Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003950.1

Orthogroup ID

OG0004898

Physical Location & Seq

Genomic Coordinates Reverse (-)

59334 .. 71938

Gene Structure 12605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2898 bp

atggcaaagagtgagcagtgctgctctactcagcttattgatggagacggatcattcaatgacactggaatcgaacagtttataaaggaggtgaaattgggagaatgtggactctcctatgcagtagtctccattatgggccctcaaagtagtggaaagagcacactactaaataatttgtttgctaccaacttcagggagatggatgcttttagaggaaggtctcagacaacaaaaggtatttggttggcaaaatgtgctggtattgagccttgtactcttgtaatggatttggagggtacagatgggagagaacgaggagaggatgatacggcattcgagaagcagagtgccctctttgcccttgctgtttcagatatagttctcatcaacatgtggtgccatgatattggccgtgagcaagccgcaaataagcctctcctaaagactgtgttccaggtgatgatgcgattgtttagtccacgtaaaacaactctgatgttcgtcatccgtgataagacaaggacacctttagagaatttagaaccggttcttagagaagacattcagaagatatgggactctgttccgaagcctgaagcccacaaggatactccactaagcgaattttttaatgttgaggttgttgctctttcaagttatgaagaaaaagaagagcaatttaaagagcaggtcgctagcttgaggcagaaattctttcattccattgcccctggtggacttgctggagatagacggggtgtagttcctgcttcagggttttcttttagtgcacagcagatatggagagtcatcaaagaaaacagagatcttgatcttcctgcccacaaggtcatggtggcaactgtacgttgtgaagagattgccaacgagaagcatgctgcttttgtaggaaatgaggagtggagtcagtttgagcaggacgttcaattgggccctattcctggctttgggaagaagctcagttcaatcattgatatgtgtctatcagggtatgatgaagaagctacatactttgatgaaggtgtcagatctgggaagcgcaagcagcttgaagaaaaattgcttcaacatgtccaacctgcattccaagctttgctgggacacttaagatctggtactctggataagttcaaggaagcatttgataaggccttggatggcgggcagggtttttctgtggctgcgcataattgcagtgaatctttcatggctcaatttgatgaaggatgtgcaggtatgcatgtccaacctgcattccaagctttgctgggacacttaagatctggtactctggataagttcaaggaagcatttgataaggccttggatggcgggcagggtttttctgtggctgcgcataattgcagtgaatctttcatggctcaatttgatgaaggatgtgcagatgctgttatccaacaagcagattgggacacatctaaagtaagagataaacttaaacgtgatatagatgctcacattgcttcagttcgtgatgctaagctatctgaaattaagaccctttatgagcatgtccaacctgcattccaagctttgctgggacacttaagatctggtactctggataagttcaaggaagcatttgataaggccttggatggcgggcagggtttttctgtggctgcgcataattgcagtgaatctttcatggctcaatttgatgaaggatgtgcagatgctgttatccaacaagcagattgggacacatctaaagtaagagataaacttaaacgtgatatagatgctcacattgcttcagttcgtgatgctaagctatctgaaattaagaccctttatgaggcaaaattgaaggaggccctgtctggacccgtggaagcgctacttgatggagctaatagtgagacttggcctgcaataaggaaacttttcaagcgcgagactgaatcagctgtctctgggttctctagtgcactttctggttttgatatggataaacaaaccaaggataaaattcttgcaagtctagaggcatattcaagaggtgtagtggaagcaaaaacaaaggaagaggctggaagggttttgatccgtatgaaggacaggtttgcaacactatttagccacgactctgattcgatgccacgtgtatggactgggaaggaagacatcagagcaattaccaagactgctcgttctgcatccctgaaattgctttctgttatggctgcaattcggttggatgatggtgatgctgataatattgagaaaactttatctcttgccttggtggatggcagaaatgctgctcccaaagataagagtatcacaacggttgacccattggcctctagcacttggcaagaggtttcatcatcaaagacattgatcacacctgtacagtgcaaatctttgtggaagcaattcaagtcagagactgagtacagtgtttctcaggctattgctgcccaggaagccaacaagcgtaataacaattggctaccacctccttgggctattcttgccttggttgtcctcggatttaatgaattcatgacactcttaagaaatcctttgtatctgctggtcatctttgttggctttttactccttaaagcactatgggtgcagctagacatctcggctgaattccgcaatggcgctcttccgggacttctctctttgtccaccaagttggtgccaactatcatgaacatgatgaagagattagcagatgaaggggcagcagctgctgcagataacaatcctcaaagaaaccctgcagtagcatcaaaaggcataagcaatggagcaaatgctagcagttccatgtcaacttctgcctcgtcgggagtgacagaatctgaatactctagtccttcaaaacaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

