Rmu_sc0002435.1_g000013

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002435.1
OG0001723
Physical Location & Seq
Reverse (-)
54625 .. 56393
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 774 bp
atggccataatacaaacccacttcacgtccaagctcccccaattccccaactccattctcagctccggaaaagacccaactttgaaacccaattttgctcatttcacccgtacaaaacctccacgtttggtcatcagggccgccggaactgattactataagaccctcaacctccacagaaatgccaccttgaaggagataaagacatcttatcgaaagctcgctctacaggttagctttccccttttgtatcatcctgatttgaacaaggactctggagctgaggagaagttcaaagagattactgctgcatatgaggtcctatcagatgatgagaagagaactgcatatgatcgctctggtgatgcaggcttacagggagattatggttcttggacgacaggttcaaccggggtcacttttcagttctatggaacgggtgaatcaggaggcattaacgtcaatgtcaagtccactggaagccagatatatgaaattcggtttaaagaacccattgtaattaaagtttcgtttgctgaggcatttgaaacttgtggtggaagtggagcagaatctaaatctaatgttgaggcatgtgatgcttgtgctgggagtggagctgaatctgataactgcatcaaatcatgtactggttctggaggaacaggaggactcggcactgtgatagctactgccgtgacagtatcaatcattctgtttttgggacttgcagccattattccaggttctagtctttacccttttggcctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

257

Amino Acids

27.35

Weight (kDa)

