Rmu_sc0003749.1_g000021

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003749.1
OG0005179
Physical Location & Seq
Forward (+)
107747 .. 111066
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1392 bp
atgtggatgcacaacgtggcaacggcggtgttgatggtgccggtagccaccggaatccttcaccgctttccgacgggtcccaaccagccggtcgttgtgggaaagttttgcagagctgtgattctaggggtgatatactcaacaagcataggagggatgagcactctcactgggacaggtgtgaatctcatattgatcggaatgtggaacagctattttccagaagcaaagccgatcacattcagcacctggttccttttcgggttcccttcggctttgttgatgttcttcgcaatgtgggcgatcctttgcttcttgtattgctcgagaagctcgggccaggctctctcttcttatttcgacaaggactatttgaagaaagagctcgagatgttgggtaagacccctcaaactattagtcatcgacagatgtttcttgtaccttcgcctcctgatagccaacctgctgtgcaatttgtcgttctgtcaaatccggacttttcctcttcgggctctagacttcaagacctgaggaacctagatagagttgttattgggttaaaatcaaatgtaggggacattcttccattgcaacagttgtacatggggttagttcaaaacccagtagcaatccgcgtagtcccagtacctaatgttgttaacgttgagatagaaaaacttgccaccaatgcaatgcttgctatgaagcttacctacatcaacgtgatatcaagcttgtgcgacaaaacaagtggtgccgatatgagcgtcgttggacaactacttggagaagattacagactggacaacaactacatgactgccacattaggaattggaggccaagaactgatgaaagatactttgtacataaagtatgcttttagtgaagctggattgtacctcgaggcaatgctgactaagaaggttgttcagttagacgtgaagaggagaaaggagtttgttaagctaatgttacggaaaatgctctcacttaggaacaaaaggattgccatattcggagtcacgtataagagctgggttctcgatctcacaagatcccctgcgattagcgtatgcaaagccctactgagagagggtgctttcctccaaatatatgaaccctcagtggatgagccaagaatctggcaactttttggtaatcctgaagcagtggacattttcaatgatctaatagaggcatgtaatggcgcacatgcagttgcatttctggtgccaatgcaccagatacaatttaattttcaaggaatattcaatgtgatgacagaccaagcaggcggtcgatctctgtttatgggctgtgatatgaatgtcaatttcgacattcttagacatatgggcttcctggtttatattagtggaaaaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

463

Amino Acids

51.62

Weight (kDa)

8.81

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 1 - 131 3.2e-11 Citrate transporter
Na_sulph_symp PF00939 11 - 133 3.5e-08 Sodium:sulfate symporter transmembrane region
UDPG_MGDP_dh PF00984 223 - 304 2.2e-15 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 338 - 428 3.4e-11 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 905
Acc36I ACCTGC 1 cut(s) 472
AccB1I GGYRCC 3 cut(s) 37, 755, 1234
AccII CGCG 1 cut(s) 636
AccIII TCCGGA 1 cut(s) 493
AciI CCGC 4 cut(s) 26, 64, 634, 1299
AclI AACGTT 1 cut(s) 663
AclWI GGATC 2 cut(s) 298, 1053
AcuI CTGAAG 1 cut(s) 1188
AdeI CACNNNGTG 1 cut(s) 16
AfaI GTAC 5 cut(s) 441, 602, 648, 869, 902
