Rmu_sc0003133.1_g000012

DNA excision repair protein ERCC-6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003133.1
OG0003840
Physical Location & Seq
Forward (+)
57601 .. 67009
9409 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2439 bp
atggcggagaggaagagcagcaagaagccccaaagcctcaacgacagtcactatcgtctcctccaagacctcagttctgctcctcccaagccctccgagcaaggaaaggcgactaaggaaaggggagattgtgtggttgtgagggctaagaagacggataaacaagtggggaggcggggtggtggtagctataaagagtactatgattgtgatgaggataacgtggttgatgattctgttccggaggatgatggttctatcactctgagtggtctcacatatacttacaaattacctgggaagattgcaaagatgttgtttccgcatcagcgcgaaggcttgaagtggctatgggctctgcattgccagggtaagggaggaatcttaggagatgacatgggtttgggtaaaacaatgcagatttgtggctatttagccggattatttcattcacgcttgattaaaagggtaatggttgtggctcctaaaactctactttctcattggataaaggaattatcagctgtgggtctctcagacaagataagagaatactatgggacatgtacaaaagctcggaagtatgagcttcagtatgtacttcaggacaaaggcattcttctgactacttatgacattgtgcgagtcaactcaaaatctctaaaagggagtgactatattctcgatgatggaagtgaggatatgatatgggattatatgatacttgatgagggtcatctcataaagaatcccagtacacaaagagccaaaagtttgctagatataccctgttcacatcgcattatagtaagtggcacgccattgcaaaacaatctgaaggagttgtgggccttatttaacttctgttgccctgagctactgggtgataagaactggttcaaggaaagattcgagtcgcgcatttgtcgtggaaatgagaaaaatgcttcagatagggagaagtgtattggttccatggtagcacaggagctcagagaccgtattcaaccttttttcctgcgtcgcctgaagaatgaggtgtttaaggaggataatgaccaaacaaatgccacactttctaaaaagaatgagatcattgtttggctaagattaaccagctgtcagcggaaactttatgaagcatatttaaagagtgagctggttctttctgcttttgatgggtcaccattggctgcacttacgattctgaagaaaatatgtgatcatccacttctattgacaaagcgagctgctgaagatgtactagaagagttggattcattgcttaagccagatgatgcttgtatggcagaaaaactagcaatgcatatagcagatgttgctgagaaagaggagtttgatgagaaccatgcaaatctctcttgcaaaatatcttttataatgtcattgttggataacttgattcctgaggggcataatgttctcatcttttcccaaactagaaagatgcttaatcttattcaggaaacactgatatccagcggttacaagttccaacgcattgatggtaccacaaaagctactgaaagaattaggattgttaatgatttccaagaaggtattggggctcccatatttctcctgacttctcaagttggtggtttgggtcttacacttacaagagctgatcgtgtgatagtggttgatcctgcttggaacccgagtactgatagccagagtgtggatcgtgcatatcgaattgggcagaataaggatgtcattgtatatagattaatgacttgtgcgactgttgaagaaaagatatatagaaaacagatttacaaaggggggttgtttagaactgcaactgagcaaaaagagcagattcggtactttaatcaacaggatcttcgtgaacttttcagtctcccacaacaaggttttgatgtttcccttactcagaagcagctaaatgaggagcgtgatcaacagcacacaatggaagagtctttacaagcccatatagaattcttggaaactcaagggatagctggtgtcagtaaccacagtttactcttctccaagacagcaccacctctgccagaggtagacgcggagcaggaggaagttgaacggattagacgaactttacttgtgagaagctcaacttcaagttcgacacccgaatgtaatgtcaatggggctgaatatgctttcaagcctaaggatgtaatattaaataagaagatgccttcttcaccagctgatgcaggaaaaatgacaaaatcagagattaaagaaaacatcactaggctgtcacaaactcttgcaaataaggctttagtttcaagattacctgataagggacagaaaatacagaggcaaatttctgaattgaatgctgagcttcgtagactagacaaggacgtaattgacttggatgatgtgactgaggagcttaaaggagtggtgatataa

