Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002606.1

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Forward (+)

32532 .. 35544

Gene Structure 3013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgctgtcagatgatgtcacctccagactgtttcatttgcatcggtctctttttgttccttatttcaaatacttgctggagaattgtgtacattatcttactgtctctggagatgcaaagccttctggtttaacccgaaagaagaaggccaagattcaggaatccgataacagcatgttccttggaaactggcatcttagagcgctggtcttatcatcattacataaatgttttctctatgatacgggaagcatgaagtttcttgattcttccaattttcaggttctactgaagcccattgtttcccagcttgttatagaacctccagtttctctagaggagcattctgacattccgtctgtgaaagaagttgatgaattattggttgtttgtgttggtcaaatggctgtgactgcaggaagtgatcttctatggaagcccttgaattatgaggtgctgatgcagacacgcagtgacaaggtccgtgcaagaattttgggcctgagtattattaaatatcttgtggagcatctaagagaagaatatctggtatttgttccagaaacagttcccttctttgctgagttgcttgaggatgtcgagccttctgttaaatctctggcacaagaaatcttcaacgaactgagcaccatgactggtgaagacctctcacagtatatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

227

Amino Acids

25.87

Weight (kDa)

5.38

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BP28CT	PF08146	7 - 84	9.5e-11	BP28CT (NUC211) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	311
AdeI	CACNNNGTG	1 cut(s)	473
AfaI	GTAC	1 cut(s)	90
AfeI	AGCGCT	1 cut(s)	204
AgsI	TTSAA	3 cut(s)	67, 445, 637
AhdI	GACNNNNNGTC	1 cut(s)	355
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
Alw21I	GWGCWC	1 cut(s)	650
Alw26I	GTCTC	2 cut(s)	51, 109
Aor51HI	AGCGCT	1 cut(s)	204
AoxI	GGCC	2 cut(s)	147, 499
ApoI	RAATTY	1 cut(s)	492
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	2 cut(s)	481, 499
AsuHPI	GGTGA	2 cut(s)	10, 671
AvaII	GGWCC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	650
BcoDI	GTCTC	2 cut(s)	51, 109
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	481
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	481, 499
BmsI	GCATC	5 cut(s)	49, 103, 202, 450, 538
BpiI	GAAGAC	1 cut(s)	669
BpmI	CTGGAG	4 cut(s)	7, 98, 129, 309
BpuEI	CTTGAG	1 cut(s)	611
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	181
Bse1I	ACTGG	3 cut(s)	194, 326, 661
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	601
BseMII	CTCAG	3 cut(s)	494, 573, 635
BseNI	ACTGG	3 cut(s)	194, 326, 661
BseRI	GAGGAG	1 cut(s)	353
BseYI	CCCAGC	1 cut(s)	306
BshFI	GGCC	2 cut(s)	149, 501
BsiHKAI	GWGCWC	1 cut(s)	650
BsmAI	GTCTC	2 cut(s)	51, 109
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	149, 501
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	650
Bsp1407I	TGTACA	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	424
BspANI	GGCC	2 cut(s)	149, 501
BspCNI	CTCAG	3 cut(s)	495, 574, 636
BspMAI	CTGCAG	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	88
BsrI	ACTGG	3 cut(s)	194, 326, 661
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	424
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	4 cut(s)	30, 103, 568, 675
BstAUI	TGTACA	1 cut(s)	88
BstDEI	CTNAG	5 cut(s)	197, 503, 533, 582, 644
BstF5I	GGATG	1 cut(s)	601
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	2 cut(s)	51, 109
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNSI	RCATGY	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	414
BstV2I	GAAGAC	1 cut(s)	669
BsuRI	GGCC	2 cut(s)	149, 501
BtsCI	GGATG	1 cut(s)	601
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	478
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	481, 499
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	3 cut(s)	175, 253, 652
CviJI	RGCY	8 cut(s)	121, 149, 295, 310, 407, 439, 501, 604
CviKI_1	RGCY	8 cut(s)	121, 149, 295, 310, 407, 439, 501, 604
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	5 cut(s)	197, 503, 533, 582, 644
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
DraIII	CACNNNGTG	1 cut(s)	473
DriI	GACNNNNNGTC	1 cut(s)	355
Eam1105I	GACNNNNNGTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	481
Eco47III	AGCGCT	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	178, 256, 655
FaiI	YATR	9 cut(s)	176, 225, 240, 254, 317, 433, 450, 653, 678
FatI	CATG	3 cut(s)	174, 252, 651
FokI	GGATG	1 cut(s)	608
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	204
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	4 cut(s)	7, 98, 129, 309
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	149, 501
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	3 cut(s)	178, 256, 655
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	3 cut(s)	154, 161, 266
HphI	GGTGA	2 cut(s)	10, 671
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	4 cut(s)	10, 166, 349, 683
Hpy188III	TCNNGA	6 cut(s)	24, 108, 158, 263, 335, 560
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	132, 139, 583, 615
HpyCH4III	ACNGT	4 cut(s)	30, 103, 568, 675
HpyCH4V	TGCA	5 cut(s)	40, 116, 416, 463, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	5 cut(s)	197, 503, 533, 582, 644
Hsp92II	CATG	3 cut(s)	178, 256, 655
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	2 cut(s)	340, 526
LweI	GCATC	5 cut(s)	49, 103, 202, 450, 538
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	3 cut(s)	16, 409, 473
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	6 cut(s)	154, 261, 419, 551, 625, 674
MhlI	GDGCHC	1 cut(s)	650
MluCI	AATT	5 cut(s)	82, 274, 377, 445, 492
MnlI	CCTC	6 cut(s)	31, 331, 333, 445, 586, 677
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	3 cut(s)	131, 513, 612
Mva1269I	GAATGC	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	3 cut(s)	178, 256, 655
NmuCI	GTSAC	3 cut(s)	16, 409, 473
NspI	RCATGY	1 cut(s)	178
PctI	GAATGC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	154, 161, 266
PflFI	GACNNNGTC	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	481, 499
PstI	CTGCAG	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	479
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	131, 513, 612
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	2 cut(s)	481, 499
SduI	GDGCHC	1 cut(s)	650
SetI	ASST	7 cut(s)	23, 285, 312, 325, 456, 483, 669
SfaNI	GCATC	5 cut(s)	49, 103, 202, 450, 538
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	5 cut(s)	82, 274, 377, 445, 492
SspMI	CTAG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	4 cut(s)	30, 103, 568, 675
TaqI	TCGA	1 cut(s)	600
TaqII	GACCGA	1 cut(s)	33
TasI	AATT	5 cut(s)	82, 274, 377, 445, 492
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	3 cut(s)	154, 161, 266
Tru1I	TTAA	3 cut(s)	131, 513, 612
Tru9I	TTAA	3 cut(s)	131, 513, 612
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	3 cut(s)	16, 409, 473
Tsp45I	GTSAC	3 cut(s)	16, 409, 473
TspDTI	ATGAA	3 cut(s)	23, 269, 390
TspGWI	ACGGA	2 cut(s)	345, 473
TspRI	CASTG	1 cut(s)	478
Tth111I	GACNNNGTC	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	1 cut(s)	492
XbaI	TCTAGA	1 cut(s)	334
XceI	RCATGY	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.