Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002933.1

Orthogroup ID

OG0011621

Physical Location & Seq

Genomic Coordinates Reverse (-)

51514 .. 52059

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002933.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgctgtatccgatcaatatttcacgggcggccgaaacaccaacactaccacaagtagtaccagcagcgccgccaacatgcaatccaccaagaaagcaacagctggcggccatttccgactggttcgtcaccgagaaaaagcacaacaccaacaagcggagatccaaacccagccgagtgaggagcacgagatcgtcgctgtcgtcgttctcctgccacgttcccgacgaggatcgcgagctccttctcccacctgaggccgtcgatgtgtcgtcagcggtgctggatatgatgtcgttcaaggctgacatgagcgttgaccggcaggtgtcgctaccgagggtgtcgagcgggagtagctacgtcgggagcttgtactctgggatgacgaccctggacaggaacttctccggcgacgtcaaggactcgtcagcgacgacgaggccggtggaggaagaggaggaggaggaggtggtgggagtgggagtggaggcgagtagggatagcttggcgcagaggaacggggtggaggcgcctagcgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EDR1 Pkinase_Tyr

Protein Analysis

181

Amino Acids

19.7

Weight (kDa)

5.29

Isoelectric Point (pI)

71.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011621)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000868
rosa_multiflora	Rmu_sc0002933.1_g000011 Rmu_sc0003707.1_g000002 Rmu_sc0004180.1_g000020 Rmu_sc0008558.1_g000002 Rmu_sc0030499.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057770 Rroxscaffold_4G00303260 Rroxscaffold_4G00323430
rosa_rugosa	Rorug02G0301700
rosa_samantha	Rh2AG433000 Rh2AG531900 Rh2CG367300 Rh3AG285900 Rh3AG292900 Rh4AG110800 Rh7AG458200
rosa_wichuraiana	Rw3G023850 Rw3G029550 Rw4G003450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
AasI	GACNNNNNNGTC	1 cut(s)	125
AatII	GACGTC	1 cut(s)	420
Acc36I	ACCTGC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	532
AccBSI	CCGCTC	1 cut(s)	351
AccII	CGCG	1 cut(s)	237
AciI	CCGC	6 cut(s)	29, 71, 107, 157, 278, 351
AclWI	GGATC	2 cut(s)	156, 240
AcoI	YGGCCR	2 cut(s)	30, 108
AcyI	GRCGYC	2 cut(s)	417, 533
AfaI	GTAC	2 cut(s)	60, 377
AfiI	CCNNNNNNNGG	3 cut(s)	156, 256, 399
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	5 cut(s)	103, 241, 360, 372, 507
AluI	AGCT	5 cut(s)	103, 241, 360, 372, 507
Alw21I	GWGCWC	2 cut(s)	188, 243
AlwI	GGATC	2 cut(s)	156, 240
AoxI	GGCC	4 cut(s)	30, 108, 258, 443
ApeKI	GCWGC	1 cut(s)	65
AspLEI	GCGC	4 cut(s)	70, 514, 535, 542
AsuHPI	GGTGA	1 cut(s)	121
AxyI	CCTNAGG	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	187
Bbv12I	GWGCWC	2 cut(s)	188, 243
BbvI	GCAGC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	395
BciVI	GTATCC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	537, 544
BfoI	RGCGCY	3 cut(s)	71, 536, 543
BfuAI	ACCTGC	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	4 cut(s)	30, 66, 71, 108
BlsI	GCNGC	4 cut(s)	31, 67, 72, 109
Bme1390I	CCNGG	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	1 cut(s)	395
BsaHI	GRCGYC	2 cut(s)	417, 533
BsaJI	CCNNGG	2 cut(s)	338, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 256, 399
Bse118I	RCCGGY	2 cut(s)	321, 445
Bse1I	ACTGG	1 cut(s)	125
Bse21I	CCTNAGG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	338, 393
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	3 cut(s)	156, 256, 399
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	5 cut(s)	196, 473, 476, 479, 482
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	77
BseYI	CCCAGC	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	4 cut(s)	32, 110, 260, 445
BshNI	GGYRCC	1 cut(s)	532
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	2 cut(s)	188, 243
BsiSI	CCGG	3 cut(s)	322, 411, 446
BslI	CCNNNNNNNGG	3 cut(s)	156, 256, 399
BsnI	GGCC	4 cut(s)	32, 110, 260, 445
Bsp1286I	GDGCHC	2 cut(s)	188, 243
Bsp143I	GATC	4 cut(s)	12, 161, 191, 232
Bsp68I	TCGCGA	1 cut(s)	237
BspACI	CCGC	6 cut(s)	29, 71, 107, 157, 278, 351
BspANI	GGCC	4 cut(s)	32, 110, 260, 445
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	534
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	2 cut(s)	156, 240
BspT107I	GGYRCC	1 cut(s)	532
BsrBI	CCGCTC	1 cut(s)	351
BsrFI	RCCGGY	2 cut(s)	321, 445
BsrI	ACTGG	1 cut(s)	125
BssAI	RCCGGY	2 cut(s)	321, 445
BssECI	CCNNGG	2 cut(s)	338, 393
BssMI	GATC	4 cut(s)	12, 161, 191, 232
BssNI	GRCGYC	2 cut(s)	417, 533
BssSI	CACGAG	1 cut(s)	187
Bst2BI	CACGAG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	395
Bst6I	CTCTTC	1 cut(s)	450
BstACI	GRCGYC	2 cut(s)	417, 533
BstC8I	GCNNGC	2 cut(s)	105, 239
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	3 cut(s)	71, 536, 543
BstHHI	GCGC	4 cut(s)	70, 514, 535, 542
BstKTI	GATC	4 cut(s)	15, 164, 194, 235
