Rmu_sc0003807.1_g000003

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003807.1
OG0008811
Physical Location & Seq
Forward (+)
9400 .. 15287
5888 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2184 bp
atggggacggggacggaaaatccccagtatcttattacggggattggggagggtatgaggatggagaatgaagtcggcagtagaaacatgaacgacggaggtaataaccaagcagacgcatctccggtgagaaagaccagaagaggacgcagaggaggaggaggaggacgggaacaacaccacccttctctccaaatcgacggtgcattaaaactcaacgatcttcagtcacctttgacttgtcagcctcagactcatgaacccaccacctcgacaccgagaaaccacagaaatccgaggtcggcatccgggaatagaggtgcccatgtattcaaacctcggtttgtcaagaaatctgagttgggttcttcttcgaatggcggagtgggctcttcttcgagtggagtagtagtgggttcttcttcgaagaatgaacaagtgggtgctttgaatgatgaggtggggtctctgagtattggtgagggagaaagtgggcagcaagcgaaacaagaagaagagagagttgtggctagtgtagagaatgctgctgaggtgtctgagcgtgggaaagtggaggatgatgctgtgacaagattggaagagctgcagcgcggtgtggaagagccggaattgtcagaagagcagctgaggatcaatgatcaggctcaggaggatgagttgcttgctatggagtccatttttggagacaacgttatcatccttgaaagacaacgaggccttcgatgttttcagattcatatacacattgaagctcctggtgaaattgctgttgctactaagttgaattcatctagtggcctaaagtccacaagtagtagttctgatgacttctcatactccttcacagtccagcatcttccaccaattatgttgacatgtgcgttacccaaatcatatccaagccaccaaccaccttatttcacactatctgttcaatggttggattctattaaaatttccaatttgtgttccatgctggactcattatggatggaccaacaaggacaggaggttatataccaatgggtggaatgggtacaaagttcttctctttctcatcttgggtttaataaggaaataatgcttggtccttatggtattagagatgctggagatagacgtgcactcacaggaagtgtatccccggatgcagatattccttttcttcgaagttacaataatgatagactccatgagaacttctgcaatagtttgcaggaatgctgcatctgttttactgagtatgcaggcgctgagtttgtcaggctgccttgcaagcatttcttctgttggaaatgcatgaagacttattctgacatgcatgtcaaggaaggtaccatcaccaaattgaactgtcctgatgcaaaatgtcagggtatgatcccaccaggtttgctaaaacaattgcttggcgatgaagagtttgaacgttgggagtccttgacgttagaaaaaacactcaattcaatgtctgatattgtgtcttgtccaagatgtaaaacaccctgcatagaagatgaagatgatcatgcccaatgctcaaagtgcttctttagcttctgtacactgtgctgggagcggcgtcatgtgggtgttcaatgtatgacaccagaaatgaagctccgtatcctccaggaacgtcaaaacttcagtcagttaggcgatgagcaaaagcggagagaaaaagaaatgatcaatgagatcctcagtgtgagagaaatacttagcgatgcaaagcaatgcccggcttgcaacatggcaatatcgcgagttgaaggttgcaacaagatggtgtgtgaaaattgtgggcagtacttctgctacaactgtggaagcggaataacgggatatgaacatttcagggatgggcaatgtgaactgttcccccaagaaacaattcggaactggcaggcacagatgaatcctcgccagaatttgggtcagatacacgctgaacaggtagctgaactggttgcccaacaggtagctgtacacggacaattatgtcccagttgtggtcagtttaatgcaaagtttaacaacaacaatcatatatcttgctgggcatgccaacaccacttttgctacttatgcaaagagaccgtgaggcgaagctctcagcattatggaccgaagggttgcaaacaacacacaccactatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0030162 