AgsI TTSAA 6 cut(s) 376, 524, 617, 1186, 1265, 1276
AjiI CACGTC 1 cut(s) 943
AjnI CCWGG 3 cut(s) 248, 339, 1365
AluBI AGCT 9 cut(s) 116, 213, 333, 385, 709, 735, 893, 970, 1038
AluI AGCT 9 cut(s) 116, 213, 333, 385, 709, 735, 893, 970, 1038
Alw21I GWGCWC 2 cut(s) 164, 387
AlwI GGATC 2 cut(s) 298, 1053
AlwNI CAGNNNCTG 1 cut(s) 249
Ama87I CYCGRG 4 cut(s) 325, 334, 386, 905
Aor13HI TCCGGA 1 cut(s) 493
AoxI GGCC 2 cut(s) 337, 841
ArsI GACNNNNNNTTYG 2 cut(s) 403, 435
AspLEI GCGC 1 cut(s) 1214
AspS9I GGNCC 2 cut(s) 77, 337
AsuHPI GGTGA 2 cut(s) 53, 142
AvaI CYCGRG 4 cut(s) 325, 334, 386, 905
AvaII GGWCC 1 cut(s) 77
AxyI CCTNAGG 1 cut(s) 530
BanI GGYRCC 3 cut(s) 37, 755, 1234
BanII GRGCYC 2 cut(s) 387, 515
BarI GAAGNNNNNNTAC 2 cut(s) 698, 730
Bbv12I GWGCWC 2 cut(s) 164, 387
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 3 cut(s) 250, 341, 1367
BfaI CTAG 3 cut(s) 125, 516, 539
BfuAI ACCTGC 1 cut(s) 472
Bme1390I CCNGG 3 cut(s) 250, 341, 1367
Bme18I GGWCC 1 cut(s) 77
BmeT110I CYCGRG 4 cut(s) 325, 334, 386, 905
BmgBI CACGTC 1 cut(s) 943
BmgT120I GGNCC 2 cut(s) 77, 337
BmiI GGNNCC 8 cut(s) 39, 78, 79, 254, 266, 536, 757, 1236
BmrFI CCNGG 3 cut(s) 250, 341, 1367
BmrI ACTGGG 3 cut(s) 180, 617, 638
BmuI ACTGGG 3 cut(s) 180, 617, 638
BsaAI YACGTR 1 cut(s) 1029
BsaWI WCCGGW 2 cut(s) 50, 493
Bse118I RCCGGY 2 cut(s) 40, 88
Bse1I ACTGG 4 cut(s) 175, 623, 644, 807
Bse21I CCTNAGG 1 cut(s) 530
Bse3DI GCAATG 4 cut(s) 300, 587, 699, 918
BseAI TCCGGA 1 cut(s) 493
BseBI CCWGG 3 cut(s) 250, 341, 1367
BseGI GGATG 3 cut(s) 12, 162, 1138
BseMI GCAATG 4 cut(s) 300, 587, 699, 918
BseMII CTCAG 3 cut(s) 521, 1082, 1140
BseNI ACTGG 4 cut(s) 175, 623, 644, 807
BseRI GAGGAG 1 cut(s) 964
BseYI CCCAGC 1 cut(s) 1038
Bsh1236I CGCG 1 cut(s) 636
Bsh1285I CGRYCG 2 cut(s) 93, 1303
BshFI GGCC 2 cut(s) 339, 843
BshNI GGYRCC 3 cut(s) 37, 755, 1234
BsiEI CGRYCG 2 cut(s) 93, 1303
BsiHKAI GWGCWC 2 cut(s) 164, 387
BsiHKCI CYCGRG 4 cut(s) 325, 334, 386, 905
BsiSI CCGG 4 cut(s) 41, 51, 89, 494
BslFI GGGAC 4 cut(s) 63, 187, 590, 626
BsmFI GGGAC 4 cut(s) 63, 187, 590, 626
BsnI GGCC 2 cut(s) 339, 843
BsoBI CYCGRG 4 cut(s) 325, 334, 386, 905
Bsp1286I GDGCHC 3 cut(s) 164, 387, 515
Bsp13I TCCGGA 1 cut(s) 493
Bsp1407I TGTACA 2 cut(s) 600, 867
Bsp143I GATC 7 cut(s) 195, 234, 303, 1048, 1058, 1189, 1304
BspACI CCGC 4 cut(s) 26, 64, 634, 1299
BspANI GGCC 2 cut(s) 339, 843
BspCNI CTCAG 3 cut(s) 522, 1083, 1139
