 823
BstYI RGATCY 2 cut(s) 591, 823
BstZI CGGCCG 1 cut(s) 55
BsuRI GGCC 5 cut(s) 57, 145, 158, 179, 1061
BtsCI GGATG 4 cut(s) 40, 698, 739, 790
BtsI GCAGTG 2 cut(s) 33, 249
BtsIMutI CAGTG 4 cut(s) 33, 249, 577, 1184
Cac8I GCNNGC 2 cut(s) 323, 1112
CaiI CAGNNNCTG 1 cut(s) 141
CfoI GCGC 4 cut(s) 66, 87, 807, 877
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 5 cut(s) 144, 156, 157, 838, 940
Csp6I GTAC 5 cut(s) 139, 442, 750, 975, 986
CviAII CATG 3 cut(s) 204, 616, 1004
CviQI GTAC 5 cut(s) 139, 442, 750, 975, 986
DdeI CTNAG 3 cut(s) 291, 414, 997
DpnI GATC 5 cut(s) 282, 513, 593, 669, 825
DpnII GATC 5 cut(s) 280, 511, 591, 667, 823
DrdI GACNNNNNNGTC 1 cut(s) 635
DseDI GACNNNNNNGTC 1 cut(s) 635
EaeI YGGCCR 2 cut(s) 55, 177
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 969
EarI CTCTTC 1 cut(s) 969
Ecl136II GAGCTC 2 cut(s) 52, 1010
EclXI CGGCCG 1 cut(s) 55
Eco24I GRGCYC 3 cut(s) 54, 160, 1012
Eco47I GGWCC 2 cut(s) 838, 940
Eco52I CGGCCG 1 cut(s) 55
Eco53kI GAGCTC 2 cut(s) 52, 1010
Eco57I CTGAAG 2 cut(s) 689, 1089
EcoICRI GAGCTC 2 cut(s) 52, 1010
EcoNI CCTNNNNNAGG 1 cut(s) 707
EcoO109I RGGNCCY 2 cut(s) 157, 940
EcoT38I GRGCYC 3 cut(s) 54, 160, 1012
FaeI CATG 3 cut(s) 207, 619, 1007
FalI AAGNNNNNCTT 2 cut(s) 701, 733
FaqI GGGAC 2 cut(s) 910, 953
FatI CATG 3 cut(s) 203, 615, 1003
Fnu4HI GCNGC 2 cut(s) 177, 1082
FokI GGATG 4 cut(s) 47, 685, 746, 797
FriOI GRGCYC 3 cut(s) 54, 160, 1012
Fsp4HI GCNGC 2 cut(s) 177, 1082
FspBI CTAG 3 cut(s) 384, 509, 1148
GlaI GCGC 4 cut(s) 65, 86, 806, 876
GluI GCNGC 2 cut(s) 177, 1082
HaeIII GGCC 5 cut(s) 57, 145, 158, 179, 1061
HapII CCGG 2 cut(s) 58, 79
HhaI GCGC 4 cut(s) 66, 87, 807, 877
Hin1II CATG 3 cut(s) 207, 619, 1007
Hin6I GCGC 4 cut(s) 64, 85, 805, 875
HinP1I GCGC 4 cut(s) 64, 85, 805, 875
HincII GTYRAC 1 cut(s) 1089
HindII GTYRAC 1 cut(s) 1089
HindIII AAGCTT 1 cut(s) 1240
HinfI GANTC 9 cut(s) 41, 105, 127, 271, 377, 758, 917, 1090, 1128
HpaII CCGG 2 cut(s) 58, 79
HphI GGTGA 4 cut(s) 133, 268, 791, 1254
Hpy166II GTNNAC 3 cut(s) 259, 492, 1089
Hpy188I TCNGA 7 cut(s) 34, 46, 516, 694, 708, 1000, 1101
Hpy188III TCNNGA 8 cut(s) 109, 338, 356, 458, 509, 755, 1048, 1168
Hpy8I GTNNAC 3 cut(s) 259, 492, 1089
HpyAV CCTTC 3 cut(s) 703, 713, 1030
HpyCH4III ACNGT 5 cut(s) 441, 547, 560, 572, 745
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 5 cut(s) 473, 650, 992, 1084, 1295
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 84
HpyF3I CTNAG 3 cut(s) 291, 414, 997
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 3 cut(s) 207, 619, 1007
HspAI GCGC 4 cut(s) 64, 85, 805, 875
KflI GGGWCCC 1 cut(s) 940
Kzo9I GATC 5 cut(s) 280, 511, 591, 667, 823
LguI GCTCTTC 1 cut(s) 969
LmnI GCTCC 3 cut(s) 430, 1007, 1174
Lsp1109I GCAGC 1 cut(s) 1068
LweI GCATC 6 cut(s) 361, 412, 460, 707, 886, 1166
MaeI CTAG 3 cut(s) 384, 509, 1148
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 4 cut(s) 307, 547, 626, 739
MalI GATC 5 cut(s) 282, 513, 593, 669, 825
MboI GATC 5 cut(s) 280, 511, 591, 667, 823
MboII GAAGA 4 cut(s) 614, 956, 1082, 1130
MflI RGATCY 2 cut(s) 591, 823
MhlI GDGCHC 6 cut(s) 54, 160, 372, 465, 957, 1012