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033143 GO:0035257 GO:0035258 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051427 GO:0051716 GO:0060255 GO:0060765 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1990234 GO:2000058 GO:2000060 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR RWD zf-C3HC4

Protein Analysis

727

Amino Acids

81.33

Weight (kDa)

5.75

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWD PF05773 221 - 355 6.1e-24 RWD domain
zf-RING_2 PF13639 413 - 450 6.2e-06 Ring finger domain
IBR PF01485 483 - 541 3.9e-08 IBR domain, a half RING-finger domain
IBR PF01485 582 - 619 2.5e-06 IBR domain, a half RING-finger domain
IBR_1 PF22191 585 - 618 2.3e-06 IBR domain
Rcat_RNF216 PF26200 586 - 629 1.8e-08 RNF216 Rcat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1343, 2025
Acc65I GGTACC 1 cut(s) 1355
AccB1I GGYRCC 2 cut(s) 320, 1355
AccB7I CCANNNNNTGG 2 cut(s) 1048, 1957
AccBSI CCGCTC 1 cut(s) 1600
AccII CGCG 2 cut(s) 612, 1789
AciI CCGC 5 cut(s) 381, 612, 1600, 1696, 1857
AclI AACGTT 2 cut(s) 711, 1450
AclWI GGATC 3 cut(s) 659, 1396, 1717
AcsI RAATTY 3 cut(s) 805, 975, 1954
AcuI CTGAAG 2 cut(s) 209, 1654
AcyI GRCGYC 1 cut(s) 1603
AfaI GTAC 5 cut(s) 1059, 1357, 1585, 1835, 2013
AfiI CCNNNNNNNGG 3 cut(s) 1048, 1957, 2036
AflIII ACRYGT 1 cut(s) 896
AjiI CACGTC 1 cut(s) 1142
AjnI CCWGG 3 cut(s) 775, 1408, 1653
AjuI GAANNNNNNNTTGG 6 cut(s) 344, 376, 1089, 1121, 1902, 1934
AluBI AGCT 8 cut(s) 604, 646, 773, 1578, 1642, 1985, 2009, 2136
AluI AGCT 8 cut(s) 604, 646, 773, 1578, 1642, 1985, 2009, 2136
Alw21I GWGCWC 1 cut(s) 1147
Alw26I GTCTC 3 cut(s) 471, 699, 2114
Alw44I GTGCAC 1 cut(s) 1143
AlwI GGATC 3 cut(s) 659, 1396, 1717
AlwNI CAGNNNCTG 1 cut(s) 1274
AoxI GGCC 2 cut(s) 736, 817
ApaLI GTGCAC 1 cut(s) 1143
ApeKI GCWGC 7 cut(s) 496, 545, 604, 607, 643, 1245, 1288
ApoI RAATTY 3 cut(s) 805, 975, 1954
ArsI GACNNNNNNTTYG 2 cut(s) 1657, 1689
Asp700I GAANNNNTTC 1 cut(s) 1917
Asp718I GGTACC 1 cut(s) 1355
AspLEI GCGC 2 cut(s) 612, 1274
AspS9I GGNCC 3 cut(s) 1015, 1109, 2150
AsuC2I CCSGG 3 cut(s) 310, 1166, 1766
AsuHPI GGTGA 5 cut(s) 139, 222, 491, 791, 1354
AsuII TTCGAA 3 cut(s) 374, 425, 1189