Protein Analysis

812

Amino Acids

92.0

Weight (kDa)

6.93

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 106 - 274 6.1e-07 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 109 - 410 1e-61 SNF2-related domain
AAA_34 PF13872 125 - 255 5.3e-07 P-loop containing NTP hydrolase pore-1
HDA2-3 PF11496 451 - 593 1e-06 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 466 - 575 3.8e-22 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1400
Acc65I GGTACC 1 cut(s) 1529
AccB1I GGYRCC 1 cut(s) 1529
AccB7I CCANNNNNTGG 1 cut(s) 1702
AccI GTMKAC 2 cut(s) 2070, 2374
AccII CGCG 3 cut(s) 333, 919, 2075
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 6 cut(s) 5, 175, 323, 1126, 1503, 2075
AclWI GGATC 3 cut(s) 1661, 1713, 1875
AcsI RAATTY 2 cut(s) 1988, 2346
AcuI CTGAAG 7 cut(s) 575, 587, 857, 933, 1049, 1229, 1275
AfaI GTAC 8 cut(s) 200, 568, 600, 757, 1263, 1531, 1687, 1853
AfiI CCNNNNNNNGG 4 cut(s) 373, 1702, 1898, 2324
AflII CTTAAG 1 cut(s) 1286
AflIII ACRYGT 1 cut(s) 563
AgsI TTSAA 9 cut(s) 343, 901, 1007, 1775, 2093, 2133, 2179, 2310, 2359
AjnI CCWGG 2 cut(s) 295, 366
Alw21I GWGCWC 1 cut(s) 993
Alw26I GTCTC 5 cut(s) 62, 278, 536, 990, 1892
AlwI GGATC 3 cut(s) 1661, 1713, 1875
Ama87I CYCGRG 1 cut(s) 1681
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 1 cut(s) 849
ApeKI GCWGC 4 cut(s) 18, 1193, 1250, 1927
ApoI RAATTY 2 cut(s) 1988, 2346
ArsI GACNNNNNNTTYG 2 cut(s) 2139, 2171
AseI ATTAAT 1 cut(s) 1754
Asp700I GAANNNNTTC 1 cut(s) 896
Asp718I GGTACC 1 cut(s) 1529
AspLEI GCGC 2 cut(s) 333, 921
AspS9I GGNCC 1 cut(s) 849
AsuHPI GGTGA 3 cut(s) 896, 1176, 2211
AvaI CYCGRG 1 cut(s) 1681
AxyI CCTNAGG 2 cut(s) 1428, 2184
BanI GGYRCC 1 cut(s) 1529
BanII GRGCYC 3 cut(s) 358, 993, 1591
BarI GAAGNNNNNNTAC 2 cut(s) 1956, 1988
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 993
BbvI GCAGC 4 cut(s) 30, 1180, 1237, 1939
BccI CCATC 4 cut(s) 245, 683, 1172, 1520
BciT130I CCWGG 2 cut(s) 297, 368
BclI TGATCA 2 cut(s) 1222, 1945
BcoDI GTCTC 5 cut(s) 62, 278, 536, 990, 1892
BfaI CTAG 6 cut(s) 779, 1265, 1319, 1461, 2271, 2378
BfrI CTTAAG 1 cut(s) 1286
BisI GCNGC 4 cut(s) 19, 1194, 1251, 1928
BlpI GCTNAGC 1 cut(s) 2364
BlsI GCNGC 4 cut(s) 20, 1195, 1252, 1929
BmcAI AGTACT 2 cut(s) 200, 1687
Bme1390I CCNGG 2 cut(s) 297, 368
BmeT110I CYCGRG 1 cut(s) 1681
BmgT120I GGNCC 1 cut(s) 849
