Rh3AG292900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0011621
Physical Location & Seq
Reverse (-)
35431384 .. 35434284
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG292900.1

Sequence Viewer

Length: 336 bp
ATGGGTGATTCTGGGTTTGATGTTTTAGGGTTGAATCTCCTCCTGGAGGTTGCAGATCTTGTTGGAATCAAGATCTTGCTGGCTTTGATTCCAACACAAGGGCTTCAGAAGCTGATAGAGTTCAAGATTATGAAGAAGAAAGGCTTGCTGGCGGCACATCTGGAGAAGGCCTTCTTCATTCCCAAGAAGAAAATGTCCAGTCTTTCTATTTCTATCTGTATAGAAGCAATAACATACGTAAATTCTATTAATCTTTCAGCTCCAAGTTTGAAGACTCTACTGGGGTATAATTTCATAGTCCCACCGTTGTTCCTTCTTCAAAAAGATGAACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.23

Weight (kDa)

9.3

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 46, 98
AgsI TTSAA 4 cut(s) 34, 124, 271, 320
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 2 cut(s) 112, 260
AluI AGCT 2 cut(s) 112, 260
AlwNI CAGNNNCTG 1 cut(s) 112
AoxI GGCC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 241
AseI ATTAAT 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 44
BglII AGATCT 2 cut(s) 55, 72
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 290
BmuI ACTGGG 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 278
BpmI CTGGAG 2 cut(s) 65, 182
BsaAI YACGTR 1 cut(s) 238
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 98
Bse1I ACTGG 2 cut(s) 198, 285
BseBI CCWGG 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 46, 98
BseNI ACTGG 2 cut(s) 198, 285
BseRI GAGGAG 1 cut(s) 29
BshFI GGCC 1 cut(s) 170
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 46, 98
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 55, 72
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 170
BsrI ACTGG 2 cut(s) 198, 285
BssMI GATC 2 cut(s) 55, 72
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 306, 333
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 3 cut(s) 81, 146, 150
BstENI CCTNNNNNAGG 1 cut(s) 44
BstKTI GATC 2 cut(s) 58, 75
BstMBI GATC 2 cut(s) 55, 72
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstSNI TACGTA 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 2 cut(s) 55, 72
BstYI RGATCY 2 cut(s) 55, 72
BsuRI GGCC 1 cut(s) 170
Cac8I GCNNGC 3 cut(s) 81, 146, 150
CaiI CAGNNNCTG 1 cut(s) 112
CviJI RGCY 6 cut(s) 83, 103, 112, 144, 170, 260
CviKI_1 RGCY 6 cut(s) 83, 103, 112, 144, 170, 260
DpnI GATC 2 cut(s) 57, 74
DpnII GATC 2 cut(s) 55, 72
Eco105I TACGTA 1 cut(s) 238
Eco147I AGGCCT 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 42
FaiI YATR 5 cut(s) 131, 221, 235, 288, 296
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 158, 190
FaqI GGGAC 1 cut(s) 284
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 2 cut(s) 65, 182
HaeIII GGCC 1 cut(s) 170
HinfI GANTC 5 cut(s) 8, 34, 66, 88, 274
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 70, 124, 161
HpyAV CCTTC 3 cut(s) 160, 181, 323
HpyCH4III ACNGT 2 cut(s) 306, 333
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpySE526I ACGT 1 cut(s) 237
Kzo9I GATC 2 cut(s) 55, 72
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 7 cut(s) 29, 56, 65, 134, 146, 211, 266
MaeII ACGT 1 cut(s) 237
MalI GATC 2 cut(s) 57, 74
MboI GATC 2 cut(s) 55, 72
MboII GAAGA 6 cut(s) 145, 148, 166, 199, 283, 308
MflI RGATCY 2 cut(s) 55, 72
MluCI AATT 2 cut(s) 241, 289
MlyI GAGTC 1 cut(s) 268
MmeI TCCRAC 2 cut(s) 43, 116
MnlI CCTC 2 cut(s) 40, 50
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 2 cut(s) 55, 72
PceI AGGCCT 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 4 cut(s) 8, 34, 66, 88
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
Ppu21I YACGTR 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PstNI CAGNNNCTG 1 cut(s) 112
PsuI RGATCY 2 cut(s) 55, 72
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 55, 72
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 44
SetI ASST 4 cut(s) 51, 114, 240, 262
SnaBI TACGTA 1 cut(s) 238
Sse9I AATT 2 cut(s) 241, 289
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 1 cut(s) 152
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 306, 333
TaiI ACGT 1 cut(s) 240
TasI AATT 2 cut(s) 241, 289
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 4 cut(s) 8, 34, 66, 88
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TspDTI ATGAA 3 cut(s) 146, 166, 283
VspI ATTAAT 1 cut(s) 249
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.