Rorug02G0301700

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011621
Physical Location & Seq
Reverse (-)
33692543 .. 33693256
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0301700.1

Sequence Viewer

Length: 405 bp
ATGTTCCTCCACCTTGCCATATTTGCAGGGTTTACACTTTCAGCTGAGTTTATTAATTCGTTTCAAATCATATCTGGGGTCGTTGGATTGCTTACGGCCTCTGTTTTCTGCCAAGAGCTTTTCCTTCTCCATTTCCACTCCACTGACCATGTTGGTCTTGAAGAGCATTACCATTGGTTATTGCAGCTCATAGTGTTTGCTATGCGGCAAGGTTGGTGCTTTACTATTTTCTTTGTGAATGATCCAATTTGCTCCATCATTCTTTTTGTGCAGAAAGATATTCATCGGAGGCTTGACAAAGAACACCACCTTGGGTTCGTGGAGAATTGCCGCTTCCGAAGTGTAGAGCCTCTTTGGATTAAGTGGAGTTCTCCGACAAGAGCTGGCTTCAAGCTTGGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

134

Amino Acids

15.67

Weight (kDa)

7.12

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF716 PF04819 26 - 80 2.8e-12 Family of unknown function (DUF716)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 205, 331
AclWI GGATC 1 cut(s) 236
AgsI TTSAA 3 cut(s) 65, 161, 391
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 5 cut(s) 44, 118, 187, 383, 394
AluI AGCT 5 cut(s) 44, 118, 187, 383, 394
AlwI GGATC 1 cut(s) 236
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 184
AseI ATTAAT 1 cut(s) 54
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 111
BisI GCNGC 3 cut(s) 185, 206, 331
BlsI GCNGC 3 cut(s) 186, 207, 332
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 310
BseJI GATNNNNATC 1 cut(s) 282
BseMII CTCAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 290
BshFI GGCC 1 cut(s) 98
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 2 cut(s) 205, 331
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 37
BspPI GGATC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 1 cut(s) 45
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 385
CviAII CATG 1 cut(s) 149
CviJI RGCY 9 cut(s) 44, 98, 118, 187, 292, 349, 383, 387, 394
CviKI_1 RGCY 9 cut(s) 44, 98, 118, 187, 292, 349, 383, 387, 394
DdeI CTNAG 1 cut(s) 45
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 1 cut(s) 152
FaiI YATR 5 cut(s) 20, 71, 150, 191, 203
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 185, 206, 331
Fsp4HI GCNGC 3 cut(s) 185, 206, 331
GluI GCNGC 3 cut(s) 185, 206, 331
HaeIII GGCC 1 cut(s) 98
Hin1II CATG 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 392
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 3 cut(s) 288, 338, 375
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 26, 184, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 45
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 1 cut(s) 241
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 3 cut(s) 12, 60, 369
Lsp1109I GCAGC 1 cut(s) 196
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 1 cut(s) 173
MluCI AATT 3 cut(s) 55, 246, 325
MmeI TCCRAC 2 cut(s) 64, 398
MnlI CCTC 4 cut(s) 17, 109, 282, 360
MseI TTAA 2 cut(s) 54, 360
MspA1I CMGCKG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 1 cut(s) 241
NlaIII CATG 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 156
PkrI GCNGC 3 cut(s) 186, 207, 332
PshBI ATTAAT 1 cut(s) 54
PvuII CAGCTG 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 2 cut(s) 54, 360
SatI GCNGC 3 cut(s) 185, 206, 331
Sau3AI GATC 1 cut(s) 241
SetI ASST 8 cut(s) 15, 46, 120, 189, 214, 312, 385, 396
Sse9I AATT 3 cut(s) 55, 246, 325
SsiI CCGC 2 cut(s) 205, 331
StyI CCWWGG 1 cut(s) 310
TasI AATT 3 cut(s) 55, 246, 325
TauI GCSGC 2 cut(s) 208, 333
Tru1I TTAA 2 cut(s) 54, 360
Tru9I TTAA 2 cut(s) 54, 360
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 272
TspRI CASTG 1 cut(s) 148
VspI ATTAAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.