Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0011621

Physical Location & Seq

Genomic Coordinates Forward (+)

30358459 .. 30364326

Gene Structure 5868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGTGATTCTGGGTTTGATGTTTCAGGGTTGAATGTCCTCCCGGAGGTTGCAGATCTAGTTGGAATCAACATCTTGCTAGATTTGATTCCAACACAAGGGCTTCAGATGCTGATGGAGTTCAAGATTATGAAGAAGAAAGGCTTGCTAGCGGCACATCTGGAGAAGGCCTTCTTCATTCCCAAGAAGAAAAGGTCCAGTCTTTCTATTTCTATCTGGATAGAAGCAGTAACATACGGTGAAGGTAGCTCAAGGGATGGCCAAGCAAGAAAGAGGCAGAATAATGATCAACAGGCCAAGAGAGCAGCTGCTCCAAAGAGGTCTAAGAATGCCATTCCTCAGGTCATCACATCAAAAATGACATACAAAACAAGAAAAGCAGCTGAGGAAGCATCATCGTCACATGCTGTGCAACCAAATTCAAAAGCTAGAAGGCAACCAAGTTCAAAAGCTAGAAGGCCAGCAAGTTCAGAAGATAATGATGGTGATGTTTTGTGTGCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.35

Weight (kDa)

9.95

Isoelectric Point (pI)

60.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011621)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000868
rosa_multiflora	Rmu_sc0002933.1_g000011 Rmu_sc0003707.1_g000002 Rmu_sc0004180.1_g000020 Rmu_sc0008558.1_g000002 Rmu_sc0030499.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057770 Rroxscaffold_4G00303260 Rroxscaffold_4G00323430
rosa_rugosa	Rorug02G0301700
rosa_samantha	Rh2AG433000 Rh2AG531900 Rh2CG367300 Rh3AG285900 Rh3AG292900 Rh4AG110800 Rh7AG458200
rosa_wichuraiana	Rw3G023850 Rw3G029550 Rw4G003450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	46, 98
AgsI	TTSAA	4 cut(s)	34, 124, 423, 447
AluBI	AGCT	5 cut(s)	249, 308, 383, 428, 452
AluI	AGCT	5 cut(s)	249, 308, 383, 428, 452
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	4 cut(s)	168, 259, 294, 458
ApeKI	GCWGC	3 cut(s)	305, 308, 380
ApoI	RAATTY	1 cut(s)	418
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	3 cut(s)	17, 251, 497
AsuNHI	GCTAGC	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	195
AxyI	CCTNAGG	1 cut(s)	339
BalI	TGGCCA	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	3 cut(s)	295, 317, 392
BccI	CCATC	3 cut(s)	109, 251, 476
BclI	TGATCA	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	44
BfaI	CTAG	5 cut(s)	59, 80, 149, 429, 453
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	4 cut(s)	153, 306, 309, 381
BlsI	GCNGC	4 cut(s)	154, 307, 310, 382
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	2 cut(s)	99, 401
BmtI	GCTAGC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	235
BpuMI	CCSGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 98
Bse1I	ACTGG	1 cut(s)	198
Bse21I	CCTNAGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	46, 98
BseMII	CTCAG	2 cut(s)	353, 375
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	3 cut(s)	295, 317, 392
BshFI	GGCC	4 cut(s)	170, 261, 296, 460
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	46, 98
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	4 cut(s)	170, 261, 296, 460
Bsp143I	GATC	2 cut(s)	55, 286
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	4 cut(s)	170, 261, 296, 460
BspCNI	CTCAG	2 cut(s)	352, 376
BspOI	GCTAGC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	55, 286
Bst4CI	ACNGT	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	146, 150, 462
BstDEI	CTNAG	3 cut(s)	324, 339, 384
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	2 cut(s)	58, 289
BstMBI	GATC	2 cut(s)	55, 286
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 302, 389
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	295, 317, 392
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	4 cut(s)	170, 261, 296, 460
BtsCI	GGATG	1 cut(s)	262
Cac8I	GCNNGC	3 cut(s)	146, 150, 462
CaiI	CAGNNNCTG	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	195
CviAII	CATG	1 cut(s)	404
DdeI	CTNAG	3 cut(s)	324, 339, 384
DpnI	GATC	2 cut(s)	57, 288
DpnII	GATC	2 cut(s)	55, 286
EaeI	YGGCCR	1 cut(s)	259
Eco147I	AGGCCT	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	89
Eco81I	CCTNAGG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	407
FaiI	YATR	4 cut(s)	131, 235, 364, 405
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 158, 190
FatI	CATG	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	4 cut(s)	153, 306, 309, 381
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	4 cut(s)	153, 306, 309, 381
FspBI	CTAG	5 cut(s)	59, 80, 149, 429, 453
GluI	GCNGC	4 cut(s)	153, 306, 309, 381
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	4 cut(s)	170, 261, 296, 460
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	407
HinfI	GANTC	3 cut(s)	8, 66, 88
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	3 cut(s)	17, 251, 497
Hpy188I	TCNGA	3 cut(s)	108, 472, 506
Hpy188III	TCNNGA	3 cut(s)	124, 161, 217
HpyAV	CCTTC	5 cut(s)	160, 181, 236, 426, 450
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	3 cut(s)	53, 412, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 302, 389
HpyF3I	CTNAG	3 cut(s)	324, 339, 384
Hsp92II	CATG	1 cut(s)	407
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	55, 286
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	8 cut(s)	12, 57, 146, 202, 211, 278, 326, 474
Lsp1109I	GCAGC	3 cut(s)	295, 317, 392
LweI	GCATC	2 cut(s)	99, 401
MaeI	CTAG	5 cut(s)	59, 80, 149, 429, 453
MaeIII	GTNAC	2 cut(s)	229, 399
MalI	GATC	2 cut(s)	57, 288
MboI	GATC	2 cut(s)	55, 286
MboII	GAAGA	5 cut(s)	145, 148, 166, 199, 485
MflI	RGATCY	1 cut(s)	55
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	1 cut(s)	418
MluNI	TGGCCA	1 cut(s)	261
MmeI	TCCRAC	2 cut(s)	43, 116
MnlI	CCTC	6 cut(s)	40, 50, 267, 312, 348, 379
Mox20I	TGGCCA	1 cut(s)	261
MroXI	GAANNNNTTC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	261
MspA1I	CMGCKG	2 cut(s)	308, 383
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	334
MwoI	GCNNNNNNNGC	3 cut(s)	109, 302, 389
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	2 cut(s)	55, 286
NheI	GCTAGC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	399
NspI	RCATGY	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	170
PctI	GAATGC	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	8, 66, 88
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	4 cut(s)	154, 307, 310, 382
PspPI	GGNCC	1 cut(s)	195
PstNI	CAGNNNCTG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	2 cut(s)	308, 383
SatI	GCNGC	4 cut(s)	153, 306, 309, 381
Sau3AI	GATC	2 cut(s)	55, 286
Sau96I	GGNCC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	44
SfaNI	GCATC	2 cut(s)	99, 401
SinI	GGWCC	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	1 cut(s)	418
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	5 cut(s)	59, 80, 149, 429, 453
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	239
TasI	AATT	1 cut(s)	418
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	3 cut(s)	8, 66, 88
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	3 cut(s)	305, 308, 380
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	2 cut(s)	146, 166
VpaK11BI	GGWCC	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	5 cut(s)	59, 80, 149, 429, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.