AvaII GGWCC 3 cut(s) 1015, 1109, 2150
BaeGI GKGCMC 2 cut(s) 325, 1147
BanI GGYRCC 2 cut(s) 320, 1355
BanII GRGCYC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 1331
Bbv12I GWGCWC 1 cut(s) 1147
BbvCI CCTCAGC 2 cut(s) 549, 647
BbvI GCAGC 7 cut(s) 508, 532, 591, 619, 655, 1232, 1275
BccI CCATC 5 cut(s) 55, 1006, 1367, 1804, 1880
BciT130I CCWGG 3 cut(s) 777, 1410, 1655
BciVI GTATCC 2 cut(s) 1171, 1658
BclI TGATCA 3 cut(s) 658, 1546, 1713
BcnI CCSGG 3 cut(s) 310, 1166, 1766
BcoDI GTCTC 3 cut(s) 471, 699, 2114
BfaI CTAG 2 cut(s) 531, 813
BfmI CTRYAG 2 cut(s) 605, 2180
BfoI RGCGCY 1 cut(s) 1275
BfuI GTATCC 2 cut(s) 1171, 1658
BisI GCNGC 8 cut(s) 497, 546, 605, 608, 644, 1246, 1289, 1601
BlsI GCNGC 8 cut(s) 498, 547, 606, 609, 645, 1247, 1290, 1602
BmcAI AGTACT 1 cut(s) 1835
Bme1390I CCNGG 6 cut(s) 310, 777, 1166, 1410, 1655, 1766
Bme18I GGWCC 3 cut(s) 1015, 1109, 2150
BmgBI CACGTC 1 cut(s) 1142
BmgT120I GGNCC 3 cut(s) 1015, 1109, 2150
BmiI GGNNCC 2 cut(s) 322, 1357
BmrFI CCNGG 6 cut(s) 310, 777, 1166, 1410, 1655, 1766
BmrI ACTGGG 2 cut(s) 19, 2025
BmsI GCATC 9 cut(s) 128, 314, 571, 883, 1117, 1159, 1257, 1372, 1741
BmuI ACTGGG 2 cut(s) 19, 2025
BpiI GAAGAC 1 cut(s) 1331
BpmI CTGGAG 2 cut(s) 1152, 1637
Bpu10I CCTNAGC 3 cut(s) 549, 647, 666
Bpu14I TTCGAA 3 cut(s) 374, 425, 1189
BpuMI CCSGG 3 cut(s) 310, 1166, 1766
BsaHI GRCGYC 1 cut(s) 1603
BsaI GGTCTC 2 cut(s) 471, 2114
BsaJI CCNNGG 3 cut(s) 296, 338, 1164
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 6 cut(s) 396, 426, 662, 692, 696, 726
Bsc4I CCNNNNNNNGG 3 cut(s) 1048, 1957, 2036
Bse1I ACTGG 4 cut(s) 25, 1931, 1995, 2031
Bse3DI GCAATG 2 cut(s) 1766, 1898
BseBI CCWGG 3 cut(s) 777, 1410, 1655
BseDI CCNNGG 3 cut(s) 296, 338, 1164
BseGI GGATG 8 cut(s) 66, 305, 583, 679, 717, 1017, 1174, 1891
BseLI CCNNNNNNNGG 3 cut(s) 1048, 1957, 2036
BseMI GCAATG 2 cut(s) 1766, 1898
BseNI ACTGG 4 cut(s) 25, 1931, 1995, 2031
BseRI GAGGAG 4 cut(s) 168, 171, 174, 177
BseSI GKGCMC 2 cut(s) 325, 1147
BseXI GCAGC 7 cut(s) 508, 532, 591, 619, 655, 1232, 1275
BseYI CCCAGC 2 cut(s) 1593, 2082
Bsh1236I CGCG 2 cut(s) 612, 1789
BshFI GGCC 2 cut(s) 738, 819
BshNI GGYRCC 2 cut(s) 320, 1355
BsiHKAI GWGCWC 1 cut(s) 1147
BsiSI CCGG 5 cut(s) 125, 309, 626, 1166, 1766
BslFI GGGAC 3 cut(s) 19, 25, 2013
BslI CCNNNNNNNGG 3 cut(s) 1048, 1957, 2036