BmiI GGNNCC 5 cut(s) 483, 973, 1531, 1590, 1679
BmrFI CCNGG 2 cut(s) 297, 368
BmrI ACTGGG 2 cut(s) 747, 890
BmsI GCATC 5 cut(s) 334, 1288, 1458, 2199, 2218
BmuI ACTGGG 2 cut(s) 747, 890
BpiI GAAGAC 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 873
Bpu1102I GCTNAGC 1 cut(s) 2364
BpuEI CTTGAG 2 cut(s) 1596, 1986
BsaI GGTCTC 3 cut(s) 278, 536, 990
BsaJI CCNNGG 3 cut(s) 296, 367, 975
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 163, 193
Bsc4I CCNNNNNNNGG 4 cut(s) 373, 1702, 1898, 2324
Bse1I ACTGG 3 cut(s) 753, 885, 899
Bse21I CCTNAGG 2 cut(s) 1428, 2184
Bse3DI GCAATG 4 cut(s) 361, 821, 1280, 1329
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 2 cut(s) 297, 368
BseDI CCNNGG 3 cut(s) 296, 367, 975
BseGI GGATG 5 cut(s) 253, 1225, 1741, 2194, 2407
BseLI CCNNNNNNNGG 4 cut(s) 373, 1702, 1898, 2324
BseMI GCAATG 4 cut(s) 361, 821, 1280, 1329
BseNI ACTGG 3 cut(s) 753, 885, 899
BseRI GAGGAG 5 cut(s) 50, 72, 1367, 1952, 2429
BseXI GCAGC 4 cut(s) 30, 1180, 1237, 1939
BsgI GTGCAG 1 cut(s) 1179
Bsh1236I CGCG 3 cut(s) 333, 919, 2075
BshFI GGCC 1 cut(s) 851
BshNI GGYRCC 1 cut(s) 1529
BsiHKAI GWGCWC 1 cut(s) 993
BsiHKCI CYCGRG 1 cut(s) 1681
BsiSI CCGG 2 cut(s) 242, 438
BslFI GGGAC 2 cut(s) 574, 2340
BslI CCNNNNNNNGG 4 cut(s) 373, 1702, 1898, 2324
BsmAI GTCTC 5 cut(s) 62, 278, 536, 990, 1892
BsmBI CGTCTC 1 cut(s) 62
BsmFI GGGAC 2 cut(s) 574, 2340
BsmI GAATGC 2 cut(s) 615, 2365
BsnI GGCC 1 cut(s) 851
Bso31I GGTCTC 3 cut(s) 278, 536, 990
BsoBI CYCGRG 1 cut(s) 1681
Bsp1286I GDGCHC 3 cut(s) 358, 993, 1591
Bsp13I TCCGGA 1 cut(s) 241
Bsp1407I TGTACA 1 cut(s) 566
Bsp143I GATC 7 cut(s) 1092, 1222, 1648, 1666, 1705, 1867, 1945
Bsp1720I GCTNAGC 1 cut(s) 2364
Bsp19I CCATGG 1 cut(s) 975
BspACI CCGC 6 cut(s) 5, 175, 323, 1126, 1503, 2075
BspANI GGCC 1 cut(s) 851
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 3 cut(s) 333, 919, 2075
BspLI GGNNCC 5 cut(s) 483, 973, 1531, 1590, 1679
BspPI GGATC 3 cut(s) 1661, 1713, 1875
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 1529
BspTI CTTAAG 1 cut(s) 1286
BspTNI GGTCTC 3 cut(s) 278, 536, 990
BsrDI GCAATG 4 cut(s) 361, 821, 1280, 1329
BsrGI TGTACA 1 cut(s) 566
BsrI ACTGG 3 cut(s) 753, 885, 899
BssECI CCNNGG 3 cut(s) 296, 367, 975
BssMI GATC 7 cut(s) 1092, 1222, 1648, 1666, 1705, 1867, 1945
BssT1I CCWWGG 1 cut(s) 975
Bst2UI CCWGG 2 cut(s) 297, 368
Bst4CI ACNGT 4 cut(s) 47, 1001, 1771, 2030
Bst6I CTCTTC 4 cut(s) 8, 1263, 1959, 2042
BstAFI CTTAAG 1 cut(s) 1286
BstAPI GCANNNNNTGC 1 cut(s) 1340
BstAUI TGTACA 1 cut(s) 566
BstC8I GCNNGC 2 cut(s) 818, 1248
