Rroxscaffold_1G00057770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011621
Physical Location & Seq
Forward (+)
79751388 .. 79772298
20911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057770.1

Sequence Viewer

Length: 717 bp
ATGAAGGATCCAAGCAGTAATTGGCCTTCCTATTCTTCTGCTGATTTCCAAAATATGACGCCCTTGACGTTTATGAAAAGTGATCTCTACGCATTCATCAGTGAAGCCGGTCGCGAGAGTAGGGCGTGGGGCGGCCTCGAGGTCCACGTAGCGCGGTGGTTTTGTCGGAGTTTTCTTGCGGGTTCGGCGGTTTGTGGTGTCTTGGGGGTCGATCTCACAAGGAAAGGGAGGAGGACAGCCGGAGATGTCGTCGCTTGGTGGTGCGAAAATGGGTTACGAGCGGCACGGATTGGACCGGAGATCTCCGATCTGGTTGGTGTTGTCGGAGCTGTAGTATGGAGAGGGCGGTTTCTTTCGGTTCGGATCGGATCGGAGTGTTCCGATCTGGTTTGGATTGGTTGGAGCCTTCCGGTGGGGGGTGTAGGTGGATGGGGCGGCGATGCTTTCGGGCATGGTGGGGAGATCGACCGAGTGGAAGGGCGGGCAGCGTGTGTTCGGTGCGGTGGGTGTGCGCCTACGGTGGAACGCCGAAGGCTGCTTGGTGTGGTCGCATGTCCGCGGTGGGTGGACTGCGCCGTTTGCTCTTGCGGATCGTGGCGCGATGCTTGCGGCGGTGTTCTCTTCGATTGGGCTAAGTGGGGTTTGGGCACGGGCTTGGGCTACGGGCCCAATTTCCCTTTATTTTGTGTTTTATTGTTTTTGGTTTTTATTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

25.62

Weight (kDa)

