Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011621

Physical Location & Seq

Genomic Coordinates Reverse (-)

76022986 .. 76024376

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG531900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTGATTCTGGGTTTGATGTTTCAAGGTTGAATCTCCTCCCGGAGGTTGCAGATCTTGTTGGAATCAAGATCTTGCTGGCTTTGATTCCAACACAAGGGCTTCAGATGCTGATGGAGTTCAAGATTATGAAGAAGAAAGGCTTGCTGGCGGCACATATGGAGAAGGCCTTCTTCATTCCCAAAAAGAAAAGTTATCCGGTGTTTGAGACAGTGAGGATGGCATTGGCAATAGCAGCTATAACAATAGCTTTACCAAATCCCATGCATTTGTCTCTAACTTTATCAAATGCCAGAGGCAGAGGAGCCTTCTGCACAAGAAGAAGAACCCATTGCTTAAAGATTACTGGGTTCAGTCTTGCTGATGGCTCTGCTCTTTTCCAAGCAGCCCATTACAATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

134

Amino Acids

14.7

Weight (kDa)

10.02

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011621)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000868
rosa_multiflora	Rmu_sc0002933.1_g000011 Rmu_sc0003707.1_g000002 Rmu_sc0004180.1_g000020 Rmu_sc0008558.1_g000002 Rmu_sc0030499.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057770 Rroxscaffold_4G00303260 Rroxscaffold_4G00323430
rosa_rugosa	Rorug02G0301700
rosa_samantha	Rh2AG433000 Rh2AG531900 Rh2CG367300 Rh3AG285900 Rh3AG292900 Rh4AG110800 Rh7AG458200
rosa_wichuraiana	Rw3G023850 Rw3G029550 Rw4G003450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	46, 98
AgsI	TTSAA	3 cut(s)	27, 34, 124
AluBI	AGCT	2 cut(s)	239, 251
AluI	AGCT	2 cut(s)	239, 251
Alw26I	GTCTC	2 cut(s)	203, 279
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	236, 386
Asp700I	GAANNNNTTC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	248, 398
BccI	CCATC	3 cut(s)	109, 214, 359
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	203, 279
BglII	AGATCT	2 cut(s)	55, 72
BisI	GCNGC	3 cut(s)	153, 237, 387
BlsI	GCNGC	3 cut(s)	154, 238, 388
Bme1390I	CCNGG	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	44
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 98
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	46, 98
BseMI	GCAATG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	2 cut(s)	29, 318
BseXI	GCAGC	2 cut(s)	248, 398
BsgI	GTGCAG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	44, 200
BslI	CCNNNNNNNGG	2 cut(s)	46, 98
BsmAI	GTCTC	2 cut(s)	203, 279
BsnI	GGCC	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	55, 72
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	352
BssMI	GATC	2 cut(s)	55, 72
Bst4CI	ACNGT	1 cut(s)	214
BstC8I	GCNNGC	3 cut(s)	81, 146, 150
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	225
BstKTI	GATC	2 cut(s)	58, 75
BstMAI	GTCTC	2 cut(s)	203, 279
BstMBI	GATC	2 cut(s)	55, 72
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 236
BstSCI	CCNGG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	248, 398
BstX2I	RGATCY	2 cut(s)	55, 72
BstYI	RGATCY	2 cut(s)	55, 72
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	3 cut(s)	81, 146, 150
CaiI	CAGNNNCTG	1 cut(s)	112
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	9 cut(s)	83, 103, 144, 170, 239, 251, 308, 369, 389
CviKI_1	RGCY	9 cut(s)	83, 103, 144, 170, 239, 251, 308, 369, 389
DpnI	GATC	2 cut(s)	57, 74
DpnII	GATC	2 cut(s)	55, 72
Eco147I	AGGCCT	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	89
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoT22I	ATGCAT	1 cut(s)	270
FaeI	CATG	1 cut(s)	268
FaiI	YATR	6 cut(s)	131, 159, 161, 242, 266, 403
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 158, 190
FatI	CATG	1 cut(s)	264
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	153, 237, 387
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	3 cut(s)	153, 237, 387
GluI	GCNGC	3 cut(s)	153, 237, 387
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	2 cut(s)	44, 200
Hin1II	CATG	1 cut(s)	268
HinfI	GANTC	4 cut(s)	8, 34, 66, 88
HpaII	CCGG	2 cut(s)	44, 200
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	2 cut(s)	70, 124
HpyAV	CCTTC	3 cut(s)	160, 181, 319
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	53, 268, 315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 236
Hsp92II	CATG	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	55, 72
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	6 cut(s)	57, 65, 134, 213, 307, 333
Lsp1109I	GCAGC	2 cut(s)	248, 398
LweI	GCATC	1 cut(s)	99
MalI	GATC	2 cut(s)	57, 74
MboI	GATC	2 cut(s)	55, 72
MboII	GAAGA	5 cut(s)	145, 148, 166, 333, 336
MflI	RGATCY	2 cut(s)	55, 72
MmeI	TCCRAC	2 cut(s)	43, 116
MnlI	CCTC	5 cut(s)	40, 50, 210, 290, 296
Mph1103I	ATGCAT	1 cut(s)	270
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	2 cut(s)	44, 200
MspR9I	CCNGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	109, 236
NciI	CCSGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	2 cut(s)	55, 72
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	4 cut(s)	8, 34, 66, 88
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	154, 238, 388
PspN4I	GGNNCC	1 cut(s)	307
PstNI	CAGNNNCTG	1 cut(s)	112
PsuI	RGATCY	2 cut(s)	55, 72
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	3 cut(s)	153, 237, 387
Sau3AI	GATC	2 cut(s)	55, 72
ScrFI	CCNGG	1 cut(s)	44
SetI	ASST	4 cut(s)	32, 51, 241, 253
SfaNI	GCATC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	396
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	152
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	214
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	4 cut(s)	8, 34, 66, 88
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	2 cut(s)	236, 386
TspDTI	ATGAA	2 cut(s)	146, 166
TspRI	CASTG	1 cut(s)	219
XagI	CCTNNNNNAGG	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.