BstDSI CCRYGG 1 cut(s) 975
BstEII GGTNACC 1 cut(s) 1182
BstF5I GGATG 5 cut(s) 253, 1225, 1741, 2194, 2407
BstFNI CGCG 3 cut(s) 333, 919, 2075
BstHHI GCGC 2 cut(s) 333, 921
BstKTI GATC 7 cut(s) 1095, 1225, 1651, 1669, 1708, 1870, 1948
BstMAI GTCTC 5 cut(s) 62, 278, 536, 990, 1892
BstMBI GATC 7 cut(s) 1092, 1222, 1648, 1666, 1705, 1867, 1945
BstMWI GCNNNNNNNGC 6 cut(s) 97, 1307, 1340, 1840, 2171, 2297
BstNI CCWGG 2 cut(s) 297, 368
BstNSI RCATGY 1 cut(s) 567
BstPI GGTNACC 1 cut(s) 1182
BstSCI CCNGG 2 cut(s) 295, 366
BstUI CGCG 3 cut(s) 333, 919, 2075
BstV1I GCAGC 4 cut(s) 30, 1180, 1237, 1939
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 1867
BstYI RGATCY 1 cut(s) 1867
Bsu36I CCTNAGG 2 cut(s) 1428, 2184
BsuRI GGCC 1 cut(s) 851
BtgI CCRYGG 1 cut(s) 975
BtgZI GCGATG 1 cut(s) 782
BtsCI GGATG 5 cut(s) 253, 1225, 1741, 2194, 2407
BtsIMutI CAGTG 1 cut(s) 1490
Cac8I GCNNGC 2 cut(s) 818, 1248
CfoI GCGC 2 cut(s) 333, 921
Cfr13I GGNCC 1 cut(s) 849
CseI GACGC 2 cut(s) 1010, 2081
Csp6I GTAC 8 cut(s) 199, 567, 599, 756, 1262, 1530, 1686, 1852
CspCI CAANNNNNGTGG 2 cut(s) 1218, 1253
CviAII CATG 4 cut(s) 397, 564, 976, 1370
CviQI GTAC 8 cut(s) 199, 567, 599, 756, 1262, 1530, 1686, 1852
DpnI GATC 7 cut(s) 1094, 1224, 1650, 1668, 1707, 1869, 1947
DpnII GATC 7 cut(s) 1092, 1222, 1648, 1666, 1705, 1867, 1945
DraI TTTAAA 1 cut(s) 1149
Eam1104I CTCTTC 4 cut(s) 8, 1263, 1959, 2042
EarI CTCTTC 4 cut(s) 8, 1263, 1959, 2042
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 991
Eco130I CCWWGG 1 cut(s) 975
Eco24I GRGCYC 3 cut(s) 358, 993, 1591
Eco31I GGTCTC 3 cut(s) 278, 536, 990
Eco32I GATATC 1 cut(s) 1497
Eco53kI GAGCTC 1 cut(s) 991
Eco57I CTGAAG 7 cut(s) 575, 587, 857, 933, 1049, 1229, 1275
Eco81I CCTNAGG 2 cut(s) 1428, 2184
Eco88I CYCGRG 1 cut(s) 1681
Eco91I GGTNACC 1 cut(s) 1182
EcoICRI GAGCTC 1 cut(s) 991
EcoO65I GGTNACC 1 cut(s) 1182
EcoRI GAATTC 1 cut(s) 1988
EcoRII CCWGG 2 cut(s) 295, 366
EcoRV GATATC 1 cut(s) 1497
EcoT14I CCWWGG 1 cut(s) 975
EcoT22I ATGCAT 1 cut(s) 1329
EcoT38I GRGCYC 3 cut(s) 358, 993, 1591
ErhI CCWWGG 1 cut(s) 975
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 4 cut(s) 400, 567, 979, 1373
FalI AAGNNNNNCTT 4 cut(s) 603, 635, 2113, 2145
FaqI GGGAC 2 cut(s) 574, 2340
FatI CATG 4 cut(s) 396, 563, 975, 1369
FauI CCCGC 1 cut(s) 168
FbaI TGATCA 2 cut(s) 1222, 1945
FblI GTMKAC 2 cut(s) 2070, 2374
Fnu4HI GCNGC 4 cut(s) 19, 1194, 1251, 1928
FokI GGATG 5 cut(s) 260, 1212, 1748, 2201, 2414
FriOI GRGCYC 3 cut(s) 358, 993, 1591
Fsp4HI GCNGC 4 cut(s) 19, 1194, 1251, 1928