8.24

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 137
AccBSI CCGCTC 1 cut(s) 281
AccII CGCG 4 cut(s) 114, 154, 559, 600
AclWI GGATC 5 cut(s) 2, 15, 371, 376, 598
AcyI GRCGYC 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 412, 416
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
AlwI GGATC 5 cut(s) 2, 15, 371, 376, 598
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 3 cut(s) 23, 133, 665
ApaI GGGCCC 1 cut(s) 669
ApeKI GCWGC 2 cut(s) 485, 535
AspLEI GCGC 4 cut(s) 154, 514, 575, 600
AspS9I GGNCC 4 cut(s) 142, 293, 665, 666
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 2 cut(s) 142, 293
BaeGI GKGCMC 2 cut(s) 650, 669
BamHI GGATCC 1 cut(s) 7
BanII GRGCYC 1 cut(s) 669
BarI GAAGNNNNNNTAC 2 cut(s) 10, 42
BbvI GCAGC 2 cut(s) 497, 522
BccI CCATC 1 cut(s) 423
BceAI ACGGC 1 cut(s) 560
BfmI CTRYAG 1 cut(s) 330
BglII AGATCT 1 cut(s) 300
BisI GCNGC 6 cut(s) 133, 282, 436, 486, 536, 610
BlsI GCNGC 6 cut(s) 134, 283, 437, 487, 537, 611
Bme18I GGWCC 2 cut(s) 142, 293
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 4 cut(s) 142, 293, 665, 666
BmiI GGNNCC 3 cut(s) 9, 404, 667
BmsI GCATC 2 cut(s) 430, 592
BsaAI YACGTR 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 557
BsaWI WCCGGW 2 cut(s) 295, 409
BsaXI ACNNNNNCTCC 4 cut(s) 234, 264, 318, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 416
Bse118I RCCGGY 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 557
BseGI GGATG 1 cut(s) 434
BseLI CCNNNNNNNGG 2 cut(s) 412, 416
BseRI GAGGAG 1 cut(s) 244
BseSI GKGCMC 2 cut(s) 650, 669
BseXI GCAGC 2 cut(s) 497, 522
Bsh1236I CGCG 4 cut(s) 114, 154, 559, 600
Bsh1285I CGRYCG 2 cut(s) 112, 469
BshFI GGCC 3 cut(s) 25, 135, 667
BsiEI CGRYCG 2 cut(s) 112, 469
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 4 cut(s) 108, 240, 296, 410
BslI CCNNNNNNNGG 2 cut(s) 412, 416
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 3 cut(s) 25, 135, 667
BsoBI CYCGRG 1 cut(s) 137
Bsp120I GGGCCC 1 cut(s) 665
Bsp1286I GDGCHC 2 cut(s) 650, 669
Bsp68I TCGCGA 1 cut(s) 114
BspANI GGCC 3 cut(s) 25, 135, 667
BspFNI CGCG 4 cut(s) 114, 154, 559, 600
BspLI GGNNCC 3 cut(s) 9, 404, 667
BspPI GGATC 5 cut(s) 2, 15, 371, 376, 598
BsrBI CCGCTC 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 557
BssNI GRCGYC 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 1 cut(s) 626
BstACI GRCGYC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 483, 607
BstDEI CTNAG 1 cut(s) 633
BstDSI CCRYGG 1 cut(s) 557
BstF5I GGATG 1 cut(s) 434
BstFNI CGCG 4 cut(s) 114, 154, 559, 600
BstHHI GCGC 4 cut(s) 154, 514, 575, 600
BstMCI CGRYCG 2 cut(s) 112, 469
BstMWI GCNNNNNNNGC 3 cut(s) 185, 579, 606
BstNSI RCATGY 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 330
BstSLI GKGCMC 2 cut(s) 650, 669
BstUI CGCG 4 cut(s) 114, 154, 559, 600
BstV1I GCAGC 2 cut(s) 497, 522
BstX2I RGATCY 2 cut(s) 7, 300
BstYI RGATCY 2 cut(s) 7, 300
BsuRI GGCC 3 cut(s) 25, 135, 667
BtgI CCRYGG 1 cut(s) 557
BtgZI GCGATG 2 cut(s) 453, 615
BtsCI GGATG 1 cut(s) 434
BtsIMutI CAGTG 1 cut(s) 106
BtuMI TCGCGA 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 483, 607
CfoI GCGC 4 cut(s) 154, 514, 575, 600
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 4 cut(s) 142, 293, 665, 666
Cfr42I CCGCGG 1 cut(s) 560
CseI GACGC 1 cut(s) 67
CviAII CATG 2 cut(s) 452, 552
DdeI CTNAG 1 cut(s) 633
Eam1104I CTCTTC 1 cut(s) 626
EarI CTCTTC 1 cut(s) 626
Eco24I GRGCYC 1 cut(s) 669
Eco47I GGWCC 2 cut(s) 142, 293
