Rw3G029550

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011621
Physical Location & Seq
Reverse (-)
45676017 .. 45678974
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029550.1

Sequence Viewer

Length: 576 bp
ATGGGTGATTCTAGGTTTGATGTTTTAGGGTTGAATCTCCTCCCGGAGGTTGCAGATCTTGTTGGAATCAAGATCTTGCTGGCTTGGATTCCAACACAAGGGCTTCAGATGCTGATGGAGTTCAAGATTATGAAGAAGAAAGGCTTGCTGGCGGCACATCTGGAGAAGGCCTTCTTCATTCCCAAGAAGAAAAGCTCCAAGTTTGAAGACTCTACTGGGGTGAGCTCAGTCAAAACTGAGGAGAGTGCTCGATTTATACACGATCGCGAGCTCCTTCTCCCACCTGAGGCCGTCGATGTGTCGTCAGCGGTGCTGGATATGATGTCGTTCAAGGCTGACATGAGCGTTGACCGGCAGGTGTCGCTACCGAGGGTGTCGAGCGGGAGTAGCTACGTCGGGAGCTTGTACTCTGGGATGACGACCCTGGACAGGAACTTCTCCGGCGACGTCAAGGACTCGTCAGCGACGACGAGGCCGGTGGAGGAAGAGGAGGAGGAGGAGGTGGTGGGAGTGGGAGTGGAGGCGAGTAGGGATAGCTTGGCGCAGAGGAACGGGGTGGAGGCGCCTAGCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

191

Amino Acids

20.79

Weight (kDa)