FspBI CTAG 6 cut(s) 779, 1265, 1319, 1461, 2271, 2378
GlaI GCGC 2 cut(s) 332, 920
GluI GCNGC 4 cut(s) 19, 1194, 1251, 1928
HaeIII GGCC 1 cut(s) 851
HapII CCGG 2 cut(s) 242, 438
HgaI GACGC 2 cut(s) 1010, 2081
HhaI GCGC 2 cut(s) 333, 921
Hin1II CATG 4 cut(s) 400, 567, 979, 1373
Hin6I GCGC 2 cut(s) 331, 919
HinP1I GCGC 2 cut(s) 331, 919
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HpaII CCGG 2 cut(s) 242, 438
HphI GGTGA 3 cut(s) 896, 1176, 2211
Hpy166II GTNNAC 7 cut(s) 649, 758, 794, 1877, 2033, 2071, 2375
Hpy188III TCNNGA 8 cut(s) 242, 605, 683, 1427, 1484, 1603, 1874, 2310
Hpy8I GTNNAC 7 cut(s) 649, 758, 794, 1877, 2033, 2071, 2375
Hpy99I CGWCG 1 cut(s) 1026
HpyAV CCTTC 4 cut(s) 329, 832, 1571, 2223
HpyCH4III ACNGT 4 cut(s) 47, 1001, 1771, 2030
HpyCH4IV ACGT 2 cut(s) 222, 2388
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 1307, 1340, 1840, 2171, 2297
HpySE526I ACGT 2 cut(s) 222, 2388
Hsp92II CATG 4 cut(s) 400, 567, 979, 1373
HspAI GCGC 2 cut(s) 331, 919
Kpn2I TCCGGA 1 cut(s) 241
KpnI GGTACC 1 cut(s) 1533
Ksp22I TGATCA 2 cut(s) 1222, 1945
Kzo9I GATC 7 cut(s) 1092, 1222, 1648, 1666, 1705, 1867, 1945
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 7 cut(s) 85, 487, 988, 1594, 1939, 2077, 2416
Lsp1109I GCAGC 4 cut(s) 30, 1180, 1237, 1939
LweI GCATC 5 cut(s) 334, 1288, 1458, 2199, 2218
MaeI CTAG 6 cut(s) 779, 1265, 1319, 1461, 2271, 2378
MaeII ACGT 2 cut(s) 222, 2388
MaeIII GTNAC 7 cut(s) 47, 671, 1182, 1505, 2021, 2277, 2407
MalI GATC 7 cut(s) 1094, 1224, 1650, 1668, 1707, 1869, 1947
MboI GATC 7 cut(s) 1092, 1222, 1648, 1666, 1705, 1867, 1945
MflI RGATCY 1 cut(s) 1867
MhlI GDGCHC 3 cut(s) 358, 993, 1591
MluCI AATT 8 cut(s) 290, 515, 1551, 1719, 1988, 2346, 2354, 2391
MlyI GAGTC 3 cut(s) 654, 923, 1976
MmeI TCCRAC 3 cut(s) 1254, 1392, 1540
Mph1103I ATGCAT 1 cut(s) 1329
MroI TCCGGA 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 896
MslI CAYNNNNRTG 1 cut(s) 2146
MspA1I CMGCKG 5 cut(s) 524, 1119, 1126, 1503, 2225
MspCI CTTAAG 1 cut(s) 1286
MspI CCGG 2 cut(s) 242, 438
MspR9I CCNGG 2 cut(s) 297, 368
Mva1269I GAATGC 2 cut(s) 615, 2365
MvaI CCWGG 2 cut(s) 297, 368
MvnI CGCG 3 cut(s) 333, 919, 2075
MwoI GCNNNNNNNGC 6 cut(s) 97, 1307, 1340, 1840, 2171, 2297
NcoI CCATGG 1 cut(s) 975
NdeII GATC 7 cut(s) 1092, 1222, 1648, 1666, 1705, 1867, 1945
NlaIII CATG 4 cut(s) 400, 567, 979, 1373
NlaIV GGNNCC 5 cut(s) 483, 973, 1531, 1590, 1679
NmuCI GTSAC 5 cut(s) 47, 671, 1182, 2277, 2407
NsiI ATGCAT 1 cut(s) 1329
NspI RCATGY 1 cut(s) 567
PciI ACATGT 1 cut(s) 563
