Rmu_sc0002460.1_g000039

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002460.1
OG0008886
Physical Location & Seq
Forward (+)
152425 .. 152911
487 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
atggcgcgagccaaaacggcagtcaagattcaggaaatcgagcagagagcgacgactgatcaggaggcgagggtgggacggagcacgagcagcccgagaatgaactcgtcggggaaaatagtgttcctaagtttagagcgtagctcgagcagccaaactattggtgaggttggaatgcggtgttttgatggcaatgttcatgatgcagatggtggtgttgatgttgacttgtgttgtgcagagctgctgggcgagagagtgaaggaagagattaacatgtctagaacctggaagaaaatagatgaagagattgaagccattgttatgcctgaggattatcggaataacaatgtttggatcctgtgtaatgattgcaatgacacaactgaagtttacttccacattattggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032102 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0090304 GO:0140096 GO:1900424 GO:1900425 GO:1901360 GO:1901362 GO:1901483 GO:1901485 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

137

Amino Acids

15.38

Weight (kDa)

4.78

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zinc_ribbon_6 PF14599 91 - 137 2.8e-17 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 178
AclWI GGATC 2 cut(s) 352, 365
AcuI CTGAAG 1 cut(s) 408
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 1 cut(s) 314
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 2 cut(s) 144, 244
AluI AGCT 2 cut(s) 144, 244
Alw21I GWGCWC 1 cut(s) 86
AlwI GGATC 2 cut(s) 352, 365
Ama87I CYCGRG 2 cut(s) 94, 145
ApeKI GCWGC 3 cut(s) 90, 150, 244
ArsI GACNNNNNNTTYG 1 cut(s) 38
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 2 cut(s) 94, 145
AxyI CCTNAGG 1 cut(s) 330
BamHI GGATCC 1 cut(s) 357
BauI CACGAG 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 3 cut(s) 102, 162, 231
BccI CCATC 2 cut(s) 182, 203
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 289
BclI TGATCA 1 cut(s) 58
BfaI CTAG 1 cut(s) 282
BglI GCCNNNNNGGC 1 cut(s) 17
BisI GCNGC 3 cut(s) 91, 151, 245
BlsI GCNGC 3 cut(s) 92, 152, 246
Bme1390I CCNGG 1 cut(s) 289
BmeT110I CYCGRG 2 cut(s) 94, 145
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 1 cut(s) 193
BplI GAGNNNNNCTC 2 cut(s) 128, 160
Bse21I CCTNAGG 1 cut(s) 330
Bse3DI GCAATG 2 cut(s) 199, 382
BseBI CCWGG 1 cut(s) 289
BseMI GCAATG 2 cut(s) 199, 382
BseMII CTCAG 1 cut(s) 321
BseXI GCAGC 3 cut(s) 102, 162, 231
BseYI CCCAGC 1 cut(s) 247
BsgI GTGCAG 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 86
BsiHKCI CYCGRG 2 cut(s) 94, 145
BslFI GGGAC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 180
BsoBI CYCGRG 2 cut(s) 94, 145
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 58, 357
BspACI CCGC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 359
BspPI GGATC 2 cut(s) 352, 365
BsrDI GCAATG 2 cut(s) 199, 382
BssMI GATC 2 cut(s) 58, 357
BssSI CACGAG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 289
Bst6I CTCTTC 2 cut(s) 261, 300
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 128, 330
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 61, 360
BstMBI GATC 2 cut(s) 58, 357
BstMWI GCNNNNNNNGC 3 cut(s) 17, 90, 150
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 287
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 3 cut(s) 102, 162, 231
BstX2I RGATCY 1 cut(s) 357
BstXI CCANNNNNNTGG 2 cut(s) 161, 407
BstYI RGATCY 1 cut(s) 357
Bsu36I CCTNAGG 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 9
CciI TCATGA 1 cut(s) 199
CfoI GCGC 1 cut(s) 7
CviAII CATG 2 cut(s) 200, 277
CviJI RGCY 6 cut(s) 11, 93, 144, 153, 244, 317
CviKI_1 RGCY 6 cut(s) 11, 93, 144, 153, 244, 317
DdeI CTNAG 2 cut(s) 128, 330
DpnI GATC 2 cut(s) 60, 359
DpnII GATC 2 cut(s) 58, 357
Eam1104I CTCTTC 2 cut(s) 261, 300
EarI CTCTTC 2 cut(s) 261, 300
Eco57I CTGAAG 1 cut(s) 408
Eco81I CCTNAGG 1 cut(s) 330
Eco88I CYCGRG 2 cut(s) 94, 145
EcoRII CCWGG 1 cut(s) 287
FaeI CATG 2 cut(s) 203, 280
FaiI YATR 3 cut(s) 201, 278, 326
FaqI GGGAC 1 cut(s) 90
FatI CATG 2 cut(s) 199, 276
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 3 cut(s) 91, 151, 245
Fsp4HI GCNGC 3 cut(s) 91, 151, 245
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 91, 151, 245
GsaI CCCAGC 1 cut(s) 251
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 203, 280
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 1 cut(s) 28
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 2 cut(s) 226, 394
Hpy188I TCNGA 1 cut(s) 342
Hpy188III TCNNGA 5 cut(s) 25, 32, 62, 200, 282
Hpy8I GTNNAC 2 cut(s) 226, 394
Hpy99I CGWCG 2 cut(s) 55, 112
HpyAV CCTTC 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 206, 239, 375
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 90, 150
HpyF3I CTNAG 2 cut(s) 128, 330
Hsp92II CATG 2 cut(s) 203, 280
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 58, 357
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 7 cut(s) 17, 47, 233, 274, 301, 342, 374
Lsp1109I GCAGC 3 cut(s) 102, 162, 231
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 282
MalI GATC 2 cut(s) 60, 359
MboI GATC 2 cut(s) 58, 357
MboII GAAGA 3 cut(s) 278, 304, 317
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 4 cut(s) 58, 63, 160, 325
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 289
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 17, 90, 150
NdeII GATC 2 cut(s) 58, 357
NlaIII CATG 2 cut(s) 203, 280
NlaIV GGNNCC 1 cut(s) 359
NspI RCATGY 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 145
PagI TCATGA 1 cut(s) 199
PciI ACATGT 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PctI GAATGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 3 cut(s) 92, 152, 246
PscI ACATGT 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 247
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 359
PspXI VCTCGAGB 1 cut(s) 145
PsuI RGATCY 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 3 cut(s) 91, 151, 245
Sau3AI GATC 2 cut(s) 58, 357
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 86
SetI ASST 4 cut(s) 146, 171, 246, 290
SfaNI GCATC 1 cut(s) 193
Sfr274I CTCGAG 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SsiI CCGC 1 cut(s) 178
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 287
TaqI TCGA 2 cut(s) 39, 146
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TseI GCWGC 3 cut(s) 90, 150, 244
TspDTI ATGAA 3 cut(s) 116, 188, 318
TspGWI ACGGA 1 cut(s) 94
XbaI TCTAGA 1 cut(s) 281
XceI RCATGY 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 145
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.