No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000000868 |
| rosa_multiflora | Rmu_sc0002933.1_g000011 Rmu_sc0003707.1_g000002 Rmu_sc0004180.1_g000020 Rmu_sc0008558.1_g000002 Rmu_sc0030499.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00057770 Rroxscaffold_4G00303260 Rroxscaffold_4G00323430 |
| rosa_rugosa | Rorug02G0301700 |
| rosa_samantha | Rh2AG433000 Rh2AG531900 Rh2CG367300 Rh3AG285900 Rh3AG292900 Rh4AG110800 Rh7AG458200 |
| rosa_wichuraiana | Rw3G023850 Rw3G029550 Rw4G003450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 153 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 267 |
| AgsI | TTSAA | 3 cut(s) | 34, 108, 125 |
| AluBI | AGCT | 1 cut(s) | 228 |
| AluI | AGCT | 1 cut(s) | 228 |
| AoxI | GGCC | 1 cut(s) | 241 |
| ApeKI | GCWGC | 1 cut(s) | 79 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 171 |
| AspS9I | GGNCC | 1 cut(s) | 196 |
| AsuC2I | CCSGG | 1 cut(s) | 44 |
| AsuHPI | GGTGA | 1 cut(s) | 17 |
| AvaII | GGWCC | 1 cut(s) | 196 |
| BbsI | GAAGAC | 1 cut(s) | 174 |
| BbvI | GCAGC | 1 cut(s) | 66 |
| BccI | CCATC | 2 cut(s) | 110, 233 |
| BcnI | CCSGG | 1 cut(s) | 44 |
| BglII | AGATCT | 1 cut(s) | 72 |
| BisI | GCNGC | 2 cut(s) | 80, 154 |
| BlsI | GCNGC | 2 cut(s) | 81, 155 |
| Bme1390I | CCNGG | 1 cut(s) | 44 |
| Bme18I | GGWCC | 1 cut(s) | 196 |
| BmgT120I | GGNCC | 1 cut(s) | 196 |
| BmrFI | CCNGG | 1 cut(s) | 44 |
| BpiI | GAAGAC | 1 cut(s) | 174 |
| BpmI | CTGGAG | 1 cut(s) | 183 |
| BpuMI | CCSGG | 1 cut(s) | 44 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 267 |
| Bse1I | ACTGG | 1 cut(s) | 199 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 267 |
| BseNI | ACTGG | 1 cut(s) | 199 |
| BseRI | GAGGAG | 1 cut(s) | 29 |
| BseXI | GCAGC | 1 cut(s) | 66 |
| BshFI | GGCC | 1 cut(s) | 243 |
| BsiSI | CCGG | 1 cut(s) | 44 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 267 |
| BsnI | GGCC | 1 cut(s) | 243 |
| Bsp143I | GATC | 1 cut(s) | 72 |
| BspACI | CCGC | 1 cut(s) | 153 |
| BspANI | GGCC | 1 cut(s) | 243 |
| BsrI | ACTGG | 1 cut(s) | 199 |
| BssMI | GATC | 1 cut(s) | 72 |
| BstC8I | GCNNGC | 2 cut(s) | 147, 151 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstKTI | GATC | 1 cut(s) | 75 |
| BstMBI | GATC | 1 cut(s) | 72 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 110 |
| BstSCI | CCNGG | 1 cut(s) | 42 |
| BstV1I | GCAGC | 1 cut(s) | 66 |
| BstV2I | GAAGAC | 1 cut(s) | 174 |
| BstX2I | RGATCY | 1 cut(s) | 72 |
| BstYI | RGATCY | 1 cut(s) | 72 |
| BsuRI | GGCC | 1 cut(s) | 243 |
| BtsI | GCAGTG | 1 cut(s) | 246 |
| BtsIMutI | CAGTG | 2 cut(s) | 234, 246 |