4.89

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
AatII GACGTC 1 cut(s) 450
Acc36I ACCTGC 1 cut(s) 346
AccB1I GGYRCC 1 cut(s) 562
AccBSI CCGCTC 1 cut(s) 381
AccII CGCG 1 cut(s) 267
AciI CCGC 3 cut(s) 152, 308, 381
AcuI CTGAAG 1 cut(s) 89
AcyI GRCGYC 2 cut(s) 447, 563
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 4 cut(s) 46, 98, 286, 429
AgsI TTSAA 4 cut(s) 34, 124, 206, 331
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 6 cut(s) 195, 225, 271, 390, 402, 537
AluI AGCT 6 cut(s) 195, 225, 271, 390, 402, 537
Alw21I GWGCWC 3 cut(s) 227, 250, 273
AlwNI CAGNNNCTG 1 cut(s) 112
AoxI GGCC 3 cut(s) 168, 288, 473
Asp700I GAANNNNTTC 1 cut(s) 170
AspLEI GCGC 3 cut(s) 544, 565, 572
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 17, 232
AxyI CCTNAGG 1 cut(s) 285
BanI GGYRCC 1 cut(s) 562
BanII GRGCYC 2 cut(s) 227, 273
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 3 cut(s) 227, 250, 273
BccI CCATC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 425
BcnI CCSGG 1 cut(s) 44
BfaI CTAG 3 cut(s) 12, 567, 574
BfoI RGCGCY 2 cut(s) 566, 573
BfuAI ACCTGC 1 cut(s) 346
BglII AGATCT 2 cut(s) 55, 72
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 2 cut(s) 44, 425
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 2 cut(s) 44, 425
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 44
BsaHI GRCGYC 2 cut(s) 447, 563
BsaJI CCNNGG 2 cut(s) 368, 423
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 98, 286, 429
Bse118I RCCGGY 2 cut(s) 351, 475
Bse1I ACTGG 1 cut(s) 220
Bse21I CCTNAGG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 2 cut(s) 368, 423
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 4 cut(s) 46, 98, 286, 429
BseMII CTCAG 3 cut(s) 228, 240, 276
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 6 cut(s) 29, 254, 503, 506, 509, 512
Bsh1236I CGCG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 3 cut(s) 170, 290, 475
BshNI GGYRCC 1 cut(s) 562
BsiEI CGRYCG 1 cut(s) 265
BsiHKAI GWGCWC 3 cut(s) 227, 250, 273
BsiSI CCGG 4 cut(s) 44, 352, 441, 476
BslI CCNNNNNNNGG 4 cut(s) 46, 98, 286, 429
BsnI GGCC 3 cut(s) 170, 290, 475
Bsp1286I GDGCHC 3 cut(s) 227, 250, 273
Bsp143I GATC 3 cut(s) 55, 72, 262
Bsp68I TCGCGA 1 cut(s) 267
BspACI CCGC 3 cut(s) 152, 308, 381
BspANI GGCC 3 cut(s) 170, 290, 475
BspCNI CTCAG 3 cut(s) 229, 239, 277
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 564
BspMI ACCTGC 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 562
BsrBI CCGCTC 1 cut(s) 381
BsrFI RCCGGY 2 cut(s) 351, 475
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 2 cut(s) 351, 475
BssECI CCNNGG 2 cut(s) 368, 423
BssMI GATC 3 cut(s) 55, 72, 262
BssNI GRCGYC 2 cut(s) 447, 563
Bst2UI CCWGG 1 cut(s) 425
Bst6I CTCTTC 1 cut(s) 480
BstACI GRCGYC 2 cut(s) 447, 563
BstC8I GCNNGC 4 cut(s) 81, 146, 150, 269
BstDEI CTNAG 3 cut(s) 226, 237, 285
BstENI CCTNNNNNAGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 420
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 2 cut(s) 566, 573
BstHHI GCGC 3 cut(s) 544, 565, 572
BstKTI GATC 3 cut(s) 58, 75, 265
BstMBI GATC 3 cut(s) 55, 72, 262
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 4 cut(s) 109, 361, 387, 569
BstNI CCWGG 1 cut(s) 425
BstSCI CCNGG 2 cut(s) 42, 423
BstUI CGCG 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 2 cut(s) 55, 72
BstYI RGATCY 2 cut(s) 55, 72
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 3 cut(s) 170, 290, 475
BtsCI GGATG 1 cut(s) 420
BtuMI TCGCGA 1 cut(s) 267
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 4 cut(s) 81, 146, 150, 269
CaiI CAGNNNCTG 1 cut(s) 112
CfoI GCGC 3 cut(s) 544, 565, 572
Cfr10I RCCGGY 2 cut(s) 351, 475
Csp6I GTAC 1 cut(s) 406
CviAII CATG 1 cut(s) 340
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 3 cut(s) 226, 237, 285
DinI GGCGCC 1 cut(s) 564
DpnI GATC 3 cut(s) 57, 74, 264
DpnII GATC 3 cut(s) 55, 72, 262
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Ecl136II GAGCTC 2 cut(s) 225, 271