BsmAI GTCTC 3 cut(s) 471, 699, 2114
BsmFI GGGAC 3 cut(s) 19, 25, 2013
BsmI GAATGC 2 cut(s) 547, 1247
BsnI GGCC 2 cut(s) 738, 819
Bso31I GGTCTC 2 cut(s) 471, 2114
Bsp119I TTCGAA 3 cut(s) 374, 425, 1189
Bsp1286I GDGCHC 3 cut(s) 325, 392, 1147
Bsp1407I TGTACA 2 cut(s) 1583, 2011
Bsp143I GATC 7 cut(s) 220, 651, 658, 1401, 1546, 1713, 1722
Bsp68I TCGCGA 1 cut(s) 1789
BspACI CCGC 5 cut(s) 381, 612, 1600, 1696, 1857
BspANI GGCC 2 cut(s) 738, 819
BspFNI CGCG 2 cut(s) 612, 1789
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 322, 1357
BspMAI CTGCAG 1 cut(s) 609
BspPI GGATC 3 cut(s) 659, 1396, 1717
BspQI GCTCTTC 4 cut(s) 397, 594, 615, 633
BspT104I TTCGAA 3 cut(s) 374, 425, 1189
BspT107I GGYRCC 2 cut(s) 320, 1355
BspTNI GGTCTC 2 cut(s) 471, 2114
BsrBI CCGCTC 1 cut(s) 1600
BsrDI GCAATG 2 cut(s) 1766, 1898
BsrGI TGTACA 2 cut(s) 1583, 2011
BsrI ACTGG 4 cut(s) 25, 1931, 1995, 2031
BssECI CCNNGG 3 cut(s) 296, 338, 1164
BssMI GATC 7 cut(s) 220, 651, 658, 1401, 1546, 1713, 1722
BssNI GRCGYC 1 cut(s) 1603
Bst2UI CCWGG 3 cut(s) 777, 1410, 1655
Bst4CI ACNGT 7 cut(s) 203, 868, 1376, 1590, 1850, 1902, 2125
Bst6I CTCTTC 7 cut(s) 136, 397, 510, 594, 615, 633, 1434
BstACI GRCGYC 1 cut(s) 1603
BstAUI TGTACA 2 cut(s) 1583, 2011
BstBI TTCGAA 3 cut(s) 374, 425, 1189
BstC8I GCNNGC 7 cut(s) 501, 684, 1270, 1298, 1771, 1932, 2089
BstF5I GGATG 8 cut(s) 66, 305, 583, 679, 717, 1017, 1174, 1891
BstFNI CGCG 2 cut(s) 612, 1789
BstH2I RGCGCY 1 cut(s) 1275
BstHHI GCGC 2 cut(s) 612, 1274
BstKTI GATC 7 cut(s) 223, 654, 661, 1404, 1549, 1716, 1725
BstMAI GTCTC 3 cut(s) 471, 699, 2114
BstMBI GATC 7 cut(s) 220, 651, 658, 1401, 1546, 1713, 1722
BstMWI GCNNNNNNNGC 7 cut(s) 387, 1297, 1566, 1575, 1770, 2088, 2112
BstNI CCWGG 3 cut(s) 777, 1410, 1655
BstNSI RCATGY 4 cut(s) 900, 1342, 1346, 2091
BstSCI CCNGG 6 cut(s) 308, 775, 1164, 1408, 1653, 1764
BstSFI CTRYAG 2 cut(s) 605, 2180
BstSLI GKGCMC 2 cut(s) 325, 1147
BstUI CGCG 2 cut(s) 612, 1789
BstV1I GCAGC 7 cut(s) 508, 532, 591, 619, 655, 1232, 1275
BstV2I GAAGAC 1 cut(s) 1331
BstX2I RGATCY 1 cut(s) 1722
BstYI RGATCY 1 cut(s) 1722
BsuI GTATCC 2 cut(s) 1171, 1658
BsuRI GGCC 2 cut(s) 738, 819
BtgZI GCGATG 3 cut(s) 1449, 1698, 1764
BtrI CACGTC 1 cut(s) 1142
BtsCI GGATG 8 cut(s) 66, 305, 583, 679, 717, 1017, 1174, 1891
BtsIMutI CAGTG 2 cut(s) 1586, 1735