965

Amino Acids

106.15

Weight (kDa)

5.57

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URGCP_GTPase	PF25683	11 - 163	6e-08	URGCP-like GTPase domain
RHD3_GTPase	PF05879	46 - 281	4.6e-117	Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
Sey1_3HB	PF20428	323 - 423	1.4e-27	Sey1 three-helix bundle domain
Sey1_3HB	PF20428	422 - 518	6e-24	Sey1 three-helix bundle domain
Sey1_3HB	PF20428	516 - 914	3.1e-133	Sey1 three-helix bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13870 AT3G13870
fragaria_vesca	FvH4_6g33350 FvH4_6g33350 FvH4_6g33350 FvH4_6g33350
malus_domestica	MD09G1193400.v1.1 MD17G1174200.v1.1
prunus_persica	Prupe.3G049800_v2.0.a1
pyrus_communis	pycom09g10990 pycom17g17830
rosa_chinensis	RchiOBHm_Chr2g0143201 RchiOBHm_Chr2g0169871
rosa_laevigata	RLG00000020013
rosa_multiflora	Rmu_co8092052.1_g000001 Rmu_sc0000181.1_g000004 Rmu_sc0003950.1_g000012
rosa_roxburghii	Rroxscaffold_2G00102050 Rroxscaffold_5G00359600 Rroxscaffold_7G00190950 Rroxscaffold_7G00191100
rosa_rugosa	Rorug02G0379200
rosa_samantha	Rh1BG269400 Rh2AG432000 Rh2BG440600 Rh2CG385100 Rh2CG417900 Rh2DG450800 Rh7AG446900
rosa_wichuraiana	Rw2G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
Acc16I	TGCGCA	3 cut(s)	1209, 1380, 1671
Acc36I	ACCTGC	5 cut(s)	682, 1111, 1247, 1282, 1573
AccB1I	GGYRCC	2 cut(s)	399, 2701
AccII	CGCG	1 cut(s)	1941
AciI	CCGC	5 cut(s)	426, 1185, 1356, 1647, 2656
AclWI	GGATC	2 cut(s)	58, 2086
AcoI	YGGCCR	1 cut(s)	412
AcsI	RAATTY	6 cut(s)	538, 626, 713, 2016, 2552, 2651
AcuI	CTGAAG	5 cut(s)	178, 618, 759, 1494, 1785
AcvI	CACGTG	1 cut(s)	2150
AfaI	GTAC	8 cut(s)	277, 301, 870, 1141, 1312, 1603, 2403, 2447
AfeI	AGCGCT	1 cut(s)	1884
AfiI	CCNNNNNNNGG	6 cut(s)	195, 776, 965, 971, 1843, 2101
AflII	CTTAAG	4 cut(s)	1129, 1300, 1591, 2566
AflIII	ACRYGT	3 cut(s)	393, 1093, 2149
AgeI	ACCGGT	1 cut(s)	547
AjnI	CCWGG	4 cut(s)	456, 733, 964, 2472
Alw21I	GWGCWC	3 cut(s)	164, 796, 1978
Alw26I	GTCTC	7 cut(s)	39, 133, 228, 1901, 1937, 1963, 2432
Alw44I	GTGCAC	2 cut(s)	792, 1974
AlwI	GGATC	2 cut(s)	58, 2086
AlwNI	CAGNNNCTG	6 cut(s)	1433, 1724, 2441, 2753, 2756, 2867
Aor51HI	AGCGCT	1 cut(s)	1884
AoxI	GGCC	9 cut(s)	139, 412, 955, 1173, 1344, 1635, 1860, 1913, 2349
ApaI	GGGCCC	2 cut(s)	143, 959
ApaLI	GTGCAC	2 cut(s)	792, 1974
ApoI	RAATTY	6 cut(s)	538, 626, 713, 2016, 2552, 2651
AsiGI	ACCGGT	1 cut(s)	547
Asp700I	GAANNNNTTC	4 cut(s)	549, 564, 1931, 2426
