Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030499.1

Orthogroup ID

OG0011621

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1523

Gene Structure 1523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030499.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 580 bp

aaatcggaaatcgaacccacctgaagaatctgaaatcaacaggcatgctgtatccgatcaatatttcacgggcggccgaaacaccaacaccgccacaagtagtaccagcagcgccgccagcatgcaatccaccaagaaacaacagctggcggccattttcgactggtttgtcaccgagaaaaagcacaacaccaacaaccggagatccaaacccagccgagtgaggagcacgagattgtcgctgtcgtcgttctcctgccacgttcccgacgaggatcgcgagctccttctcccgcctgaggccgtcgatgtgtcatcagcagtgctggatacaacgtcgttcaaggctgacaagagcgttgactggcaggtgtcgctgccaagggtgtcgagcaagagtagctacgccgggagcttgttctctaggacgacgaccctggacaggaacttctccggcaaggtcaaggactcgtcggcgacgccgaggccggtggaggaagaggaggaggaggtggtgggagtggaggcgagtagggatagcttggcacagaggaacggggtggaggcgcctatcgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EDR1 Pkinase_Tyr

Protein Analysis

192

Amino Acids

21.11

Weight (kDa)

7.05

Isoelectric Point (pI)

55.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011621)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000868
rosa_multiflora	Rmu_sc0002933.1_g000011 Rmu_sc0003707.1_g000002 Rmu_sc0004180.1_g000020 Rmu_sc0008558.1_g000002 Rmu_sc0030499.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057770 Rroxscaffold_4G00303260 Rroxscaffold_4G00323430
rosa_rugosa	Rorug02G0301700
rosa_samantha	Rh2AG433000 Rh2AG531900 Rh2CG367300 Rh3AG285900 Rh3AG292900 Rh4AG110800 Rh7AG458200
rosa_wichuraiana	Rw3G023850 Rw3G029550 Rw4G003450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
AasI	GACNNNNNNGTC	1 cut(s)	168
Acc36I	ACCTGC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	566
AccII	CGCG	1 cut(s)	280
AciI	CCGC	5 cut(s)	73, 91, 115, 150, 294
AclWI	GGATC	2 cut(s)	199, 283
AcoI	YGGCCR	2 cut(s)	74, 151
AcuI	CTGAAG	1 cut(s)	43
AcyI	GRCGYC	2 cut(s)	480, 567
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	3 cut(s)	199, 299, 442
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	5 cut(s)	146, 284, 403, 415, 541
AluI	AGCT	5 cut(s)	146, 284, 403, 415, 541
Alw21I	GWGCWC	2 cut(s)	231, 286
AlwI	GGATC	2 cut(s)	199, 283
AoxI	GGCC	4 cut(s)	74, 151, 301, 486
ApeKI	GCWGC	2 cut(s)	109, 377
AspLEI	GCGC	2 cut(s)	114, 569
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	286
BauI	CACGAG	1 cut(s)	230
Bbv12I	GWGCWC	2 cut(s)	231, 286
BbvI	GCAGC	2 cut(s)	121, 364
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	438
BciVI	GTATCC	2 cut(s)	62, 323
BcnI	CCSGG	1 cut(s)	410
BfaI	CTAG	2 cut(s)	424, 578
BfoI	RGCGCY	2 cut(s)	115, 570
BfuAI	ACCTGC	1 cut(s)	359
BfuI	GTATCC	2 cut(s)	62, 323
BisI	GCNGC	5 cut(s)	74, 110, 115, 151, 378
BlsI	GCNGC	5 cut(s)	75, 111, 116, 152, 379
Bme1390I	CCNGG	2 cut(s)	410, 438
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	2 cut(s)	410, 438
BpuMI	CCSGG	1 cut(s)	410
BsaHI	GRCGYC	2 cut(s)	480, 567
BsaJI	CCNNGG	3 cut(s)	381, 436, 483
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 299, 442
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	2 cut(s)	168, 369