BstMBI	GATC	4 cut(s)	12, 161, 191, 232
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 357, 539
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	393
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BstZI	CGGCCG	1 cut(s)	30
Bsu36I	CCTNAGG	1 cut(s)	255
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	32, 110, 260, 445
BtsCI	GGATG	1 cut(s)	390
BtuMI	TCGCGA	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	105, 239
CfoI	GCGC	4 cut(s)	70, 514, 535, 542
Cfr10I	RCCGGY	2 cut(s)	321, 445
Csp6I	GTAC	2 cut(s)	59, 376
CviAII	CATG	2 cut(s)	78, 310
CviQI	GTAC	2 cut(s)	59, 376
DdeI	CTNAG	1 cut(s)	255
DinI	GGCGCC	1 cut(s)	534
DpnI	GATC	4 cut(s)	14, 163, 193, 234
DpnII	GATC	4 cut(s)	12, 161, 191, 232
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	2 cut(s)	30, 108
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Ecl136II	GAGCTC	1 cut(s)	241
EclXI	CGGCCG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	243
Eco52I	CGGCCG	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	241
Eco81I	CCTNAGG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	243
EgeI	GGCGCC	1 cut(s)	534
EheI	GGCGCC	1 cut(s)	534
FaeI	CATG	2 cut(s)	81, 313
FaiI	YATR	3 cut(s)	79, 290, 311
FatI	CATG	2 cut(s)	77, 309
FauI	CCCGC	1 cut(s)	344
Fnu4HI	GCNGC	4 cut(s)	30, 66, 71, 108
FokI	GGATG	1 cut(s)	397
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	4 cut(s)	30, 66, 71, 108
FspBI	CTAG	2 cut(s)	537, 544
GlaI	GCGC	4 cut(s)	69, 513, 534, 541
GluI	GCNGC	4 cut(s)	30, 66, 71, 108
GsaI	CCCAGC	1 cut(s)	174
HaeII	RGCGCY	3 cut(s)	71, 536, 543
HaeIII	GGCC	4 cut(s)	32, 110, 260, 445
HapII	CCGG	3 cut(s)	322, 411, 446
HhaI	GCGC	4 cut(s)	70, 514, 535, 542
Hin1I	GRCGYC	2 cut(s)	417, 533
Hin1II	CATG	2 cut(s)	81, 313
Hin6I	GCGC	4 cut(s)	68, 512, 533, 540
HinP1I	GCGC	4 cut(s)	68, 512, 533, 540
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	3 cut(s)	322, 411, 446
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	12, 118
Hpy188III	TCNNGA	3 cut(s)	224, 236, 367
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	8 cut(s)	199, 208, 230, 266, 368, 419, 439, 442
HpyAV	CCTTC	1 cut(s)	254
HpyCH4IV	ACGT	3 cut(s)	219, 363, 417
HpyCH4V	TGCA	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 357, 539
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	3 cut(s)	219, 363, 417
Hsp92I	GRCGYC	2 cut(s)	417, 533
Hsp92II	CATG	2 cut(s)	81, 313
HspAI	GCGC	4 cut(s)	68, 512, 533, 540
KasI	GGCGCC	1 cut(s)	532
Kzo9I	GATC	4 cut(s)	12, 161, 191, 232
LmnI	GCTCC	3 cut(s)	183, 246, 369
Lsp1109I	GCAGC	1 cut(s)	77
MaeI	CTAG	2 cut(s)	537, 544
MaeII	ACGT	3 cut(s)	219, 363, 417
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	4 cut(s)	14, 163, 193, 234
MbiI	CCGCTC	1 cut(s)	351
MboI	GATC	4 cut(s)	12, 161, 191, 232
MboII	GAAGA	1 cut(s)	467
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	2 cut(s)	188, 243
Mly113I	GGCGCC	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	141
MspA1I	CMGCKG	2 cut(s)	103, 278
MspI	CCGG	3 cut(s)	322, 411, 446
MspR9I	CCNGG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	331, 357, 539
NarI	GGCGCC	1 cut(s)	533
NdeII	GATC	4 cut(s)	12, 161, 191, 232
NlaIII	CATG	2 cut(s)	81, 313
NlaIV	GGNNCC	1 cut(s)	534
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	127
NruI	TCGCGA	1 cut(s)	237
NspI	RCATGY	1 cut(s)	81
PaqCI	CACCTGC	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	5 cut(s)	200, 203, 225, 234, 434
PkrI	GCNGC	4 cut(s)	31, 67, 72, 109
PleI	GAGTC	1 cut(s)	419
PluTI	GGCGCC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	393
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	534
PsuI	RGATCY	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	103
RruI	TCGCGA	1 cut(s)	237
RsaI	GTAC	2 cut(s)	60, 377
RsaNI	GTAC	2 cut(s)	59, 376
SacI	GAGCTC	1 cut(s)	243
SatI	GCNGC	4 cut(s)	30, 66, 71, 108
Sau3AI	GATC	4 cut(s)	12, 161, 191, 232
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	2 cut(s)	188, 243
SfoI	GGCGCC	1 cut(s)	534
SsiI	CCGC	6 cut(s)	29, 71, 107, 157, 278, 351
SspDI	GGCGCC	1 cut(s)	532
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	2 cut(s)	537, 544
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	393
TaiI	ACGT	3 cut(s)	222, 366, 420
TaqI	TCGA	2 cut(s)	264, 347
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	3 cut(s)	32, 73, 110
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	127
XceI	RCATGY	1 cut(s)	81
XspI	CTAG	2 cut(s)	537, 544
ZraI	GACGTC	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.