Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0011621

Physical Location & Seq

Genomic Coordinates Reverse (-)

6934292 .. 6938007

Gene Structure 3716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G003450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAATCGGACCTAGTGTCCGGCGGTATCGTTCAATGGAATACGGCCAGTCGCAGAATTGGTTATGTGGCAGCTTCGAGATTGGATCGGAGTGTTCCGATCTGGTTTGGATTGGTTGGAGCCTTCCAATGGAAGGCTGTTGTTGGATGGGGCGGAGATGTTTGCGGGCATGGTGGGGAGATCGACGGAGTGGAGGGACGGCCGGCGTGTGTTCGGTGCGGTGGGTGTGCTGTCGACAGTGGAACGCCGAATGCTGCTTATTGCGGTAGGGTGGCCGCCGGGTTGAATCTCCTCCCGGAGGTTGCAGATGTTGTTGGAATCAAGATCTTGCTGGCTTTGATTCCAACACAAGGGCTTCAGATGTTGATGGAGTTCAAGATTATGAAGAAGAAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

13.83

Weight (kDa)

8.33

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011621)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000868
rosa_multiflora	Rmu_sc0002933.1_g000011 Rmu_sc0003707.1_g000002 Rmu_sc0004180.1_g000020 Rmu_sc0008558.1_g000002 Rmu_sc0030499.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057770 Rroxscaffold_4G00303260 Rroxscaffold_4G00323430
rosa_rugosa	Rorug02G0301700
rosa_samantha	Rh2AG433000 Rh2AG531900 Rh2CG367300 Rh3AG285900 Rh3AG292900 Rh4AG110800 Rh7AG458200
rosa_wichuraiana	Rw3G023850 Rw3G029550 Rw4G003450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	6 cut(s)	24, 153, 165, 219, 264, 276
AclWI	GGATC	1 cut(s)	93
AcoI	YGGCCR	3 cut(s)	45, 200, 273
AcuI	CTGAAG	1 cut(s)	341
AfiI	CCNNNNNNNGG	4 cut(s)	129, 133, 298, 350
AgsI	TTSAA	3 cut(s)	35, 286, 376
AhdI	GACNNNNNGTC	1 cut(s)	16
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AlwI	GGATC	1 cut(s)	93
AoxI	GGCC	3 cut(s)	45, 200, 273
ApeKI	GCWGC	2 cut(s)	71, 254
AspS9I	GGNCC	1 cut(s)	10
AsuC2I	CCSGG	2 cut(s)	280, 296
AvaII	GGWCC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	83, 241
BccI	CCATC	2 cut(s)	141, 361
BceAI	ACGGC	2 cut(s)	60, 215
BcnI	CCSGG	2 cut(s)	280, 296
BfaI	CTAG	2 cut(s)	14, 397
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	3 cut(s)	72, 255, 276
BlsI	GCNGC	3 cut(s)	73, 256, 277
Bme1390I	CCNGG	2 cut(s)	280, 296
Bme18I	GGWCC	1 cut(s)	10
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	280, 296
BpuMI	CCSGG	2 cut(s)	280, 296
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 133, 298, 350
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	4 cut(s)	129, 133, 298, 350
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	281
BseX3I	CGGCCG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	83, 241
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	3 cut(s)	47, 202, 275
BsiEI	CGRYCG	1 cut(s)	203
BsiSI	CCGG	4 cut(s)	21, 203, 279, 296
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	4 cut(s)	129, 133, 298, 350
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	47, 202, 275
Bsp143I	GATC	4 cut(s)	85, 99, 180, 324
BspACI	CCGC	6 cut(s)	24, 153, 165, 219, 264, 276
BspANI	GGCC	3 cut(s)	47, 202, 275
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	202
BssMI	GATC	4 cut(s)	85, 99, 180, 324
Bst4CI	ACNGT	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	167, 204, 333
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	152
BstKTI	GATC	4 cut(s)	88, 102, 183, 327
BstMBI	GATC	4 cut(s)	85, 99, 180, 324
BstMCI	CGRYCG	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	278, 294
BstV1I	GCAGC	2 cut(s)	83, 241
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BstZI	CGGCCG	1 cut(s)	200