Bse21I	CCTNAGG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	381, 436, 483
BseLI	CCNNNNNNNGG	3 cut(s)	199, 299, 442
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	2 cut(s)	168, 369
BseRI	GAGGAG	4 cut(s)	239, 516, 519, 522
BseX3I	CGGCCG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	121, 364
BseYI	CCCAGC	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	4 cut(s)	76, 153, 303, 488
BshNI	GGYRCC	1 cut(s)	566
BsiEI	CGRYCG	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	231, 286
BsiSI	CCGG	4 cut(s)	200, 409, 454, 489
BslI	CCNNNNNNNGG	3 cut(s)	199, 299, 442
BsnI	GGCC	4 cut(s)	76, 153, 303, 488
Bsp1286I	GDGCHC	2 cut(s)	231, 286
Bsp143I	GATC	3 cut(s)	56, 204, 275
Bsp68I	TCGCGA	1 cut(s)	280
BspACI	CCGC	5 cut(s)	73, 91, 115, 150, 294
BspANI	GGCC	4 cut(s)	76, 153, 303, 488
BspCNI	CTCAG	1 cut(s)	290
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	199, 283
BspT107I	GGYRCC	1 cut(s)	566
BsrFI	RCCGGY	1 cut(s)	488
BsrI	ACTGG	2 cut(s)	168, 369
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	3 cut(s)	381, 436, 483
BssMI	GATC	3 cut(s)	56, 204, 275
BssNI	GRCGYC	2 cut(s)	480, 567
BssSI	CACGAG	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	438
Bst6I	CTCTTC	1 cut(s)	493
BstACI	GRCGYC	2 cut(s)	480, 567
BstC8I	GCNNGC	5 cut(s)	46, 119, 123, 148, 282
BstDEI	CTNAG	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	280
BstH2I	RGCGCY	2 cut(s)	115, 570
BstHHI	GCGC	2 cut(s)	114, 569
BstKTI	GATC	3 cut(s)	59, 207, 278
BstMBI	GATC	3 cut(s)	56, 204, 275
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 374, 400, 573
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	2 cut(s)	48, 125
BstSCI	CCNGG	2 cut(s)	408, 436
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	121, 364
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BstZI	CGGCCG	1 cut(s)	74
Bsu36I	CCTNAGG	1 cut(s)	298
BsuI	GTATCC	2 cut(s)	62, 323
BsuRI	GGCC	4 cut(s)	76, 153, 303, 488
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	328
BtuMI	TCGCGA	1 cut(s)	280
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	5 cut(s)	46, 119, 123, 148, 282
CfoI	GCGC	2 cut(s)	114, 569
Cfr10I	RCCGGY	1 cut(s)	488
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	45, 122
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	298
DinI	GGCGCC	1 cut(s)	568
DpnI	GATC	3 cut(s)	58, 206, 277
DpnII	GATC	3 cut(s)	56, 204, 275
DrdI	GACNNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	1 cut(s)	168
EaeI	YGGCCR	2 cut(s)	74, 151
EagI	CGGCCG	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	493
EarI	CTCTTC	1 cut(s)	493
Ecl136II	GAGCTC	1 cut(s)	284
EclXI	CGGCCG	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	286
Eco52I	CGGCCG	1 cut(s)	74
Eco53kI	GAGCTC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	43
Eco81I	CCTNAGG	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	286
EgeI	GGCGCC	1 cut(s)	568
EheI	GGCGCC	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	2 cut(s)	48, 125
FaiI	YATR	2 cut(s)	46, 123
FatI	CATG	2 cut(s)	44, 121
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	74, 110, 115, 151, 378
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	5 cut(s)	74, 110, 115, 151, 378
