Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008558.1

Orthogroup ID

OG0011621

Physical Location & Seq

Genomic Coordinates Reverse (-)

15600 .. 16052

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008558.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ctggcggccattttcgactggtttgtcaccgagaaaaagcacaacaccaacaagcggagatccaaacccagccgagtgaggagcacgagattgtcgctgtcgtcgttctcctgccacgttcccgacgaggatcgagagctccttctcccgcctgaggccgtcgatgtgtcatcagcagtgccggatacaacgtcgttcaaggctgacaagagcgttgactggcaggtgtcgctgccaagggtgtcgagcaggagtatctacgccgggagcttgtactctaggacgacgaccctggacaggaacttctccggcaaggtcaaggactcgtcggcgacgccgaggccggtggaggaagaggaggaggaggaggaggaggaggaggaggtggtgggagtggaggcgagtagggatagcttggcacagaggaaaggggtggaggcgcctagcgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EDR1 Pkinase_Tyr

Protein Analysis

150

Amino Acids

16.73

Weight (kDa)

5.09

Isoelectric Point (pI)

74.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011621)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000868
rosa_multiflora	Rmu_sc0002933.1_g000011 Rmu_sc0003707.1_g000002 Rmu_sc0004180.1_g000020 Rmu_sc0008558.1_g000002 Rmu_sc0030499.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057770 Rroxscaffold_4G00303260 Rroxscaffold_4G00323430
rosa_rugosa	Rorug02G0301700
rosa_samantha	Rh2AG433000 Rh2AG531900 Rh2CG367300 Rh3AG285900 Rh3AG292900 Rh4AG110800 Rh7AG458200
rosa_wichuraiana	Rw3G023850 Rw3G029550 Rw4G003450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
AasI	GACNNNNNNGTC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	439
AciI	CCGC	3 cut(s)	5, 55, 149
AclWI	GGATC	2 cut(s)	54, 138
AcoI	YGGCCR	1 cut(s)	6
AcyI	GRCGYC	2 cut(s)	335, 440
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	3 cut(s)	54, 154, 297
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	3 cut(s)	139, 270, 414
AluI	AGCT	3 cut(s)	139, 270, 414
Alw21I	GWGCWC	2 cut(s)	86, 141
AlwI	GGATC	2 cut(s)	54, 138
AoxI	GGCC	3 cut(s)	6, 156, 341
ApeKI	GCWGC	1 cut(s)	232
AspLEI	GCGC	2 cut(s)	442, 449
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	19
AxyI	CCTNAGG	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	85
Bbv12I	GWGCWC	2 cut(s)	86, 141
BbvI	GCAGC	1 cut(s)	219
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	293
BciVI	GTATCC	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	265
BfaI	CTAG	3 cut(s)	279, 444, 451
BfoI	RGCGCY	2 cut(s)	443, 450
BfuAI	ACCTGC	1 cut(s)	214
BfuI	GTATCC	1 cut(s)	178
BisI	GCNGC	2 cut(s)	6, 233
BlsI	GCNGC	2 cut(s)	7, 234
Bme1390I	CCNGG	2 cut(s)	265, 293
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	2 cut(s)	265, 293
BpuMI	CCSGG	1 cut(s)	265
BsaHI	GRCGYC	2 cut(s)	335, 440
BsaJI	CCNNGG	3 cut(s)	236, 291, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 154, 297
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	23, 224
Bse21I	CCTNAGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	3 cut(s)	236, 291, 338
BseLI	CCNNNNNNNGG	3 cut(s)	54, 154, 297
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	23, 224
BseXI	GCAGC	1 cut(s)	219
BseYI	CCCAGC	1 cut(s)	68
BshFI	GGCC	3 cut(s)	8, 158, 343
BshNI	GGYRCC	1 cut(s)	439
BsiHKAI	GWGCWC	2 cut(s)	86, 141
BsiSI	CCGG	4 cut(s)	182, 264, 309, 344
BslI	CCNNNNNNNGG	3 cut(s)	54, 154, 297
BsnI	GGCC	3 cut(s)	8, 158, 343
Bsp1286I	GDGCHC	2 cut(s)	86, 141
Bsp143I	GATC	2 cut(s)	59, 130
BspACI	CCGC	3 cut(s)	5, 55, 149
BspANI	GGCC	3 cut(s)	8, 158, 343
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	441
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	2 cut(s)	54, 138
BspT107I	GGYRCC	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	2 cut(s)	23, 224
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	3 cut(s)	236, 291, 338
BssMI	GATC	2 cut(s)	59, 130
BssNI	GRCGYC	2 cut(s)	335, 440
BssSI	CACGAG	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	348
