Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003707.1

Orthogroup ID

OG0011621

Physical Location & Seq

Genomic Coordinates Reverse (-)

2199 .. 2657

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003707.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgcaatccaccaagaaacaacagctggcggccattttcgactggtttgtcaccgagaaaaagcacaacaccaacaaccggagatccaaacccagccgagtgaggagcacgagattgtcgctgtcgtcgttctcctgccacgttcccgacgaggatcgcgagctccttctcccgcctgaggccgtcgatgtgtcatcagcagtgctggatacaacgtcgttcaaggctgacaagagcgttgactggcaggtgtcgctgccaagggtgtcgagcaagagtagctacgccgggagcttgttctctaggacgacgaccctggacaggaacttctccggcaaggtcaaggactcgtcggcgacgccgaggccggtggaggaagaggaggaggaggtggtgggagtggaggcgagtagggatagcttggcacagaggaacggggtggaggcgcctatcgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EDR1 Pkinase_Tyr

Protein Analysis

152

Amino Acids

16.86

Weight (kDa)

6.75

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011621)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000868
rosa_multiflora	Rmu_sc0002933.1_g000011 Rmu_sc0003707.1_g000002 Rmu_sc0004180.1_g000020 Rmu_sc0008558.1_g000002 Rmu_sc0030499.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057770 Rroxscaffold_4G00303260 Rroxscaffold_4G00323430
rosa_rugosa	Rorug02G0301700
rosa_samantha	Rh2AG433000 Rh2AG531900 Rh2CG367300 Rh3AG285900 Rh3AG292900 Rh4AG110800 Rh7AG458200
rosa_wichuraiana	Rw3G023850 Rw3G029550 Rw4G003450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	238
AasI	GACNNNNNNGTC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	238
AccB1I	GGYRCC	1 cut(s)	445
AccII	CGCG	1 cut(s)	159
AciI	CCGC	2 cut(s)	29, 173
AclWI	GGATC	2 cut(s)	78, 162
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	2 cut(s)	359, 446
AfiI	CCNNNNNNNGG	3 cut(s)	78, 178, 321
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	5 cut(s)	25, 163, 282, 294, 420
AluI	AGCT	5 cut(s)	25, 163, 282, 294, 420
Alw21I	GWGCWC	2 cut(s)	110, 165
AlwI	GGATC	2 cut(s)	78, 162
AoxI	GGCC	3 cut(s)	30, 180, 365
ApeKI	GCWGC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	448
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	43
AxyI	CCTNAGG	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	165
BauI	CACGAG	1 cut(s)	109
Bbv12I	GWGCWC	2 cut(s)	110, 165
BbvI	GCAGC	1 cut(s)	243
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	289
BfaI	CTAG	2 cut(s)	303, 457
BfoI	RGCGCY	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	30, 257
BlsI	GCNGC	2 cut(s)	31, 258
Bme1390I	CCNGG	2 cut(s)	289, 317
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	289, 317
BpuMI	CCSGG	1 cut(s)	289
BsaHI	GRCGYC	2 cut(s)	359, 446
BsaJI	CCNNGG	3 cut(s)	260, 315, 362
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 178, 321
Bse118I	RCCGGY	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	47, 248
Bse21I	CCTNAGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	260, 315, 362
BseLI	CCNNNNNNNGG	3 cut(s)	78, 178, 321
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	47, 248
BseRI	GAGGAG	4 cut(s)	118, 395, 398, 401
BseXI	GCAGC	1 cut(s)	243
BseYI	CCCAGC	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	3 cut(s)	32, 182, 367
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	2 cut(s)	110, 165
BsiSI	CCGG	4 cut(s)	79, 288, 333, 368
BslI	CCNNNNNNNGG	3 cut(s)	78, 178, 321
BsnI	GGCC	3 cut(s)	32, 182, 367
Bsp1286I	GDGCHC	2 cut(s)	110, 165
Bsp143I	GATC	2 cut(s)	83, 154
Bsp68I	TCGCGA	1 cut(s)	159
BspACI	CCGC	2 cut(s)	29, 173
BspANI	GGCC	3 cut(s)	32, 182, 367
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	78, 162
BspT107I	GGYRCC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	47, 248
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	260, 315, 362
BssMI	GATC	2 cut(s)	83, 154