AspLEI	GCGC	7 cut(s)	1065, 1210, 1381, 1672, 1885, 1941, 2666
AspS9I	GGNCC	6 cut(s)	139, 140, 955, 956, 1861, 1871
AsuC2I	CCSGG	1 cut(s)	2673
AsuHPI	GGTGA	3 cut(s)	103, 472, 2264
AsuNHI	GCTAGC	2 cut(s)	698, 2822
AvaII	GGWCC	1 cut(s)	1871
BaeGI	GKGCMC	5 cut(s)	143, 355, 796, 959, 1978
BanI	GGYRCC	2 cut(s)	399, 2701
BanII	GRGCYC	2 cut(s)	143, 959
BbrPI	CACGTG	1 cut(s)	2150
BbsI	GAAGAC	2 cut(s)	567, 2175
Bbv12I	GWGCWC	3 cut(s)	164, 796, 1978
BccI	CCATC	9 cut(s)	35, 196, 299, 1175, 1346, 1637, 1886, 2243, 2291
BceAI	ACGGC	2 cut(s)	348, 399
BcgI	CGANNNNNNTGC	2 cut(s)	881, 915
BciT130I	CCWGG	4 cut(s)	458, 735, 966, 2474
BciVI	GTATCC	1 cut(s)	604
BclI	TGATCA	1 cut(s)	2391
BcnI	CCSGG	1 cut(s)	2673
BcoDI	GTCTC	7 cut(s)	39, 133, 228, 1901, 1937, 1963, 2432
BfaI	CTAG	7 cut(s)	699, 1971, 2030, 2355, 2636, 2823, 2877
BfmI	CTRYAG	2 cut(s)	2757, 2784
BfoI	RGCGCY	2 cut(s)	1886, 2667
BfrI	CTTAAG	4 cut(s)	1129, 1300, 1591, 2566
BfuAI	ACCTGC	5 cut(s)	682, 1111, 1247, 1282, 1573
BfuI	GTATCC	1 cut(s)	604
BglII	AGATCT	5 cut(s)	829, 1052, 1133, 1304, 1595
BlpI	GCTNAGC	2 cut(s)	1524, 1815
Bme1390I	CCNGG	5 cut(s)	458, 735, 966, 2474, 2673
Bme18I	GGWCC	1 cut(s)	1871
BmgT120I	GGNCC	6 cut(s)	139, 140, 955, 956, 1861, 1871
BmiI	GGNNCC	5 cut(s)	141, 401, 957, 1873, 2703
BmrFI	CCNGG	5 cut(s)	458, 735, 966, 2474, 2673
BmrI	ACTGGG	1 cut(s)	2169
BmtI	GCTAGC	2 cut(s)	702, 2826
BmuI	ACTGGG	1 cut(s)	2169
BpiI	GAAGAC	2 cut(s)	567, 2175
BpmI	CTGGAG	1 cut(s)	768
Bpu1102I	GCTNAGC	2 cut(s)	1524, 1815
BpuEI	CTTGAG	1 cut(s)	724
BpuMI	CCSGG	1 cut(s)	2673
BsaAI	YACGTR	2 cut(s)	485, 2150
BsaBI	GATNNNNATC	2 cut(s)	834, 2766
BsaI	GGTCTC	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	1850, 1880
Bsc4I	CCNNNNNNNGG	6 cut(s)	195, 776, 965, 971, 1843, 2101
Bse118I	RCCGGY	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	70, 2164
Bse3DI	GCAATG	5 cut(s)	726, 1503, 1794, 2665, 2815
Bse8I	GATNNNNATC	2 cut(s)	834, 2766
BseBI	CCWGG	4 cut(s)	458, 735, 966, 2474
BseJI	GATNNNNATC	2 cut(s)	834, 2766
BseLI	CCNNNNNNNGG	6 cut(s)	195, 776, 965, 971, 1843, 2101
BseMI	GCAATG	5 cut(s)	726, 1503, 1794, 2665, 2815
BseMII	CTCAG	5 cut(s)	44, 239, 997, 2433, 2471
BseNI	ACTGG	2 cut(s)	70, 2164
BseRI	GAGGAG	2 cut(s)	333, 935
BseSI	GKGCMC	5 cut(s)	143, 355, 796, 959, 1978
BseYI	CCCAGC	3 cut(s)	1120, 1291, 1582
BsgI	GTGCAG	4 cut(s)	1275, 1446, 1737, 2651