BstACI	GRCGYC	2 cut(s)	335, 440
BstDEI	CTNAG	1 cut(s)	153
BstH2I	RGCGCY	2 cut(s)	443, 450
BstHHI	GCGC	2 cut(s)	442, 449
BstKTI	GATC	2 cut(s)	62, 133
BstMBI	GATC	2 cut(s)	59, 130
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 446
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	263, 291
BstV1I	GCAGC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
Bsu36I	CCTNAGG	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	3 cut(s)	8, 158, 343
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	214
CfoI	GCGC	2 cut(s)	442, 449
Cfr10I	RCCGGY	1 cut(s)	343
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	274
CviJI	RGCY	8 cut(s)	8, 72, 139, 158, 203, 270, 343, 414
CviKI_1	RGCY	8 cut(s)	8, 72, 139, 158, 203, 270, 343, 414
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	153
DinI	GGCGCC	1 cut(s)	441
DpnI	GATC	2 cut(s)	61, 132
DpnII	GATC	2 cut(s)	59, 130
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	139
Eco81I	CCTNAGG	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	441
EheI	GGCGCC	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	236
FauI	CCCGC	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	6, 233
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	6, 233
FspBI	CTAG	3 cut(s)	279, 444, 451
GlaI	GCGC	2 cut(s)	441, 448
GluI	GCNGC	2 cut(s)	6, 233
GsaI	CCCAGC	1 cut(s)	72
HaeII	RGCGCY	2 cut(s)	443, 450
HaeIII	GGCC	3 cut(s)	8, 158, 343
HapII	CCGG	4 cut(s)	182, 264, 309, 344
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	2 cut(s)	442, 449
Hin1I	GRCGYC	2 cut(s)	335, 440
Hin6I	GCGC	2 cut(s)	440, 447
HinP1I	GCGC	2 cut(s)	440, 447
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	4 cut(s)	182, 264, 309, 344
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	122, 134
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	7 cut(s)	106, 128, 164, 196, 289, 331, 337
HpyAV	CCTTC	1 cut(s)	152
HpyCH4IV	ACGT	2 cut(s)	117, 191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 446
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	2 cut(s)	117, 191
Hsp92I	GRCGYC	2 cut(s)	335, 440
HspAI	GCGC	2 cut(s)	440, 447
KasI	GGCGCC	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	59, 130
LmnI	GCTCC	3 cut(s)	81, 144, 267
Lsp1109I	GCAGC	1 cut(s)	219
MaeI	CTAG	3 cut(s)	279, 444, 451
MaeII	ACGT	2 cut(s)	117, 191
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	2 cut(s)	61, 132
MboI	GATC	2 cut(s)	59, 130
MboII	GAAGA	1 cut(s)	365
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	2 cut(s)	86, 141
Mly113I	GGCGCC	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	317
MspI	CCGG	4 cut(s)	182, 264, 309, 344
MspR9I	CCNGG	2 cut(s)	265, 293
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	229, 446
NarI	GGCGCC	1 cut(s)	440
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	2 cut(s)	59, 130
NlaIV	GGNNCC	1 cut(s)	441
NmeAIII	GCCGAG	2 cut(s)	98, 363
NmuCI	GTSAC	1 cut(s)	25
PaqCI	CACCTGC	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	3 cut(s)	101, 123, 335
PkrI	GCNGC	2 cut(s)	7, 234
PleI	GAGTC	1 cut(s)	317
PluTI	GGCGCC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	441
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SacI	GAGCTC	1 cut(s)	141
SatI	GCNGC	2 cut(s)	6, 233
Sau3AI	GATC	2 cut(s)	59, 130
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	265, 293
SduI	GDGCHC	2 cut(s)	86, 141
SetI	ASST	8 cut(s)	120, 141, 194, 228, 272, 318, 387, 416
SfoI	GGCGCC	1 cut(s)	441
SsiI	CCGC	3 cut(s)	5, 55, 149
SspDI	GGCGCC	1 cut(s)	439
SspMI	CTAG	3 cut(s)	279, 444, 451
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	263, 291
StyI	CCWWGG	1 cut(s)	236
TaiI	ACGT	2 cut(s)	120, 194
TaqI	TCGA	4 cut(s)	15, 133, 162, 245
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	25
TspRI	CASTG	1 cut(s)	183
XspI	CTAG	3 cut(s)	279, 444, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.