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 2 cut(s) 227, 273
Eco53kI GAGCTC 2 cut(s) 225, 271
Eco57I CTGAAG 1 cut(s) 89
Eco81I CCTNAGG 1 cut(s) 285
EcoICRI GAGCTC 2 cut(s) 225, 271
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 423
EcoT38I GRGCYC 2 cut(s) 227, 273
EgeI GGCGCC 1 cut(s) 564
EheI GGCGCC 1 cut(s) 564
FaeI CATG 1 cut(s) 343
FaiI YATR 4 cut(s) 131, 257, 320, 341
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 158, 190
FatI CATG 1 cut(s) 339
FauI CCCGC 1 cut(s) 374
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 427
FriOI GRGCYC 2 cut(s) 227, 273
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 3 cut(s) 12, 567, 574
GlaI GCGC 3 cut(s) 543, 564, 571
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 2 cut(s) 566, 573
HaeIII GGCC 3 cut(s) 170, 290, 475
HapII CCGG 4 cut(s) 44, 352, 441, 476
HhaI GCGC 3 cut(s) 544, 565, 572
Hin1I GRCGYC 2 cut(s) 447, 563
Hin1II CATG 1 cut(s) 343
Hin6I GCGC 3 cut(s) 542, 563, 570
HinP1I GCGC 3 cut(s) 542, 563, 570
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 6 cut(s) 8, 34, 66, 88, 209, 455
HpaII CCGG 4 cut(s) 44, 352, 441, 476
HphI GGTGA 2 cut(s) 17, 232
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 5 cut(s) 70, 124, 161, 266, 397
Hpy8I GTNNAC 1 cut(s) 349
Hpy99I CGWCG 5 cut(s) 296, 398, 449, 469, 472
HpyAV CCTTC 3 cut(s) 160, 181, 284
HpyCH4IV ACGT 2 cut(s) 393, 447
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 361, 387, 569
HpyF3I CTNAG 3 cut(s) 226, 237, 285
HpySE526I ACGT 2 cut(s) 393, 447
Hsp92I GRCGYC 2 cut(s) 447, 563
Hsp92II CATG 1 cut(s) 343
HspAI GCGC 3 cut(s) 542, 563, 570
KasI GGCGCC 1 cut(s) 562
Kzo9I GATC 3 cut(s) 55, 72, 262
LmnI GCTCC 3 cut(s) 200, 276, 399
LweI GCATC 1 cut(s) 99
MaeI CTAG 3 cut(s) 12, 567, 574
MaeII ACGT 2 cut(s) 393, 447
MalI GATC 3 cut(s) 57, 74, 264
MbiI CCGCTC 1 cut(s) 381
MboI GATC 3 cut(s) 55, 72, 262
MboII GAAGA 6 cut(s) 145, 148, 166, 199, 218, 497
MflI RGATCY 2 cut(s) 55, 72
MhlI GDGCHC 3 cut(s) 227, 250, 273
Mly113I GGCGCC 1 cut(s) 563
MlyI GAGTC 2 cut(s) 203, 449
MmeI TCCRAC 2 cut(s) 43, 116
MroXI GAANNNNTTC 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 4 cut(s) 44, 352, 441, 476
MspR9I CCNGG 2 cut(s) 44, 425
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 4 cut(s) 109, 361, 387, 569
NarI GGCGCC 1 cut(s) 563
NciI CCSGG 1 cut(s) 44
NdeII GATC 3 cut(s) 55, 72, 262
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 1 cut(s) 564
NruI TCGCGA 1 cut(s) 267
PaqCI CACCTGC 1 cut(s) 346
PceI AGGCCT 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 464
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 4 cut(s) 8, 34, 66, 88
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 1 cut(s) 154
Ple19I CGATCG 1 cut(s) 265
PleI GAGTC 2 cut(s) 203, 449
PluTI GGCGCC 1 cut(s) 566
PpsI GAGTC 2 cut(s) 203, 449
Psp124BI GAGCTC 2 cut(s) 227, 273
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 564
PstNI CAGNNNCTG 1 cut(s) 112
PsuI RGATCY 2 cut(s) 55, 72
PvuI CGATCG 1 cut(s) 265
RruI TCGCGA 1 cut(s) 267
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SacI GAGCTC 2 cut(s) 227, 273
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 3 cut(s) 55, 72, 262
SchI GAGTC 2 cut(s) 203, 449
ScrFI CCNGG 2 cut(s) 44, 425
SduI GDGCHC 3 cut(s) 227, 250, 273
SfaNI GCATC 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 564
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 3 cut(s) 152, 308, 381
SspDI GGCGCC 1 cut(s) 562
SspMI CTAG 3 cut(s) 12, 567, 574
SstI GAGCTC 2 cut(s) 227, 273
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 42, 423
TaiI ACGT 2 cut(s) 396, 450
TaqI TCGA 3 cut(s) 250, 294, 377
TatI WGTACW 1 cut(s) 405
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 4 cut(s) 8, 34, 66, 88
TspDTI ATGAA 2 cut(s) 146, 166
XagI CCTNNNNNAGG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 3 cut(s) 12, 567, 574
ZraI GACGTC 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.