Bsh1236I	CGCG	1 cut(s)	1941
BshFI	GGCC	9 cut(s)	141, 414, 957, 1175, 1346, 1637, 1862, 1915, 2351
BshNI	GGYRCC	2 cut(s)	399, 2701
BshTI	ACCGGT	1 cut(s)	547
BsiHKAI	GWGCWC	3 cut(s)	164, 796, 1978
BsiSI	CCGG	2 cut(s)	548, 2672
BslFI	GGGAC	7 cut(s)	593, 1137, 1308, 1469, 1599, 1760, 2688
BslI	CCNNNNNNNGG	6 cut(s)	195, 776, 965, 971, 1843, 2101
BsmAI	GTCTC	7 cut(s)	39, 133, 228, 1901, 1937, 1963, 2432
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	7 cut(s)	593, 1137, 1308, 1469, 1599, 1760, 2688
BsmI	GAATGC	4 cut(s)	335, 1106, 1277, 1568
BsnI	GGCC	9 cut(s)	141, 414, 957, 1175, 1346, 1637, 1862, 1915, 2351
Bso31I	GGTCTC	1 cut(s)	228
Bsp120I	GGGCCC	2 cut(s)	139, 955
Bsp1286I	GDGCHC	6 cut(s)	143, 164, 355, 796, 959, 1978
Bsp1407I	TGTACA	1 cut(s)	2401
Bsp143I	GATC	9 cut(s)	50, 829, 835, 1052, 1133, 1304, 1595, 2091, 2391
Bsp1720I	GCTNAGC	2 cut(s)	1524, 1815
BspACI	CCGC	5 cut(s)	426, 1185, 1356, 1647, 2656
BspANI	GGCC	9 cut(s)	141, 414, 957, 1175, 1346, 1637, 1862, 1915, 2351
BspCNI	CTCAG	5 cut(s)	43, 238, 996, 2434, 2470
BspFNI	CGCG	1 cut(s)	1941
BspHI	TCATGA	2 cut(s)	2556, 2712
BspLI	GGNNCC	5 cut(s)	141, 401, 957, 1873, 2703
BspMAI	CTGCAG	2 cut(s)	2761, 2788
BspMI	ACCTGC	5 cut(s)	682, 1111, 1247, 1282, 1573
BspOI	GCTAGC	2 cut(s)	702, 2826
BspPI	GGATC	2 cut(s)	58, 2086
BspQI	GCTCTTC	2 cut(s)	669, 2673
BspT107I	GGYRCC	2 cut(s)	399, 2701
BspTI	CTTAAG	4 cut(s)	1129, 1300, 1591, 2566
BspTNI	GGTCTC	1 cut(s)	228
BsrDI	GCAATG	5 cut(s)	726, 1503, 1794, 2665, 2815
BsrFI	RCCGGY	1 cut(s)	547
BsrGI	TGTACA	1 cut(s)	2401
BsrI	ACTGG	2 cut(s)	70, 2164
BssAI	RCCGGY	1 cut(s)	547
BssMI	GATC	9 cut(s)	50, 829, 835, 1052, 1133, 1304, 1595, 2091, 2391
BssT1I	CCWWGG	7 cut(s)	1176, 1347, 1638, 2007, 2289, 2513, 2529
Bst2UI	CCWGG	4 cut(s)	458, 735, 966, 2474
Bst4CI	ACNGT	6 cut(s)	78, 451, 868, 2338, 2406, 2450
Bst6I	CTCTTC	5 cut(s)	669, 873, 2067, 2673, 2720
BstAFI	CTTAAG	4 cut(s)	1129, 1300, 1591, 2566
BstAPI	GCANNNNNTGC	3 cut(s)	257, 2753, 2756
BstAUI	TGTACA	1 cut(s)	2401
BstBAI	YACGTR	2 cut(s)	485, 2150
BstC8I	GCNNGC	9 cut(s)	423, 700, 900, 1067, 1187, 1358, 1649, 1917, 2824
BstDEI	CTNAG	9 cut(s)	30, 225, 554, 620, 983, 1524, 1815, 2442, 2457
BstDSI	CCRYGG	1 cut(s)	1875
BstENI	CCTNNNNNAGG	2 cut(s)	774, 1841
BstFNI	CGCG	1 cut(s)	1941
BstH2I	RGCGCY	2 cut(s)	1886, 2667
BstHHI	GCGC	7 cut(s)	1065, 1210, 1381, 1672, 1885, 1941, 2666