BspEI TCCGGA 1 cut(s) 493
BspFNI CGCG 1 cut(s) 636
BspLI GGNNCC 8 cut(s) 39, 78, 79, 254, 266, 536, 757, 1236
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 2 cut(s) 298, 1053
BspT107I GGYRCC 3 cut(s) 37, 755, 1234
BsrDI GCAATG 4 cut(s) 300, 587, 699, 918
BsrFI RCCGGY 2 cut(s) 40, 88
BsrGI TGTACA 2 cut(s) 600, 867
BsrI ACTGG 4 cut(s) 175, 623, 644, 807
BssAI RCCGGY 2 cut(s) 40, 88
BssMI GATC 7 cut(s) 195, 234, 303, 1048, 1058, 1189, 1304
Bst2UI CCWGG 3 cut(s) 250, 341, 1367
Bst4CI ACNGT 1 cut(s) 597
Bst6I CTCTTC 3 cut(s) 355, 511, 941
BstAPI GCANNNNNTGC 1 cut(s) 698
BstAUI TGTACA 2 cut(s) 600, 867
BstBAI YACGTR 1 cut(s) 1029
BstC8I GCNNGC 2 cut(s) 699, 1297
BstDEI CTNAG 7 cut(s) 530, 921, 995, 1091, 1126, 1349, 1389
BstF5I GGATG 3 cut(s) 12, 162, 1138
BstFNI CGCG 1 cut(s) 636
BstHHI GCGC 1 cut(s) 1214
BstKTI GATC 7 cut(s) 198, 237, 306, 1051, 1061, 1192, 1307
BstMBI GATC 7 cut(s) 195, 234, 303, 1048, 1058, 1189, 1304
BstMCI CGRYCG 2 cut(s) 93, 1303
BstMWI GCNNNNNNNGC 4 cut(s) 299, 330, 689, 698
BstNI CCWGG 3 cut(s) 250, 341, 1367
BstNSI RCATGY 2 cut(s) 1206, 1220
BstSCI CCNGG 3 cut(s) 248, 339, 1365
BstUI CGCG 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 1058
BstXI CCANNNNNNTGG 1 cut(s) 1146
BstYI RGATCY 1 cut(s) 1058
Bsu36I CCTNAGG 1 cut(s) 530
BsuRI GGCC 2 cut(s) 339, 843
BtrI CACGTC 1 cut(s) 943
BtsCI GGATG 3 cut(s) 12, 162, 1138
BtsI GCAGTG 1 cut(s) 1179
BtsIMutI CAGTG 3 cut(s) 168, 1134, 1179
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 2 cut(s) 699, 1297
CaiI CAGNNNCTG 1 cut(s) 249
CfoI GCGC 1 cut(s) 1214
Cfr10I RCCGGY 2 cut(s) 40, 88
Cfr13I GGNCC 2 cut(s) 77, 337
CseI GACGC 1 cut(s) 757
CsiI ACCWGGT 1 cut(s) 248
Csp6I GTAC 5 cut(s) 440, 601, 647, 868, 901
CspCI CAANNNNNGTGG 2 cut(s) 733, 768
CviAII CATG 4 cut(s) 604, 817, 1203, 1217
CviQI GTAC 5 cut(s) 440, 601, 647, 868, 901
DdeI CTNAG 7 cut(s) 530, 921, 995, 1091, 1126, 1349, 1389
DpnI GATC 7 cut(s) 197, 236, 305, 1050, 1060, 1191, 1306
DpnII GATC 7 cut(s) 195, 234, 303, 1048, 1058, 1189, 1304
DraIII CACNNNGTG 1 cut(s) 16
Eam1104I CTCTTC 3 cut(s) 355, 511, 941
EarI CTCTTC 3 cut(s) 355, 511, 941
Ecl136II GAGCTC 1 cut(s) 385
Eco24I GRGCYC 2 cut(s) 387, 515
Eco32I GATATC 1 cut(s) 729
Eco47I GGWCC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 1188
Eco81I CCTNAGG 1 cut(s) 530
Eco88I CYCGRG 4 cut(s) 325, 334, 386, 905