| Cac8I | GCNNGC | 2 cut(s) | 147, 151 |
| Cfr13I | GGNCC | 1 cut(s) | 196 |
| CviJI | RGCY | 4 cut(s) | 104, 145, 228, 243 |
| CviKI_1 | RGCY | 4 cut(s) | 104, 145, 228, 243 |
| DpnI | GATC | 1 cut(s) | 74 |
| DpnII | GATC | 1 cut(s) | 72 |
| Eco47I | GGWCC | 1 cut(s) | 196 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| FaiI | YATR | 1 cut(s) | 132 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 129, 161, 159, 191 |
| Fnu4HI | GCNGC | 2 cut(s) | 80, 154 |
| Fsp4HI | GCNGC | 2 cut(s) | 80, 154 |
| GluI | GCNGC | 2 cut(s) | 80, 154 |
| GsuI | CTGGAG | 1 cut(s) | 183 |
| HaeIII | GGCC | 1 cut(s) | 243 |
| HapII | CCGG | 1 cut(s) | 44 |
| HindIII | AAGCTT | 1 cut(s) | 226 |
| HinfI | GANTC | 4 cut(s) | 8, 34, 66, 88 |
| HpaII | CCGG | 1 cut(s) | 44 |
| HphI | GGTGA | 1 cut(s) | 17 |
| Hpy188III | TCNNGA | 3 cut(s) | 70, 125, 162 |
| HpyAV | CCTTC | 1 cut(s) | 182 |
| HpyCH4V | TGCA | 1 cut(s) | 53 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 110 |
| Kzo9I | GATC | 1 cut(s) | 72 |
| LpnPI | CCDG | 5 cut(s) | 12, 57, 135, 147, 212 |
| Lsp1109I | GCAGC | 1 cut(s) | 66 |
| MalI | GATC | 1 cut(s) | 74 |
| MboI | GATC | 1 cut(s) | 72 |
| MboII | GAAGA | 5 cut(s) | 146, 149, 167, 179, 200 |
| MfeI | CAATTG | 1 cut(s) | 262 |
| MflI | RGATCY | 1 cut(s) | 72 |
| MluCI | AATT | 1 cut(s) | 262 |
| MmeI | TCCRAC | 1 cut(s) | 43 |
| MnlI | CCTC | 3 cut(s) | 40, 50, 254 |
| MroXI | GAANNNNTTC | 1 cut(s) | 171 |
| MspI | CCGG | 1 cut(s) | 44 |
| MspR9I | CCNGG | 1 cut(s) | 44 |
| MunI | CAATTG | 1 cut(s) | 262 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 110 |
| NciI | CCSGG | 1 cut(s) | 44 |
| NdeII | GATC | 1 cut(s) | 72 |
| PdmI | GAANNNNTTC | 1 cut(s) | 171 |
| PfeI | GAWTC | 4 cut(s) | 8, 34, 66, 88 |
| PfoI | TCCNGGA | 1 cut(s) | 42 |
| PkrI | GCNGC | 2 cut(s) | 81, 155 |
| PspPI | GGNCC | 1 cut(s) | 196 |
| PsuI | RGATCY | 1 cut(s) | 72 |
| SatI | GCNGC | 2 cut(s) | 80, 154 |
| Sau3AI | GATC | 1 cut(s) | 72 |
| Sau96I | GGNCC | 1 cut(s) | 196 |
| ScrFI | CCNGG | 1 cut(s) | 44 |
| SetI | ASST | 5 cut(s) | 51, 174, 198, 230, 272 |
| SinI | GGWCC | 1 cut(s) | 196 |
| Sse9I | AATT | 1 cut(s) | 262 |
| SsiI | CCGC | 1 cut(s) | 153 |
| StyD4I | CCNGG | 1 cut(s) | 42 |
| TasI | AATT | 1 cut(s) | 262 |
| TauI | GCSGC | 1 cut(s) | 156 |
| TfiI | GAWTC | 4 cut(s) | 8, 34, 66, 88 |
| TscAI | CASTG | 2 cut(s) | 241, 253 |
| TseI | GCWGC | 1 cut(s) | 79 |
| TspDTI | ATGAA | 2 cut(s) | 147, 167 |
| TspRI | CASTG | 2 cut(s) | 241, 253 |
| VpaK11BI | GGWCC | 1 cut(s) | 196 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XmnI | GAANNNNTTC | 1 cut(s) | 171 |