BtuMI TCGCGA 1 cut(s) 1789
Cac8I GCNNGC 7 cut(s) 501, 684, 1270, 1298, 1771, 1932, 2089
CaiI CAGNNNCTG 1 cut(s) 1274
CciI TCATGA 1 cut(s) 256
CfoI GCGC 2 cut(s) 612, 1274
Cfr13I GGNCC 3 cut(s) 1015, 1109, 2150
CseI GACGC 3 cut(s) 125, 156, 1592
CsiI ACCWGGT 1 cut(s) 1408
Csp6I GTAC 5 cut(s) 1058, 1356, 1584, 1834, 2012
CspCI CAANNNNNGTGG 2 cut(s) 1395, 1430
CviQI GTAC 5 cut(s) 1058, 1356, 1584, 1834, 2012
DpnI GATC 7 cut(s) 222, 653, 660, 1403, 1548, 1715, 1724
DpnII GATC 7 cut(s) 220, 651, 658, 1401, 1546, 1713, 1722
DrdI GACNNNNNNGTC 2 cut(s) 1343, 2025
DseDI GACNNNNNNGTC 2 cut(s) 1343, 2025
Eam1104I CTCTTC 7 cut(s) 136, 397, 510, 594, 615, 633, 1434
EarI CTCTTC 7 cut(s) 136, 397, 510, 594, 615, 633, 1434
EciI GGCGGA 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 738
Eco24I GRGCYC 1 cut(s) 392
Eco31I GGTCTC 2 cut(s) 471, 2114
Eco47I GGWCC 3 cut(s) 1015, 1109, 2150
Eco57I CTGAAG 2 cut(s) 209, 1654
EcoRI GAATTC 1 cut(s) 805
EcoRII CCWGG 3 cut(s) 775, 1408, 1653
EcoT22I ATGCAT 2 cut(s) 1322, 1344
EcoT38I GRGCYC 1 cut(s) 392
FalI AAGNNNNNCTT 4 cut(s) 1289, 1321, 1556, 1588
FaqI GGGAC 3 cut(s) 19, 25, 2013
FbaI TGATCA 3 cut(s) 658, 1546, 1713
Fnu4HI GCNGC 8 cut(s) 497, 546, 605, 608, 644, 1246, 1289, 1601
FokI GGATG 8 cut(s) 73, 292, 590, 686, 704, 1024, 1181, 1898
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 8 cut(s) 497, 546, 605, 608, 644, 1246, 1289, 1601
FspBI CTAG 2 cut(s) 531, 813
GlaI GCGC 2 cut(s) 611, 1273
GluI GCNGC 8 cut(s) 497, 546, 605, 608, 644, 1246, 1289, 1601
GsaI CCCAGC 2 cut(s) 1597, 2086
GsuI CTGGAG 2 cut(s) 1152, 1637
HaeII RGCGCY 1 cut(s) 1275
HaeIII GGCC 2 cut(s) 738, 819
HapII CCGG 5 cut(s) 125, 309, 626, 1166, 1766
HgaI GACGC 3 cut(s) 125, 156, 1592
HhaI GCGC 2 cut(s) 612, 1274
Hin1I GRCGYC 1 cut(s) 1603
Hin6I GCGC 2 cut(s) 610, 1272
HinP1I GCGC 2 cut(s) 610, 1272
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HinfI GANTC 8 cut(s) 253, 692, 754, 965, 1001, 1209, 1457, 1942
HpaII CCGG 5 cut(s) 125, 309, 626, 1166, 1766
HphI GGTGA 5 cut(s) 139, 222, 491, 791, 1354
Hpy166II GTNNAC 6 cut(s) 828, 894, 1145, 1586, 1898, 2014
Hpy188III TCNNGA 5 cut(s) 257, 349, 668, 1379, 1788
Hpy8I GTNNAC 6 cut(s) 828, 894, 1145, 1586, 1898, 2014
Hpy99I CGWCG 2 cut(s) 98, 203
HpyAV CCTTC 6 cut(s) 195, 749, 871, 1346, 1790, 2149