EcoICRI GAGCTC 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 3 cut(s) 248, 339, 1365
EcoRV GATATC 1 cut(s) 729
EcoT38I GRGCYC 2 cut(s) 387, 515
FaeI CATG 4 cut(s) 607, 820, 1206, 1220
FaqI GGGAC 4 cut(s) 63, 187, 590, 626
FatI CATG 4 cut(s) 603, 816, 1202, 1216
FauNDI CATATG 1 cut(s) 1356
FokI GGATG 3 cut(s) 19, 169, 1145
FriOI GRGCYC 2 cut(s) 387, 515
FspBI CTAG 3 cut(s) 125, 516, 539
GlaI GCGC 1 cut(s) 1213
GsaI CCCAGC 1 cut(s) 1042
HaeIII GGCC 2 cut(s) 339, 843
HapII CCGG 4 cut(s) 41, 51, 89, 494
HgaI GACGC 1 cut(s) 757
HhaI GCGC 1 cut(s) 1214
Hin1II CATG 4 cut(s) 607, 820, 1206, 1220
Hin6I GCGC 1 cut(s) 1212
HinP1I GCGC 1 cut(s) 1212
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HindIII AAGCTT 2 cut(s) 707, 733
HinfI GANTC 5 cut(s) 54, 121, 184, 1023, 1143
HpaI GTTAAC 1 cut(s) 661
HpaII CCGG 4 cut(s) 41, 51, 89, 494
HphI GGTGA 2 cut(s) 53, 142
Hpy166II GTNNAC 2 cut(s) 661, 1177
Hpy188I TCNGA 3 cut(s) 72, 200, 1022
Hpy188III TCNNGA 9 cut(s) 221, 327, 388, 452, 494, 516, 524, 1046, 1166
Hpy8I GTNNAC 2 cut(s) 661, 1177
Hpy99I CGWCG 2 cut(s) 76, 773
HpyAV CCTTC 4 cut(s) 68, 279, 453, 919
HpyCH4III ACNGT 1 cut(s) 597
HpyCH4IV ACGT 5 cut(s) 15, 663, 723, 942, 1028
HpyCH4V TGCA 9 cut(s) 10, 111, 472, 592, 692, 1080, 1220, 1226, 1243
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 330, 689, 698
HpyF3I CTNAG 7 cut(s) 530, 921, 995, 1091, 1126, 1349, 1389
HpySE526I ACGT 5 cut(s) 15, 663, 723, 942, 1028
Hsp92II CATG 4 cut(s) 607, 820, 1206, 1220
HspAI GCGC 1 cut(s) 1212
KflI GGGWCCC 1 cut(s) 77
Kpn2I TCCGGA 1 cut(s) 493
KspAI GTTAAC 1 cut(s) 661
Kzo9I GATC 7 cut(s) 195, 234, 303, 1048, 1058, 1189, 1304
MabI ACCWGGT 1 cut(s) 248
MaeI CTAG 3 cut(s) 125, 516, 539
MaeII ACGT 5 cut(s) 15, 663, 723, 942, 1028
MaeIII GTNAC 2 cut(s) 975, 1024
MalI GATC 7 cut(s) 197, 236, 305, 1050, 1060, 1191, 1306
MboI GATC 7 cut(s) 195, 234, 303, 1048, 1058, 1189, 1304
MboII GAAGA 7 cut(s) 280, 342, 388, 498, 575, 803, 958
MflI RGATCY 1 cut(s) 1058
MhlI GDGCHC 3 cut(s) 164, 387, 515
MluCI AATT 5 cut(s) 473, 834, 1253, 1258, 1336
MlyI GAGTC 1 cut(s) 1032
MmeI TCCRAC 2 cut(s) 95, 754
MroI TCCGGA 1 cut(s) 493
MseI TTAA 4 cut(s) 560, 660, 966, 1257
MslI CAYNNNNRTG 1 cut(s) 722
MspI CCGG 4 cut(s) 41, 51, 89, 494
MspR9I CCNGG 3 cut(s) 250, 341, 1367
MvaI CCWGG 3 cut(s) 250, 341, 1367
MvnI CGCG 1 cut(s) 636
MwoI GCNNNNNNNGC 4 cut(s) 299, 330, 689, 698
