Rmu_sc0002766.1_g000019

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002766.1
OG0005314
Physical Location & Seq
Forward (+)
77783 .. 81971
4189 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ctgttttctttgcccaagtccgcgatttctcagcttctatcggtatctttgttaatggcggacgaggaacctgttgatcagaagaagtaccttgaagactcctgcaagccgaaatgtgtcaaaccatttctccaatatcaggcatgtgttaagaggatcgaaggtgacgaaagcggccacaagcattgtactggacaatattttgactactggtcttgtgtagacaaatgtgttgcaccaaagctctttactaagctgaagtga

Protein Analysis

87

Amino Acids

9.93

Weight (kDa)

8.24

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_hinge PF02320 26 - 87 3.7e-22 Ubiquinol-cytochrome C reductase hinge protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 222
AccII CGCG 1 cut(s) 23
AciI CCGC 3 cut(s) 21, 59, 174
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 175
AfaI GTAC 2 cut(s) 89, 190
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 95
AhdI GACNNNNNGTC 1 cut(s) 211
AluBI AGCT 3 cut(s) 34, 244, 256
AluI AGCT 3 cut(s) 34, 244, 256
AlwI GGATC 1 cut(s) 164
AoxI GGCC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 102
BclI TGATCA 1 cut(s) 76
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
BmeRI GACNNNNNGTC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 2 cut(s) 196, 215
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 2 cut(s) 196, 215
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 139
BsnI GGCC 1 cut(s) 177
Bsp143I GATC 2 cut(s) 76, 156
BspACI CCGC 3 cut(s) 21, 59, 174
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 164
BsrI ACTGG 2 cut(s) 196, 215
BssMI GATC 2 cut(s) 76, 156
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 30, 252
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 2 cut(s) 79, 159
BstMBI GATC 2 cut(s) 76, 156
BstNSI RCATGY 1 cut(s) 147
BstUI CGCG 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 88, 189
CspCI CAANNNNNGTGG 2 cut(s) 167, 202
CviAII CATG 1 cut(s) 144
CviJI RGCY 5 cut(s) 34, 109, 177, 244, 256
CviKI_1 RGCY 5 cut(s) 34, 109, 177, 244, 256
CviQI GTAC 2 cut(s) 88, 189
DdeI CTNAG 2 cut(s) 30, 252
DpnI GATC 2 cut(s) 78, 158
DpnII GATC 2 cut(s) 76, 156
DriI GACNNNNNGTC 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 175
Eam1105I GACNNNNNGTC 1 cut(s) 211
EciI GGCGGA 1 cut(s) 74
FaeI CATG 1 cut(s) 147
FaiI YATR 1 cut(s) 145
FatI CATG 1 cut(s) 143
FbaI TGATCA 1 cut(s) 76
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 175
HaeIII GGCC 1 cut(s) 177
Hin1II CATG 1 cut(s) 147
HinfI GANTC 1 cut(s) 98
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 105, 236
HpyF3I CTNAG 2 cut(s) 30, 252
Hsp92II CATG 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 2 cut(s) 76, 156
LpnPI CCDG 5 cut(s) 84, 115, 125, 177, 196
MaeIII GTNAC 1 cut(s) 164
MalI GATC 2 cut(s) 78, 158
MboI GATC 2 cut(s) 76, 156
MboII GAAGA 2 cut(s) 94, 107
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 2 cut(s) 58, 147
MseI TTAA 2 cut(s) 53, 150
MvnI CGCG 1 cut(s) 23
NdeII GATC 2 cut(s) 76, 156
NlaIII CATG 1 cut(s) 147
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 164
NspI RCATGY 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PkrI GCNGC 1 cut(s) 176
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 69
RsaI GTAC 2 cut(s) 89, 190
RsaNI GTAC 2 cut(s) 88, 189
SaqAI TTAA 2 cut(s) 53, 150
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 2 cut(s) 76, 156
SchI GAGTC 1 cut(s) 92
SetI ASST 6 cut(s) 36, 73, 93, 166, 246, 258
SsiI CCGC 3 cut(s) 21, 59, 174
SspI AATATT 1 cut(s) 200
TaqI TCGA 1 cut(s) 159
TatI WGTACW 1 cut(s) 188
TauI GCSGC 1 cut(s) 177
Tru1I TTAA 2 cut(s) 53, 150
Tru9I TTAA 2 cut(s) 53, 150
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
XceI RCATGY 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.