BstKTI	GATC	9 cut(s)	53, 832, 838, 1055, 1136, 1307, 1598, 2094, 2394
BstMAI	GTCTC	7 cut(s)	39, 133, 228, 1901, 1937, 1963, 2432
BstMBI	GATC	9 cut(s)	50, 829, 835, 1052, 1133, 1304, 1595, 2091, 2391
BstNI	CCWGG	4 cut(s)	458, 735, 966, 2474
BstNSI	RCATGY	5 cut(s)	397, 902, 1097, 1268, 1559
BstSCI	CCNGG	5 cut(s)	456, 733, 964, 2472, 2671
BstSFI	CTRYAG	2 cut(s)	2757, 2784
BstSLI	GKGCMC	5 cut(s)	143, 355, 796, 959, 1978
BstUI	CGCG	1 cut(s)	1941
BstV2I	GAAGAC	2 cut(s)	567, 2175
BstX2I	RGATCY	5 cut(s)	829, 1052, 1133, 1304, 1595
BstXI	CCANNNNNNTGG	4 cut(s)	410, 2154, 2514, 2698
BstYI	RGATCY	5 cut(s)	829, 1052, 1133, 1304, 1595
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	9 cut(s)	141, 414, 957, 1175, 1346, 1637, 1862, 1915, 2351
BtgI	CCRYGG	1 cut(s)	1875
BtsI	GCAGTG	4 cut(s)	23, 1225, 1396, 1687
BtsIMutI	CAGTG	7 cut(s)	23, 63, 1225, 1396, 1687, 2411, 2455
BveI	ACCTGC	5 cut(s)	682, 1111, 1247, 1282, 1573
Cac8I	GCNNGC	9 cut(s)	423, 700, 900, 1067, 1187, 1358, 1649, 1917, 2824
CaiI	CAGNNNCTG	6 cut(s)	1433, 1724, 2441, 2753, 2756, 2867
CciI	TCATGA	2 cut(s)	2556, 2712
CfoI	GCGC	7 cut(s)	1065, 1210, 1381, 1672, 1885, 1941, 2666
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	6 cut(s)	139, 140, 955, 956, 1861, 1871
Csp6I	GTAC	8 cut(s)	276, 300, 869, 1140, 1311, 1602, 2402, 2446
CspAI	ACCGGT	1 cut(s)	547
CviQI	GTAC	8 cut(s)	276, 300, 869, 1140, 1311, 1602, 2402, 2446
DdeI	CTNAG	9 cut(s)	30, 225, 554, 620, 983, 1524, 1815, 2442, 2457
DpnI	GATC	9 cut(s)	52, 831, 837, 1054, 1135, 1306, 1597, 2093, 2393
DpnII	GATC	9 cut(s)	50, 829, 835, 1052, 1133, 1304, 1595, 2091, 2391
DraI	TTTAAA	1 cut(s)	685
EaeI	YGGCCR	1 cut(s)	412
Eam1104I	CTCTTC	5 cut(s)	669, 873, 2067, 2673, 2720
EarI	CTCTTC	5 cut(s)	669, 873, 2067, 2673, 2720
Eco130I	CCWWGG	7 cut(s)	1176, 1347, 1638, 2007, 2289, 2513, 2529
Eco147I	AGGCCT	3 cut(s)	1175, 1346, 1637
Eco24I	GRGCYC	2 cut(s)	143, 959
Eco31I	GGTCTC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	1871
Eco47III	AGCGCT	1 cut(s)	1884
Eco57I	CTGAAG	5 cut(s)	178, 618, 759, 1494, 1785
Eco72I	CACGTG	1 cut(s)	2150
EcoNI	CCTNNNNNAGG	2 cut(s)	774, 1841
EcoO109I	RGGNCCY	3 cut(s)	140, 956, 1861
EcoRI	GAATTC	2 cut(s)	2552, 2651
EcoRII	CCWGG	4 cut(s)	456, 733, 964, 2472
EcoT14I	CCWWGG	7 cut(s)	1176, 1347, 1638, 2007, 2289, 2513, 2529
EcoT22I	ATGCAT	1 cut(s)	1266
EcoT38I	GRGCYC	2 cut(s)	143, 959
ErhI	CCWWGG	7 cut(s)	1176, 1347, 1638, 2007, 2289, 2513, 2529