FspBI	CTAG	2 cut(s)	424, 578
GlaI	GCGC	2 cut(s)	113, 568
GluI	GCNGC	5 cut(s)	74, 110, 115, 151, 378
GsaI	CCCAGC	1 cut(s)	217
HaeII	RGCGCY	2 cut(s)	115, 570
HaeIII	GGCC	4 cut(s)	76, 153, 303, 488
HapII	CCGG	4 cut(s)	200, 409, 454, 489
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	2 cut(s)	114, 569
Hin1I	GRCGYC	2 cut(s)	480, 567
Hin1II	CATG	2 cut(s)	48, 125
Hin6I	GCGC	2 cut(s)	112, 567
HinP1I	GCGC	2 cut(s)	112, 567
HincII	GTYRAC	1 cut(s)	362
HindII	GTYRAC	1 cut(s)	362
HinfI	GANTC	2 cut(s)	27, 468
HpaII	CCGG	4 cut(s)	200, 409, 454, 489
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	3 cut(s)	7, 32, 56
Hpy188III	TCNNGA	2 cut(s)	267, 279
Hpy8I	GTNNAC	1 cut(s)	362
Hpy99I	CGWCG	7 cut(s)	251, 273, 309, 341, 434, 476, 482
HpyAV	CCTTC	1 cut(s)	297
HpyCH4IV	ACGT	2 cut(s)	262, 336
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 374, 400, 573
HpyF3I	CTNAG	1 cut(s)	298
HpySE526I	ACGT	2 cut(s)	262, 336
Hsp92I	GRCGYC	2 cut(s)	480, 567
Hsp92II	CATG	2 cut(s)	48, 125
HspAI	GCGC	2 cut(s)	112, 567
KasI	GGCGCC	1 cut(s)	566
Kzo9I	GATC	3 cut(s)	56, 204, 275
LmnI	GCTCC	3 cut(s)	226, 289, 412
Lsp1109I	GCAGC	2 cut(s)	121, 364
MaeI	CTAG	2 cut(s)	424, 578
MaeII	ACGT	2 cut(s)	262, 336
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	3 cut(s)	58, 206, 277
MboI	GATC	3 cut(s)	56, 204, 275
MboII	GAAGA	2 cut(s)	36, 510
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	2 cut(s)	231, 286
Mly113I	GGCGCC	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	4 cut(s)	200, 409, 454, 489
MspR9I	CCNGG	2 cut(s)	410, 438
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	4 cut(s)	118, 374, 400, 573
NarI	GGCGCC	1 cut(s)	567
NciI	CCSGG	1 cut(s)	410
NdeII	GATC	3 cut(s)	56, 204, 275
NlaIII	CATG	2 cut(s)	48, 125
NlaIV	GGNNCC	1 cut(s)	568
NmeAIII	GCCGAG	2 cut(s)	243, 508
NmuCI	GTSAC	1 cut(s)	170
NruI	TCGCGA	1 cut(s)	280
NspI	RCATGY	2 cut(s)	48, 125
PaeI	GCATGC	2 cut(s)	48, 125
PaqCI	CACCTGC	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	4 cut(s)	246, 268, 277, 480
PfeI	GAWTC	1 cut(s)	27
PkrI	GCNGC	5 cut(s)	75, 111, 116, 152, 379
PleI	GAGTC	1 cut(s)	462
PluTI	GGCGCC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	146
RruI	TCGCGA	1 cut(s)	280
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	286
SatI	GCNGC	5 cut(s)	74, 110, 115, 151, 378
Sau3AI	GATC	3 cut(s)	56, 204, 275
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	2 cut(s)	410, 438
SduI	GDGCHC	2 cut(s)	231, 286
SfoI	GGCGCC	1 cut(s)	568
SphI	GCATGC	2 cut(s)	48, 125
SsiI	CCGC	5 cut(s)	73, 91, 115, 150, 294
SspDI	GGCGCC	1 cut(s)	566
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	2 cut(s)	424, 578
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	2 cut(s)	408, 436
StyI	CCWWGG	1 cut(s)	381
TaiI	ACGT	2 cut(s)	265, 339
TaqI	TCGA	4 cut(s)	12, 160, 307, 390
TauI	GCSGC	3 cut(s)	76, 117, 153
TfiI	GAWTC	1 cut(s)	27
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	2 cut(s)	109, 377
Tsp45I	GTSAC	1 cut(s)	170
TspRI	CASTG	1 cut(s)	328
XceI	RCATGY	2 cut(s)	48, 125
XspI	CTAG	2 cut(s)	424, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.