Rh2AG433000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011621
Physical Location & Seq
Forward (+)
64298113 .. 64298491
379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG433000.1

Sequence Viewer

Length: 297 bp
ATGGGTGATTCTGGGTTTGATGTTTCAGGGTTGAATCTCCTCCAAGAGGTTGTAGATCTTGTTGGAATCAAGATCTTGCTGGCTTTTATTCCAACACAAGGGCTTCAGATGCTGATGGAGTTCAAGATTATGAAGAAGAAAGGCTTGCTGGCGGCACATCTGGAGAAGGCCTTCTTCATTCCCAAGAAGAAAAGCTCCAAGTTTGAAGACTCTACTAGGGTGAGCTCAGTCAAAACTGAGGAGAGTGCTCGATTTATACACGTTTCTGGTGGGTTGCTTCAATTCTCACTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.83

Weight (kDa)

9.35

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 46, 98
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 4 cut(s) 34, 124, 206, 281
AluBI AGCT 2 cut(s) 195, 225
AluI AGCT 2 cut(s) 195, 225
Alw21I GWGCWC 2 cut(s) 227, 250
AlwNI CAGNNNCTG 1 cut(s) 112
AoxI GGCC 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 17, 232
BanII GRGCYC 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 2 cut(s) 227, 250
BccI CCATC 1 cut(s) 109
BfaI CTAG 1 cut(s) 216
BglII AGATCT 2 cut(s) 55, 72
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 98
BseLI CCNNNNNNNGG 2 cut(s) 46, 98
BseMII CTCAG 2 cut(s) 228, 240
BseRI GAGGAG 2 cut(s) 29, 254
BshFI GGCC 1 cut(s) 170
BsiHKAI GWGCWC 2 cut(s) 227, 250
BslI CCNNNNNNNGG 2 cut(s) 46, 98
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 227, 250
Bsp143I GATC 2 cut(s) 55, 72
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 229, 239
BssMI GATC 2 cut(s) 55, 72
BstC8I GCNNGC 3 cut(s) 81, 146, 150
BstDEI CTNAG 2 cut(s) 226, 237
BstENI CCTNNNNNAGG 1 cut(s) 44
BstKTI GATC 2 cut(s) 58, 75
BstMBI GATC 2 cut(s) 55, 72
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 2 cut(s) 55, 72
BstYI RGATCY 2 cut(s) 55, 72
BsuRI GGCC 1 cut(s) 170
Cac8I GCNNGC 3 cut(s) 81, 146, 150
CaiI CAGNNNCTG 1 cut(s) 112
CviJI RGCY 6 cut(s) 83, 103, 144, 170, 195, 225
CviKI_1 RGCY 6 cut(s) 83, 103, 144, 170, 195, 225
DdeI CTNAG 2 cut(s) 226, 237
DpnI GATC 2 cut(s) 57, 74
DpnII GATC 2 cut(s) 55, 72
Ecl136II GAGCTC 1 cut(s) 225
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 225
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 227
FaiI YATR 2 cut(s) 131, 257
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 158, 190
Fnu4HI GCNGC 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 216
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 182
HaeIII GGCC 1 cut(s) 170
HinfI GANTC 4 cut(s) 8, 34, 66, 209
HphI GGTGA 2 cut(s) 17, 232
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 70, 124, 161
HpyAV CCTTC 2 cut(s) 160, 181
HpyCH4IV ACGT 1 cut(s) 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 2 cut(s) 226, 237
HpySE526I ACGT 1 cut(s) 261
Kzo9I GATC 2 cut(s) 55, 72
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 5 cut(s) 12, 65, 134, 146, 252
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 261
MalI GATC 2 cut(s) 57, 74
MboI GATC 2 cut(s) 55, 72
MboII GAAGA 5 cut(s) 145, 148, 166, 199, 218
MflI RGATCY 2 cut(s) 55, 72
MhlI GDGCHC 2 cut(s) 227, 250
MluCI AATT 1 cut(s) 281
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 2 cut(s) 43, 116
MnlI CCTC 3 cut(s) 40, 50, 232
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 1 cut(s) 295
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 2 cut(s) 55, 72
PceI AGGCCT 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 3 cut(s) 8, 34, 66
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 112
PsuI RGATCY 2 cut(s) 55, 72
SacI GAGCTC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 55, 72
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 2 cut(s) 227, 250
SetI ASST 4 cut(s) 51, 197, 227, 264
SfaNI GCATC 1 cut(s) 99
Sse9I AATT 1 cut(s) 281
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 1 cut(s) 152
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 1 cut(s) 227
StuI AGGCCT 1 cut(s) 170
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 250
TasI AATT 1 cut(s) 281
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 3 cut(s) 8, 34, 66
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 146, 166
XagI CCTNNNNNAGG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.