6.89

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 51 - 118 1.9e-22 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 65
AciI CCGC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 495
AfaI GTAC 2 cut(s) 112, 649
AgsI TTSAA 6 cut(s) 85, 193, 265, 295, 408, 548
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 1 cut(s) 742
AloI GAACNNNNNNTCC 2 cut(s) 388, 420
AluBI AGCT 7 cut(s) 34, 63, 220, 237, 281, 620, 689
AluI AGCT 7 cut(s) 34, 63, 220, 237, 281, 620, 689
Aor13HI TCCGGA 1 cut(s) 65
AoxI GGCC 3 cut(s) 3, 138, 766
ApeKI GCWGC 2 cut(s) 308, 731
ApoI RAATTY 1 cut(s) 495
AspS9I GGNCC 2 cut(s) 138, 319
AsuC2I CCSGG 1 cut(s) 412
AsuHPI GGTGA 3 cut(s) 97, 374, 452
AvaII GGWCC 1 cut(s) 319
BalI TGGCCA 1 cut(s) 5
BbvCI CCTCAGC 2 cut(s) 282, 537
BbvI GCAGC 2 cut(s) 295, 743
BceAI ACGGC 1 cut(s) 680
BciT130I CCWGG 1 cut(s) 744
BcnI CCSGG 1 cut(s) 412
BfaI CTAG 1 cut(s) 750
BfmI CTRYAG 2 cut(s) 227, 770
BisI GCNGC 3 cut(s) 141, 309, 732
BlsI GCNGC 3 cut(s) 142, 310, 733
Bme1390I CCNGG 2 cut(s) 412, 744
Bme18I GGWCC 1 cut(s) 319
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 138, 319
BmrFI CCNGG 2 cut(s) 412, 744
BmsI GCATC 3 cut(s) 355, 589, 645
BpmI CTGGAG 2 cut(s) 297, 678
Bpu10I CCTNAGC 2 cut(s) 282, 537
BpuMI CCSGG 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 411
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bse1I ACTGG 2 cut(s) 481, 655
BseAI TCCGGA 1 cut(s) 65
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 1 cut(s) 253
BseMII CTCAG 3 cut(s) 73, 273, 528
BseNI ACTGG 2 cut(s) 481, 655
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 295, 743
BseYI CCCAGC 1 cut(s) 608
BshFI GGCC 3 cut(s) 5, 140, 768
BsiSI CCGG 3 cut(s) 66, 144, 411
BslFI GGGAC 1 cut(s) 738
BsmFI GGGAC 1 cut(s) 738
BsnI GGCC 3 cut(s) 5, 140, 768
Bsp13I TCCGGA 1 cut(s) 65
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 1 cut(s) 141
BspANI GGCC 3 cut(s) 5, 140, 768
BspCNI CTCAG 3 cut(s) 72, 274, 529
BspEI TCCGGA 1 cut(s) 65
BsrI ACTGG 2 cut(s) 481, 655
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 2 cut(s) 682, 703
Bst6I CTCTTC 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 2 cut(s) 222, 370
BstDEI CTNAG 3 cut(s) 59, 282, 537
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 599
BstNI CCWGG 1 cut(s) 744
BstNSI RCATGY 1 cut(s) 597
BstSCI CCNGG 2 cut(s) 410, 742
BstSFI CTRYAG 2 cut(s) 227, 770
BstV1I GCAGC 2 cut(s) 295, 743
BsuRI GGCC 3 cut(s) 5, 140, 768
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 474, 678
Cac8I GCNNGC 2 cut(s) 222, 370
Cfr13I GGNCC 2 cut(s) 138, 319
Csp6I GTAC 2 cut(s) 111, 648
CviAII CATG 2 cut(s) 594, 645
CviQI GTAC 2 cut(s) 111, 648
DdeI CTNAG 3 cut(s) 59, 282, 537
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
DraI TTTAAA 1 cut(s) 505
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 742
FaeI CATG 2 cut(s) 597, 648
FaqI GGGAC 1 cut(s) 738
FatI CATG 2 cut(s) 593, 644
FauNDI CATATG 2 cut(s) 313, 349
Fnu4HI GCNGC 3 cut(s) 141, 309, 732
FokI GGATG 1 cut(s) 240
Fsp4HI GCNGC 3 cut(s) 141, 309, 732
FspBI CTAG 1 cut(s) 750
GluI GCNGC 3 cut(s) 141, 309, 732
GsaI CCCAGC 1 cut(s) 612
GsuI CTGGAG 2 cut(s) 297, 678
HaeIII GGCC 3 cut(s) 5, 140, 768
HapII CCGG 3 cut(s) 66, 144, 411
Hin1II CATG 2 cut(s) 597, 648
HinfI GANTC 5 cut(s) 272, 443, 572, 623, 672
HpaII CCGG 3 cut(s) 66, 144, 411
HphI GGTGA 3 cut(s) 97, 374, 452
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 2 cut(s) 328, 628
Hpy188III TCNNGA 5 cut(s) 66, 257, 276, 447, 657
Hpy8I GTNNAC 1 cut(s) 474
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 682, 703
HpyCH4IV ACGT 3 cut(s) 26, 124, 459
HpyCH4V TGCA 5 cut(s) 311, 347, 368, 636, 731
HpyF10VI GCNNNNNNNGC 1 cut(s) 599
HpyF3I CTNAG 3 cut(s) 59, 282, 537
HpySE526I ACGT 3 cut(s) 26, 124, 459
Hsp92II CATG 2 cut(s) 597, 648
Kpn2I TCCGGA 1 cut(s) 65
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 5 cut(s) 39, 68, 278, 566, 617
Lsp1109I GCAGC 2 cut(s) 295, 743
LweI GCATC 3 cut(s) 355, 589, 645
MaeI CTAG 1 cut(s) 750
MaeII ACGT 3 cut(s) 26, 124, 459
MaeIII GTNAC 2 cut(s) 415, 697
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 1 cut(s) 349
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 41, 91, 495, 519
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 266, 666
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 456, 504, 522
MslI CAYNNNNRTG 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 66, 144, 411
MspR9I CCNGG 2 cut(s) 412, 744
MvaI CCWGG 1 cut(s) 744
MwoI GCNNNNNNNGC 1 cut(s) 599
NciI CCSGG 1 cut(s) 412
NdeI CATATG 2 cut(s) 313, 349
NdeII GATC 1 cut(s) 352
NlaIII CATG 2 cut(s) 597, 648
NmeAIII GCCGAG 1 cut(s) 654
NmuCI GTSAC 2 cut(s) 415, 697
NspI RCATGY 1 cut(s) 597
PfeI GAWTC 3 cut(s) 443, 572, 623
PkrI GCNGC 3 cut(s) 142, 310, 733
PleI GAGTC 2 cut(s) 266, 666
PpsI GAGTC 2 cut(s) 266, 666
PpuMI RGGWCCY 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 742
PspFI CCCAGC 1 cut(s) 608
PspGI CCWGG 1 cut(s) 742
PspPI GGNCC 2 cut(s) 138, 319
PspPPI RGGWCCY 1 cut(s) 319
RsaI GTAC 2 cut(s) 112, 649
RsaNI GTAC 2 cut(s) 111, 648
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 3 cut(s) 456, 504, 522
SatI GCNGC 3 cut(s) 141, 309, 732
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 2 cut(s) 138, 319
SchI GAGTC 2 cut(s) 266, 666
ScrFI CCNGG 2 cut(s) 412, 744
SfaNI GCATC 3 cut(s) 355, 589, 645
SfcI CTRYAG 2 cut(s) 227, 770
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 4 cut(s) 41, 91, 495, 519
SsiI CCGC 1 cut(s) 141
SspMI CTAG 1 cut(s) 750
StyD4I CCNGG 2 cut(s) 410, 742
TaaI ACNGT 2 cut(s) 682, 703
TaiI ACGT 3 cut(s) 29, 127, 462
TaqI TCGA 1 cut(s) 214
TasI AATT 4 cut(s) 41, 91, 495, 519
TatI WGTACW 1 cut(s) 647
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 3 cut(s) 443, 572, 623
Tru1I TTAA 3 cut(s) 456, 504, 522
Tru9I TTAA 3 cut(s) 456, 504, 522
TscAI CASTG 2 cut(s) 481, 685
TseFI GTSAC 2 cut(s) 415, 697
TseI GCWGC 2 cut(s) 308, 731
Tsp45I GTSAC 2 cut(s) 415, 697
TspDTI ATGAA 1 cut(s) 507
TspRI CASTG 2 cut(s) 481, 685
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 1 cut(s) 495
XceI RCATGY 1 cut(s) 597
XspI CTAG 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.