Eco88I CYCGRG 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 669
FaeI CATG 2 cut(s) 455, 555
FaiI YATR 5 cut(s) 56, 74, 337, 453, 553
FatI CATG 2 cut(s) 451, 551
FauI CCCGC 2 cut(s) 172, 474
Fnu4HI GCNGC 6 cut(s) 133, 282, 436, 486, 536, 610
FokI GGATG 1 cut(s) 441
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 6 cut(s) 133, 282, 436, 486, 536, 610
GlaI GCGC 4 cut(s) 153, 513, 574, 599
GluI GCNGC 6 cut(s) 133, 282, 436, 486, 536, 610
HaeIII GGCC 3 cut(s) 25, 135, 667
HapII CCGG 4 cut(s) 108, 240, 296, 410
HgaI GACGC 1 cut(s) 67
HhaI GCGC 4 cut(s) 154, 514, 575, 600
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 2 cut(s) 455, 555
Hin6I GCGC 4 cut(s) 152, 512, 573, 598
HinP1I GCGC 4 cut(s) 152, 512, 573, 598
HpaII CCGG 4 cut(s) 108, 240, 296, 410
Hpy166II GTNNAC 2 cut(s) 145, 568
Hpy188I TCNGA 7 cut(s) 168, 307, 326, 363, 368, 373, 382
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 2 cut(s) 145, 568
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 4 cut(s) 36, 416, 470, 525
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 2 cut(s) 68, 147
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 579, 606
HpyF3I CTNAG 1 cut(s) 633
HpySE526I ACGT 2 cut(s) 68, 147
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 2 cut(s) 455, 555
HspAI GCGC 4 cut(s) 152, 512, 573, 598
KspI CCGCGG 1 cut(s) 560
LmnI GCTCC 2 cut(s) 326, 402
LpnPI CCDG 6 cut(s) 121, 253, 296, 309, 371, 423
Lsp1109I GCAGC 2 cut(s) 497, 522
LweI GCATC 2 cut(s) 430, 592
MaeII ACGT 2 cut(s) 68, 147
MaeIII GTNAC 1 cut(s) 273
MbiI CCGCTC 1 cut(s) 281
MboII GAAGA 2 cut(s) 27, 613
MflI RGATCY 2 cut(s) 7, 300
MhlI GDGCHC 2 cut(s) 650, 669
MluCI AATT 2 cut(s) 19, 670
MmeI TCCRAC 3 cut(s) 146, 304, 380
MnlI CCTC 5 cut(s) 133, 146, 222, 225, 335
MseI TTAA 1 cut(s) 715
MspA1I CMGCKG 1 cut(s) 559
MspI CCGG 4 cut(s) 108, 240, 296, 410
Mva1269I GAATGC 1 cut(s) 92
MvnI CGCG 4 cut(s) 114, 154, 559, 600
MwoI GCNNNNNNNGC 3 cut(s) 185, 579, 606
NlaIII CATG 2 cut(s) 455, 555
NlaIV GGNNCC 3 cut(s) 9, 404, 667
NruI TCGCGA 1 cut(s) 114
NspI RCATGY 1 cut(s) 555
PaeR7I CTCGAG 1 cut(s) 137
PcsI WCGNNNNNNNCGW 2 cut(s) 65, 144
PctI GAATGC 1 cut(s) 92
PkrI GCNGC 6 cut(s) 134, 283, 437, 487, 537, 611
Ppu21I YACGTR 1 cut(s) 148
PspN4I GGNNCC 3 cut(s) 9, 404, 667
PspOMI GGGCCC 1 cut(s) 665
PspPI GGNCC 4 cut(s) 142, 293, 665, 666
PspXI VCTCGAGB 1 cut(s) 137
PsuI RGATCY 2 cut(s) 7, 300
RruI TCGCGA 1 cut(s) 114
SacII CCGCGG 1 cut(s) 560
SaqAI TTAA 1 cut(s) 715
SatI GCNGC 6 cut(s) 133, 282, 436, 486, 536, 610
Sau96I GGNCC 4 cut(s) 142, 293, 665, 666
SduI GDGCHC 2 cut(s) 650, 669
SetI ASST 5 cut(s) 71, 144, 150, 331, 427
SfaNI GCATC 2 cut(s) 430, 592
SfcI CTRYAG 1 cut(s) 330
Sfr274I CTCGAG 1 cut(s) 137
Sfr303I CCGCGG 1 cut(s) 560
SgrBI CCGCGG 1 cut(s) 560
SinI GGWCC 2 cut(s) 142, 293
SlaI CTCGAG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 2 cut(s) 19, 670
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 2 cut(s) 71, 150
TaqI TCGA 4 cut(s) 138, 210, 465, 624
TaqII GACCGA 1 cut(s) 483
TasI AATT 2 cut(s) 19, 670
TauI GCSGC 4 cut(s) 135, 284, 438, 612
Tru1I TTAA 1 cut(s) 715
Tru9I TTAA 1 cut(s) 715
TscAI CASTG 1 cut(s) 106
TseI GCWGC 2 cut(s) 485, 535
TspDTI ATGAA 3 cut(s) 17, 85, 89
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 2 cut(s) 142, 293
XceI RCATGY 1 cut(s) 555
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XhoI CTCGAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.