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 2 cut(s) 1714, 2101
PctI GAATGC 2 cut(s) 615, 2365
PdmI GAANNNNTTC 1 cut(s) 896
PfeI GAWTC 8 cut(s) 233, 381, 748, 909, 1204, 1277, 1423, 1846
PflMI CCANNNNNTGG 1 cut(s) 1702
PkrI GCNGC 4 cut(s) 20, 1195, 1252, 1929
PleI GAGTC 3 cut(s) 653, 922, 1975
PpsI GAGTC 3 cut(s) 653, 922, 1975
PscI ACATGT 1 cut(s) 563
PshBI ATTAAT 1 cut(s) 1754
PsiI TTATAA 1 cut(s) 1400
Psp124BI GAGCTC 1 cut(s) 993
Psp6I CCWGG 2 cut(s) 295, 366
PspEI GGTNACC 1 cut(s) 1182
PspGI CCWGG 2 cut(s) 295, 366
PspN4I GGNNCC 5 cut(s) 483, 973, 1531, 1590, 1679
PspPI GGNCC 1 cut(s) 849
PsuI RGATCY 1 cut(s) 1867
PvuII CAGCTG 3 cut(s) 524, 1119, 2225
RsaI GTAC 8 cut(s) 200, 568, 600, 757, 1263, 1531, 1687, 1853
RsaNI GTAC 8 cut(s) 199, 567, 599, 756, 1262, 1530, 1686, 1852
RseI CAYNNNNRTG 1 cut(s) 2146
SacI GAGCTC 1 cut(s) 993
SapI GCTCTTC 1 cut(s) 8
SatI GCNGC 4 cut(s) 19, 1194, 1251, 1928
Sau3AI GATC 7 cut(s) 1092, 1222, 1648, 1666, 1705, 1867, 1945
Sau96I GGNCC 1 cut(s) 849
ScaI AGTACT 2 cut(s) 200, 1687
SchI GAGTC 3 cut(s) 654, 923, 1976
ScrFI CCNGG 2 cut(s) 297, 368
SduI GDGCHC 3 cut(s) 358, 993, 1591
SfaNI GCATC 5 cut(s) 334, 1288, 1458, 2199, 2218
SmiMI CAYNNNNRTG 1 cut(s) 2146
SmlI CTYRAG 3 cut(s) 1286, 1611, 2001
SmoI CTYRAG 3 cut(s) 1286, 1611, 2001
Sse9I AATT 8 cut(s) 290, 515, 1551, 1719, 1988, 2346, 2354, 2391
SsiI CCGC 6 cut(s) 5, 175, 323, 1126, 1503, 2075
SspI AATATT 1 cut(s) 2196
SspMI CTAG 6 cut(s) 779, 1265, 1319, 1461, 2271, 2378
SstI GAGCTC 1 cut(s) 993
StyD4I CCNGG 2 cut(s) 295, 366
StyI CCWWGG 1 cut(s) 975
TaaI ACNGT 4 cut(s) 47, 1001, 1771, 2030
TaiI ACGT 2 cut(s) 225, 2391
TaqI TCGA 4 cut(s) 684, 912, 1717, 2138
TasI AATT 8 cut(s) 290, 515, 1551, 1719, 1988, 2346, 2354, 2391
TatI WGTACW 6 cut(s) 198, 566, 598, 755, 1261, 1685
TfiI GAWTC 8 cut(s) 233, 381, 748, 909, 1204, 1277, 1423, 1846
TscAI CASTG 1 cut(s) 1497
TseFI GTSAC 5 cut(s) 47, 671, 1182, 2277, 2407
TseI GCWGC 4 cut(s) 18, 1193, 1250, 1927
Tsp45I GTSAC 5 cut(s) 47, 671, 1182, 2277, 2407
TspDTI ATGAA 3 cut(s) 437, 1152, 1269
TspGWI ACGGA 2 cut(s) 170, 2110
TspRI CASTG 1 cut(s) 1497
Van91I CCANNNNNTGG 1 cut(s) 1702
Vha464I CTTAAG 1 cut(s) 1286
VspI ATTAAT 1 cut(s) 1754
XapI RAATTY 2 cut(s) 1988, 2346
XceI RCATGY 1 cut(s) 567
XcmI CCANNNNNNNNNTGG 2 cut(s) 1523, 1580
XmiI GTMKAC 2 cut(s) 2070, 2374
XmnI GAANNNNTTC 1 cut(s) 896
XspI CTAG 6 cut(s) 779, 1265, 1319, 1461, 2271, 2378
ZrmI AGTACT 2 cut(s) 200, 1687
Zsp2I ATGCAT 1 cut(s) 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.