NdeI CATATG 1 cut(s) 1356
NdeII GATC 7 cut(s) 195, 234, 303, 1048, 1058, 1189, 1304
NlaIII CATG 4 cut(s) 607, 820, 1206, 1220
NlaIV GGNNCC 8 cut(s) 39, 78, 79, 254, 266, 536, 757, 1236
NmuCI GTSAC 1 cut(s) 1024
NspI RCATGY 2 cut(s) 1206, 1220
PaeR7I CTCGAG 3 cut(s) 325, 386, 905
PfeI GAWTC 4 cut(s) 54, 121, 184, 1143
PleI GAGTC 1 cut(s) 1031
PpsI GAGTC 1 cut(s) 1031
Ppu21I YACGTR 1 cut(s) 1029
PpuMI RGGWCCY 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 387
Psp1406I AACGTT 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 3 cut(s) 248, 339, 1365
PspFI CCCAGC 1 cut(s) 1038
PspGI CCWGG 3 cut(s) 248, 339, 1365
PspN4I GGNNCC 8 cut(s) 39, 78, 79, 254, 266, 536, 757, 1236
PspPI GGNCC 2 cut(s) 77, 337
PspPPI RGGWCCY 1 cut(s) 77
PspXI VCTCGAGB 1 cut(s) 905
PstNI CAGNNNCTG 1 cut(s) 249
PsuI RGATCY 1 cut(s) 1058
RsaI GTAC 5 cut(s) 441, 602, 648, 869, 902
RsaNI GTAC 5 cut(s) 440, 601, 647, 868, 901
RseI CAYNNNNRTG 1 cut(s) 722
SacI GAGCTC 1 cut(s) 387
SaqAI TTAA 4 cut(s) 560, 660, 966, 1257
Sau3AI GATC 7 cut(s) 195, 234, 303, 1048, 1058, 1189, 1304
Sau96I GGNCC 2 cut(s) 77, 337
SchI GAGTC 1 cut(s) 1032
ScrFI CCNGG 3 cut(s) 250, 341, 1367
SduI GDGCHC 3 cut(s) 164, 387, 515
SexAI ACCWGGT 1 cut(s) 248
Sfr274I CTCGAG 3 cut(s) 325, 386, 905
SinI GGWCC 1 cut(s) 77
SlaI CTCGAG 3 cut(s) 325, 386, 905
SmiMI CAYNNNNRTG 1 cut(s) 722
SmlI CTYRAG 3 cut(s) 325, 386, 905
SmoI CTYRAG 3 cut(s) 325, 386, 905
Sse9I AATT 5 cut(s) 473, 834, 1253, 1258, 1336
SsiI CCGC 4 cut(s) 26, 64, 634, 1299
SspI AATATT 1 cut(s) 1272
SspMI CTAG 3 cut(s) 125, 516, 539
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 3 cut(s) 248, 339, 1365
TaaI ACNGT 1 cut(s) 597
TaiI ACGT 5 cut(s) 18, 666, 726, 945, 1031
TaqI TCGA 8 cut(s) 326, 360, 387, 424, 906, 1047, 1303, 1341
TasI AATT 5 cut(s) 473, 834, 1253, 1258, 1336
TatI WGTACW 2 cut(s) 600, 867
TfiI GAWTC 4 cut(s) 54, 121, 184, 1143
Tru1I TTAA 4 cut(s) 560, 660, 966, 1257
Tru9I TTAA 4 cut(s) 560, 660, 966, 1257
TscAI CASTG 3 cut(s) 175, 1134, 1179
TseFI GTSAC 1 cut(s) 1024
Tsp45I GTSAC 1 cut(s) 1024
TspDTI ATGAA 4 cut(s) 719, 869, 1134, 1343
TspGWI ACGGA 1 cut(s) 994
TspRI CASTG 3 cut(s) 175, 1134, 1179
VpaK11BI GGWCC 1 cut(s) 77
XbaI TCTAGA 1 cut(s) 515
XceI RCATGY 2 cut(s) 1206, 1220
XhoI CTCGAG 3 cut(s) 325, 386, 905
XspI CTAG 3 cut(s) 125, 516, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.