HpyCH4III ACNGT 7 cut(s) 203, 868, 1376, 1590, 1850, 1902, 2125
HpyCH4IV ACGT 5 cut(s) 711, 1141, 1450, 1466, 1660
HpyF10VI GCNNNNNNNGC 7 cut(s) 387, 1297, 1566, 1575, 1770, 2088, 2112
HpySE526I ACGT 5 cut(s) 711, 1141, 1450, 1466, 1660
Hsp92I GRCGYC 1 cut(s) 1603
HspAI GCGC 2 cut(s) 610, 1272
KpnI GGTACC 1 cut(s) 1359
Ksp22I TGATCA 3 cut(s) 658, 1546, 1713
Kzo9I GATC 7 cut(s) 220, 651, 658, 1401, 1546, 1713, 1722
LguI GCTCTTC 4 cut(s) 397, 594, 615, 633
LmnI GCTCC 3 cut(s) 778, 1597, 1647
Lsp1109I GCAGC 7 cut(s) 508, 532, 591, 619, 655, 1232, 1275
LweI GCATC 9 cut(s) 128, 314, 571, 883, 1117, 1159, 1257, 1372, 1741
MabI ACCWGGT 1 cut(s) 1408
MaeI CTAG 2 cut(s) 531, 813
MaeII ACGT 5 cut(s) 711, 1141, 1450, 1466, 1660
MaeIII GTNAC 4 cut(s) 228, 586, 903, 1193
MalI GATC 7 cut(s) 222, 653, 660, 1403, 1548, 1715, 1724
MbiI CCGCTC 1 cut(s) 1600
MboI GATC 7 cut(s) 220, 651, 658, 1401, 1546, 1713, 1722
MfeI CAATTG 1 cut(s) 1424
MflI RGATCY 1 cut(s) 1722
MhlI GDGCHC 3 cut(s) 325, 392, 1147
MlyI GAGTC 5 cut(s) 247, 701, 995, 1203, 1466
MmeI TCCRAC 2 cut(s) 942, 1292
Mph1103I ATGCAT 2 cut(s) 1322, 1344
MroXI GAANNNNTTC 1 cut(s) 1917
MseI TTAA 5 cut(s) 209, 972, 1089, 2046, 2058
MslI CAYNNNNRTG 1 cut(s) 1611
MspA1I CMGCKG 1 cut(s) 646
MspI CCGG 5 cut(s) 125, 309, 626, 1166, 1766
MspR9I CCNGG 6 cut(s) 310, 777, 1166, 1410, 1655, 1766
MunI CAATTG 1 cut(s) 1424
Mva1269I GAATGC 2 cut(s) 547, 1247
MvaI CCWGG 3 cut(s) 777, 1410, 1655
MvnI CGCG 2 cut(s) 612, 1789
MwoI GCNNNNNNNGC 7 cut(s) 387, 1297, 1566, 1575, 1770, 2088, 2112
NciI CCSGG 3 cut(s) 310, 1166, 1766
NdeII GATC 7 cut(s) 220, 651, 658, 1401, 1546, 1713, 1722
NlaIV GGNNCC 2 cut(s) 322, 1357
NmuCI GTSAC 2 cut(s) 228, 586
NruI TCGCGA 1 cut(s) 1789
NsiI ATGCAT 2 cut(s) 1322, 1344
NspI RCATGY 4 cut(s) 900, 1342, 1346, 2091
NspV TTCGAA 3 cut(s) 374, 425, 1189
PaeI GCATGC 1 cut(s) 2091
PagI TCATGA 1 cut(s) 256
PceI AGGCCT 1 cut(s) 738
PciI ACATGT 1 cut(s) 896
PciSI GCTCTTC 4 cut(s) 397, 594, 615, 633
PcsI WCGNNNNNNNCGW 1 cut(s) 739
PctI GAATGC 2 cut(s) 547, 1247
PdmI GAANNNNTTC 1 cut(s) 1917
PfeI GAWTC 3 cut(s) 754, 965, 1942
PflMI CCANNNNNTGG 2 cut(s) 1048, 1957
PfoI TCCNGGA 2 cut(s) 308, 1653
PkrI GCNGC 8 cut(s) 498, 547, 606, 609, 645, 1247, 1290, 1602
PleI GAGTC 5 cut(s) 247, 700, 995, 1203, 1465
PpsI GAGTC 5 cut(s) 247, 700, 995, 1203, 1465