BsuRI	GGCC	3 cut(s)	47, 202, 275
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	3 cut(s)	167, 204, 333
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	10
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	9 cut(s)	47, 74, 122, 137, 202, 275, 335, 355, 396
CviKI_1	RGCY	9 cut(s)	47, 74, 122, 137, 202, 275, 335, 355, 396
DpnI	GATC	4 cut(s)	87, 101, 182, 326
DpnII	GATC	4 cut(s)	85, 99, 180, 324
DriI	GACNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	3 cut(s)	45, 200, 273
EagI	CGGCCG	1 cut(s)	200
Eam1105I	GACNNNNNGTC	1 cut(s)	16
EciI	GGCGGA	1 cut(s)	168
EclXI	CGGCCG	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	10
Eco52I	CGGCCG	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	341
EcoNI	CCTNNNNNAGG	1 cut(s)	296
FaeI	CATG	1 cut(s)	173
FaiI	YATR	3 cut(s)	66, 171, 383
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	1 cut(s)	169
FauI	CCCGC	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	72, 255, 276
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	3 cut(s)	72, 255, 276
FspBI	CTAG	2 cut(s)	14, 397
GluI	GCNGC	3 cut(s)	72, 255, 276
HaeIII	GGCC	3 cut(s)	47, 202, 275
HapII	CCGG	4 cut(s)	21, 203, 279, 296
Hin1II	CATG	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	4 cut(s)	5, 286, 318, 340
HpaII	CCGG	4 cut(s)	21, 203, 279, 296
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	4 cut(s)	10, 90, 99, 360
Hpy188III	TCNNGA	3 cut(s)	78, 322, 376
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	127, 133
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	173
KroI	GCCGGC	1 cut(s)	202
KroNI	GCCGGC	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	85, 99, 180, 324
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	7 cut(s)	34, 61, 88, 216, 292, 309, 317
Lsp1109I	GCAGC	2 cut(s)	83, 241
MaeI	CTAG	2 cut(s)	14, 397
MalI	GATC	4 cut(s)	87, 101, 182, 326
MboI	GATC	4 cut(s)	85, 99, 180, 324
MboII	GAAGA	1 cut(s)	397
MflI	RGATCY	1 cut(s)	324
MluCI	AATT	1 cut(s)	57
MmeI	TCCRAC	4 cut(s)	97, 124, 295, 368
MnlI	CCTC	3 cut(s)	187, 292, 302
MroNI	GCCGGC	1 cut(s)	202
MspI	CCGG	4 cut(s)	21, 203, 279, 296
MspR9I	CCNGG	2 cut(s)	280, 296
Mva1269I	GAATGC	1 cut(s)	256
NaeI	GCCGGC	1 cut(s)	204
NciI	CCSGG	2 cut(s)	280, 296
NdeII	GATC	4 cut(s)	85, 99, 180, 324
NgoMIV	GCCGGC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	121
PctI	GAATGC	1 cut(s)	256
PdiI	GCCGGC	1 cut(s)	204
PfeI	GAWTC	4 cut(s)	5, 286, 318, 340
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	73, 256, 277
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	324
SalI	GTCGAC	1 cut(s)	233
SatI	GCNGC	3 cut(s)	72, 255, 276
Sau3AI	GATC	4 cut(s)	85, 99, 180, 324
Sau96I	GGNCC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	280, 296
SetI	ASST	3 cut(s)	15, 76, 303
SinI	GGWCC	1 cut(s)	10
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	6 cut(s)	24, 153, 165, 219, 264, 276
SspMI	CTAG	2 cut(s)	14, 397
StyD4I	CCNGG	2 cut(s)	278, 294
TaaI	ACNGT	1 cut(s)	239
TaqI	TCGA	3 cut(s)	77, 183, 234
TasI	AATT	1 cut(s)	57
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	4 cut(s)	5, 286, 318, 340
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	2 cut(s)	71, 254
TspDTI	ATGAA	1 cut(s)	398
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	10
XagI	CCTNNNNNAGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	2 cut(s)	14, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.