BssNI	GRCGYC	2 cut(s)	359, 446
BssSI	CACGAG	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	2 cut(s)	359, 446
BstC8I	GCNNGC	2 cut(s)	27, 161
BstDEI	CTNAG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	2 cut(s)	86, 157
BstMBI	GATC	2 cut(s)	83, 154
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 279, 452
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	287, 315
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
Bsu36I	CCTNAGG	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	32, 182, 367
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
BtuMI	TCGCGA	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	27, 161
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	367
CseI	GACGC	1 cut(s)	367
DdeI	CTNAG	1 cut(s)	177
DinI	GGCGCC	1 cut(s)	447
DpnI	GATC	2 cut(s)	85, 156
DpnII	GATC	2 cut(s)	83, 154
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	163
Eco81I	CCTNAGG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	165
EgeI	GGCGCC	1 cut(s)	447
EheI	GGCGCC	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	260
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	30, 257
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	30, 257
FspBI	CTAG	2 cut(s)	303, 457
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	2 cut(s)	30, 257
GsaI	CCCAGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	3 cut(s)	32, 182, 367
HapII	CCGG	4 cut(s)	79, 288, 333, 368
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	1 cut(s)	448
Hin1I	GRCGYC	2 cut(s)	359, 446
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	4 cut(s)	79, 288, 333, 368
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	146, 158
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	7 cut(s)	130, 152, 188, 220, 313, 355, 361
HpyAV	CCTTC	1 cut(s)	176
HpyCH4IV	ACGT	2 cut(s)	141, 215
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 279, 452
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	2 cut(s)	141, 215
Hsp92I	GRCGYC	2 cut(s)	359, 446
HspAI	GCGC	1 cut(s)	446
KasI	GGCGCC	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	83, 154
LmnI	GCTCC	3 cut(s)	105, 168, 291
Lsp1109I	GCAGC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	303, 457
MaeII	ACGT	2 cut(s)	141, 215
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	85, 156
MboI	GATC	2 cut(s)	83, 154
MboII	GAAGA	1 cut(s)	389
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	110, 165
Mly113I	GGCGCC	1 cut(s)	446
MlyI	GAGTC	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	4 cut(s)	79, 288, 333, 368
MspR9I	CCNGG	2 cut(s)	289, 317
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	253, 279, 452
NarI	GGCGCC	1 cut(s)	446
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	83, 154
NlaIV	GGNNCC	1 cut(s)	447
NmeAIII	GCCGAG	2 cut(s)	122, 387
NmuCI	GTSAC	1 cut(s)	49
NruI	TCGCGA	1 cut(s)	159
PaqCI	CACCTGC	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	4 cut(s)	125, 147, 156, 359
PkrI	GCNGC	2 cut(s)	31, 258
PleI	GAGTC	1 cut(s)	341
PluTI	GGCGCC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	25
RruI	TCGCGA	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	165
SatI	GCNGC	2 cut(s)	30, 257
Sau3AI	GATC	2 cut(s)	83, 154
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	2 cut(s)	289, 317
SduI	GDGCHC	2 cut(s)	110, 165
SfoI	GGCGCC	1 cut(s)	447
SsiI	CCGC	2 cut(s)	29, 173
SspDI	GGCGCC	1 cut(s)	445
SspMI	CTAG	2 cut(s)	303, 457
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	287, 315
StyI	CCWWGG	1 cut(s)	260
TaiI	ACGT	2 cut(s)	144, 218
TaqI	TCGA	3 cut(s)	39, 186, 269
TauI	GCSGC	1 cut(s)	32
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	49
TspRI	CASTG	1 cut(s)	207
XspI	CTAG	2 cut(s)	303, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.