MluCI AATT 8 cut(s) 165, 360, 398, 484, 610, 774, 929, 979
MlyI GAGTC 2 cut(s) 767, 1084
MmeI TCCRAC 1 cut(s) 12
MroXI GAANNNNTTC 1 cut(s) 963
MseI TTAA 5 cut(s) 393, 483, 531, 588, 848
MslI CAYNNNNRTG 5 cut(s) 20, 254, 468, 686, 1275
MspA1I CMGCKG 2 cut(s) 413, 764
MspI CCGG 2 cut(s) 58, 79
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 63, 84
NdeII GATC 5 cut(s) 280, 511, 591, 667, 823
NlaIII CATG 3 cut(s) 207, 619, 1007
NlaIV GGNNCC 4 cut(s) 146, 158, 941, 942
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 626
NspV TTCGAA 1 cut(s) 920
OliI CACNNNNGTG 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 969
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 963
PfeI GAWTC 7 cut(s) 41, 105, 127, 271, 377, 917, 1128
PkrI GCNGC 2 cut(s) 178, 1083
PleI GAGTC 2 cut(s) 766, 1084
PpsI GAGTC 2 cut(s) 766, 1084
PpuMI RGGWCCY 1 cut(s) 940
Psp124BI GAGCTC 2 cut(s) 54, 1012
Psp1406I AACGTT 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 940
PspN4I GGNNCC 4 cut(s) 146, 158, 941, 942
PspOMI GGGCCC 1 cut(s) 156
PspPI GGNCC 5 cut(s) 144, 156, 157, 838, 940
PspPPI RGGWCCY 1 cut(s) 940
PstI CTGCAG 1 cut(s) 1086
PstNI CAGNNNCTG 1 cut(s) 141
PsuI RGATCY 2 cut(s) 591, 823
PvuII CAGCTG 2 cut(s) 413, 764
RsaI GTAC 5 cut(s) 140, 443, 751, 976, 987
RsaNI GTAC 5 cut(s) 139, 442, 750, 975, 986
RseI CAYNNNNRTG 5 cut(s) 20, 254, 468, 686, 1275
SacI GAGCTC 2 cut(s) 54, 1012
SapI GCTCTTC 1 cut(s) 969
SaqAI TTAA 5 cut(s) 393, 483, 531, 588, 848
SatI GCNGC 2 cut(s) 177, 1082
Sau3AI GATC 5 cut(s) 280, 511, 591, 667, 823
Sau96I GGNCC 5 cut(s) 144, 156, 157, 838, 940
ScaI AGTACT 1 cut(s) 751
SchI GAGTC 2 cut(s) 767, 1084
SduI GDGCHC 6 cut(s) 54, 160, 372, 465, 957, 1012
SfaNI GCATC 6 cut(s) 361, 412, 460, 707, 886, 1166
SfcI CTRYAG 2 cut(s) 568, 1082
SfuI TTCGAA 1 cut(s) 920
SinI GGWCC 2 cut(s) 838, 940
SmiMI CAYNNNNRTG 5 cut(s) 20, 254, 468, 686, 1275
SmlI CTYRAG 3 cut(s) 347, 456, 753
SmoI CTYRAG 3 cut(s) 347, 456, 753
SpeI ACTAGT 1 cut(s) 383
Sse9I AATT 8 cut(s) 165, 360, 398, 484, 610, 774, 929, 979
SsiI CCGC 5 cut(s) 176, 254, 836, 1151, 1223
SspMI CTAG 3 cut(s) 384, 509, 1148
SstI GAGCTC 2 cut(s) 54, 1012
TaaI ACNGT 5 cut(s) 441, 547, 560, 572, 745
TaiI ACGT 1 cut(s) 319
TaqI TCGA 4 cut(s) 70, 920, 957, 1274
TasI AATT 8 cut(s) 165, 360, 398, 484, 610, 774, 929, 979
TatI WGTACW 2 cut(s) 749, 985
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 7 cut(s) 41, 105, 127, 271, 377, 917, 1128
Tru1I TTAA 5 cut(s) 393, 483, 531, 588, 848
Tru9I TTAA 5 cut(s) 393, 483, 531, 588, 848
TscAI CASTG 4 cut(s) 33, 256, 577, 1191
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 1 cut(s) 1081
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 7 cut(s) 17, 537, 555, 615, 632, 750, 1225
TspGWI ACGGA 2 cut(s) 129, 417
TspRI CASTG 4 cut(s) 33, 256, 577, 1191
VpaK11BI GGWCC 2 cut(s) 838, 940
XagI CCTNNNNNAGG 1 cut(s) 707
XapI RAATTY 2 cut(s) 360, 979
XbaI TCTAGA 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 848
XmnI GAANNNNTTC 1 cut(s) 963
XspI CTAG 3 cut(s) 384, 509, 1148
ZrmI AGTACT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.