PscI ACATGT 1 cut(s) 896
Psp1406I AACGTT 2 cut(s) 711, 1450
Psp6I CCWGG 3 cut(s) 775, 1408, 1653
PspFI CCCAGC 2 cut(s) 1593, 2082
PspGI CCWGG 3 cut(s) 775, 1408, 1653
PspN4I GGNNCC 2 cut(s) 322, 1357
PspPI GGNCC 3 cut(s) 1015, 1109, 2150
PstI CTGCAG 1 cut(s) 609
PstNI CAGNNNCTG 1 cut(s) 1274
PsuI RGATCY 1 cut(s) 1722
PvuII CAGCTG 1 cut(s) 646
RruI TCGCGA 1 cut(s) 1789
RsaI GTAC 5 cut(s) 1059, 1357, 1585, 1835, 2013
RsaNI GTAC 5 cut(s) 1058, 1356, 1584, 1834, 2012
RseI CAYNNNNRTG 1 cut(s) 1611
SapI GCTCTTC 4 cut(s) 397, 594, 615, 633
SaqAI TTAA 5 cut(s) 209, 972, 1089, 2046, 2058
SatI GCNGC 8 cut(s) 497, 546, 605, 608, 644, 1246, 1289, 1601
Sau3AI GATC 7 cut(s) 220, 651, 658, 1401, 1546, 1713, 1722
Sau96I GGNCC 3 cut(s) 1015, 1109, 2150
ScaI AGTACT 1 cut(s) 1835
SchI GAGTC 5 cut(s) 247, 701, 995, 1203, 1466
ScrFI CCNGG 6 cut(s) 310, 777, 1166, 1410, 1655, 1766
SduI GDGCHC 3 cut(s) 325, 392, 1147
SexAI ACCWGGT 1 cut(s) 1408
SfaNI GCATC 9 cut(s) 128, 314, 571, 883, 1117, 1159, 1257, 1372, 1741
SfcI CTRYAG 2 cut(s) 605, 2180
SfuI TTCGAA 3 cut(s) 374, 425, 1189
SinI GGWCC 3 cut(s) 1015, 1109, 2150
SmiMI CAYNNNNRTG 1 cut(s) 1611
SphI GCATGC 1 cut(s) 2091
SseBI AGGCCT 1 cut(s) 738
SsiI CCGC 5 cut(s) 381, 612, 1600, 1696, 1857
SspMI CTAG 2 cut(s) 531, 813
StuI AGGCCT 1 cut(s) 738
StyD4I CCNGG 6 cut(s) 308, 775, 1164, 1408, 1653, 1764
TaaI ACNGT 7 cut(s) 203, 868, 1376, 1590, 1850, 1902, 2125
TaiI ACGT 5 cut(s) 714, 1144, 1453, 1469, 1663
TaqI TCGA 7 cut(s) 198, 272, 374, 398, 425, 742, 1189
TaqII GACCGA 1 cut(s) 2167
TatI WGTACW 3 cut(s) 1583, 1833, 2011
TauI GCSGC 1 cut(s) 1603
TfiI GAWTC 3 cut(s) 754, 965, 1942
Tru1I TTAA 5 cut(s) 209, 972, 1089, 2046, 2058
Tru9I TTAA 5 cut(s) 209, 972, 1089, 2046, 2058
TscAI CASTG 2 cut(s) 1593, 1735
TseFI GTSAC 2 cut(s) 228, 586
TseI GCWGC 7 cut(s) 496, 545, 604, 607, 643, 1245, 1288
Tsp45I GTSAC 2 cut(s) 228, 586
TspGWI ACGGA 4 cut(s) 29, 111, 1634, 2031
TspRI CASTG 2 cut(s) 1593, 1735
Van91I CCANNNNNTGG 2 cut(s) 1048, 1957
VneI GTGCAC 1 cut(s) 1143
VpaK11BI GGWCC 3 cut(s) 1015, 1109, 2150
XapI RAATTY 3 cut(s) 805, 975, 1954
XceI RCATGY 4 cut(s) 900, 1342, 1346, 2091
XmnI GAANNNNTTC 1 cut(s) 1917
XspI CTAG 2 cut(s) 531, 813
ZrmI AGTACT 1 cut(s) 1835
Zsp2I ATGCAT 2 cut(s) 1322, 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.