Rh7AG458200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011621
Physical Location & Seq
Reverse (-)
62930044 .. 62934665
4622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG458200.1

Sequence Viewer

Length: 402 bp
ATGGGTGATTCTGGGTTTGATGTTTCAGGGTTGAATCTCCTCCCGGAGGTTGCAGATCTTGTTGGAATCAAGATCTTGCTAGCTTTGATTCCAACACAAGGGCTTCAGATGCTGATGGAGTTCAAGATTATGAAGAAGAAAGGCTTGCTGGCGGCACATTTGGAGAAGGCCTTCTTCATTCCCAAGAAGAAAAGCTCCAAGTTTGAAGACTCTACTGGGGTGAGCTCAGTCAAAACTGAGGAGAGTGCTCGATTTATACACGTTTCTGATTCATTGATTGTGGAGTTTGGAAGTCAAACTCTGTCCCACCGTTGTTCCTTCTTCAAAAAGATGAACGCTGTGAAAGCTTTACCACTGATGGCCTCGCTGCTATTGCTACCAATTGTAGTTTACGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.56

Weight (kDa)

9.27

Isoelectric Point (pI)

28.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 46, 98
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 4 cut(s) 34, 124, 206, 325
AluBI AGCT 4 cut(s) 83, 195, 225, 347
AluI AGCT 4 cut(s) 83, 195, 225, 347
Alw21I GWGCWC 2 cut(s) 227, 250
AlwNI CAGNNNCTG 1 cut(s) 112
AoxI GGCC 2 cut(s) 168, 360
ApeKI GCWGC 1 cut(s) 367
Asp700I GAANNNNTTC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 17, 232
AsuNHI GCTAGC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 2 cut(s) 227, 250
BbvI GCAGC 1 cut(s) 354
BccI CCATC 2 cut(s) 109, 352
BcnI CCSGG 1 cut(s) 44
BfaI CTAG 1 cut(s) 80
BglII AGATCT 2 cut(s) 55, 72
BisI GCNGC 2 cut(s) 153, 368
BlsI GCNGC 2 cut(s) 154, 369
Bme1390I CCNGG 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 99
BmtI GCTAGC 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 44
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 98
Bse1I ACTGG 1 cut(s) 220
BseLI CCNNNNNNNGG 2 cut(s) 46, 98
BseMII CTCAG 2 cut(s) 228, 240
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 2 cut(s) 29, 254
BseXI GCAGC 1 cut(s) 354
BshFI GGCC 2 cut(s) 170, 362
BsiHKAI GWGCWC 2 cut(s) 227, 250
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 46, 98
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 2 cut(s) 170, 362
Bsp1286I GDGCHC 2 cut(s) 227, 250
Bsp143I GATC 2 cut(s) 55, 72
BspACI CCGC 1 cut(s) 152
BspANI GGCC 2 cut(s) 170, 362
BspCNI CTCAG 2 cut(s) 229, 239
BspOI GCTAGC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 220
BssMI GATC 2 cut(s) 55, 72
Bst4CI ACNGT 1 cut(s) 311
BstC8I GCNNGC 3 cut(s) 81, 146, 150
BstDEI CTNAG 2 cut(s) 226, 237
BstENI CCTNNNNNAGG 1 cut(s) 44
BstKTI GATC 2 cut(s) 58, 75
BstMBI GATC 2 cut(s) 55, 72
BstMWI GCNNNNNNNGC 3 cut(s) 109, 344, 373
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 354
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 2 cut(s) 55, 72
BstYI RGATCY 2 cut(s) 55, 72
BsuRI GGCC 2 cut(s) 170, 362
BtsIMutI CAGTG 1 cut(s) 353
Cac8I GCNNGC 3 cut(s) 81, 146, 150
CaiI CAGNNNCTG 1 cut(s) 112
CviJI RGCY 8 cut(s) 83, 103, 144, 170, 195, 225, 347, 362
CviKI_1 RGCY 8 cut(s) 83, 103, 144, 170, 195, 225, 347, 362
DdeI CTNAG 2 cut(s) 226, 237
DpnI GATC 2 cut(s) 57, 74
DpnII GATC 2 cut(s) 55, 72
Ecl136II GAGCTC 1 cut(s) 225
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 225
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 227
FaiI YATR 2 cut(s) 131, 257
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 158, 190
FaqI GGGAC 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 153, 368
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 2 cut(s) 153, 368
FspBI CTAG 1 cut(s) 80
GluI GCNGC 2 cut(s) 153, 368
HaeIII GGCC 2 cut(s) 170, 362
HapII CCGG 1 cut(s) 44
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 6 cut(s) 8, 34, 66, 88, 209, 269
HpaII CCGG 1 cut(s) 44
HphI GGTGA 2 cut(s) 17, 232
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 108, 268
Hpy188III TCNNGA 2 cut(s) 70, 124
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 3 cut(s) 160, 181, 328
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 344, 373
HpyF3I CTNAG 2 cut(s) 226, 237
HpySE526I ACGT 1 cut(s) 261
Kzo9I GATC 2 cut(s) 55, 72
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 4 cut(s) 12, 57, 134, 201
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 261
MalI GATC 2 cut(s) 57, 74
MboI GATC 2 cut(s) 55, 72
MboII GAAGA 6 cut(s) 145, 148, 166, 199, 218, 313
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 2 cut(s) 55, 72
MhlI GDGCHC 2 cut(s) 227, 250
MluCI AATT 1 cut(s) 381
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 2 cut(s) 43, 116
MnlI CCTC 4 cut(s) 40, 50, 232, 373
MroXI GAANNNNTTC 1 cut(s) 170
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 44
MunI CAATTG 1 cut(s) 381
MwoI GCNNNNNNNGC 3 cut(s) 109, 344, 373
NciI CCSGG 1 cut(s) 44
NdeII GATC 2 cut(s) 55, 72
NheI GCTAGC 1 cut(s) 79
PceI AGGCCT 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 5 cut(s) 8, 34, 66, 88, 269
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 2 cut(s) 154, 369
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 112
PsuI RGATCY 2 cut(s) 55, 72
SacI GAGCTC 1 cut(s) 227
SatI GCNGC 2 cut(s) 153, 368
Sau3AI GATC 2 cut(s) 55, 72
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 2 cut(s) 227, 250
SetI ASST 6 cut(s) 51, 85, 197, 227, 264, 349
SfaNI GCATC 1 cut(s) 99
Sse9I AATT 1 cut(s) 381
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 1 cut(s) 152
SspMI CTAG 1 cut(s) 80
SstI GAGCTC 1 cut(s) 227
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 250
TasI AATT 1 cut(s) 381
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 5 cut(s) 8, 34, 66, 88, 269
TscAI CASTG 1 cut(s) 360
TseI GCWGC 1 cut(s) 367
TspDTI ATGAA 4 cut(s) 146, 166, 261, 347
TspRI CASTG 1 cut(s) 360
XagI CCTNNNNNAGG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.