Esp3I	CGTCTC	1 cut(s)	39
FalI	AAGNNNNNCTT	6 cut(s)	514, 546, 1872, 1904, 2560, 2592
FaqI	GGGAC	7 cut(s)	593, 1137, 1308, 1469, 1599, 1760, 2688
FauI	CCCGC	3 cut(s)	1178, 1349, 1640
FbaI	TGATCA	1 cut(s)	2391
FriOI	GRGCYC	2 cut(s)	143, 959
FspBI	CTAG	7 cut(s)	699, 1971, 2030, 2355, 2636, 2823, 2877
FspI	TGCGCA	3 cut(s)	1209, 1380, 1671
GlaI	GCGC	7 cut(s)	1064, 1209, 1380, 1671, 1884, 1940, 2665
GsaI	CCCAGC	3 cut(s)	1124, 1295, 1586
GsuI	CTGGAG	1 cut(s)	768
HaeII	RGCGCY	2 cut(s)	1886, 2667
HaeIII	GGCC	9 cut(s)	141, 414, 957, 1175, 1346, 1637, 1862, 1915, 2351
HapII	CCGG	2 cut(s)	548, 2672
HhaI	GCGC	7 cut(s)	1065, 1210, 1381, 1672, 1885, 1941, 2666
Hin6I	GCGC	7 cut(s)	1063, 1208, 1379, 1670, 1883, 1939, 2664
HinP1I	GCGC	7 cut(s)	1063, 1208, 1379, 1670, 1883, 1939, 2664
HincII	GTYRAC	2 cut(s)	2341, 2838
HindII	GTYRAC	2 cut(s)	2341, 2838
HindIII	AAGCTT	3 cut(s)	1113, 1284, 1575
HpaII	CCGG	2 cut(s)	548, 2672
HphI	GGTGA	3 cut(s)	103, 472, 2264
Hpy166II	GTNNAC	8 cut(s)	110, 482, 740, 794, 1976, 2341, 2691, 2838
Hpy8I	GTNNAC	8 cut(s)	110, 482, 740, 794, 1976, 2341, 2691, 2838
Hpy99I	CGWCG	1 cut(s)	2854
HpyCH4III	ACNGT	6 cut(s)	78, 451, 868, 2338, 2406, 2450
HpyCH4IV	ACGT	6 cut(s)	484, 871, 945, 1486, 1777, 2149
HpyF3I	CTNAG	9 cut(s)	30, 225, 554, 620, 983, 1524, 1815, 2442, 2457
HpySE526I	ACGT	6 cut(s)	484, 871, 945, 1486, 1777, 2149
HspAI	GCGC	7 cut(s)	1063, 1208, 1379, 1670, 1883, 1939, 2664
Ksp22I	TGATCA	1 cut(s)	2391
Kzo9I	GATC	9 cut(s)	50, 829, 835, 1052, 1133, 1304, 1595, 2091, 2391
LguI	GCTCTTC	2 cut(s)	669, 2673
LmnI	GCTCC	3 cut(s)	1895, 2317, 2813
MaeI	CTAG	7 cut(s)	699, 1971, 2030, 2355, 2636, 2823, 2877
MaeII	ACGT	6 cut(s)	484, 871, 945, 1486, 1777, 2149
MaeIII	GTNAC	1 cut(s)	2857
MalI	GATC	9 cut(s)	52, 831, 837, 1054, 1135, 1306, 1597, 2093, 2393
MboI	GATC	9 cut(s)	50, 829, 835, 1052, 1133, 1304, 1595, 2091, 2391
MfeI	CAATTG	2 cut(s)	950, 2497
MflI	RGATCY	5 cut(s)	829, 1052, 1133, 1304, 1595
MhlI	GDGCHC	6 cut(s)	143, 164, 355, 796, 959, 1978
MlyI	GAGTC	5 cut(s)	105, 575, 819, 937, 2126
MmeI	TCCRAC	6 cut(s)	1123, 1294, 1465, 1585, 1756, 2223
Mph1103I	ATGCAT	1 cut(s)	1266
MroXI	GAANNNNTTC	4 cut(s)	549, 564, 1931, 2426
MslI	CAYNNNNRTG	4 cut(s)	392, 998, 2152, 2717
MspA1I	CMGCKG	2 cut(s)	1955, 2753
MspCI	CTTAAG	4 cut(s)	1129, 1300, 1591, 2566
MspI	CCGG	2 cut(s)	548, 2672
MspR9I	CCNGG	5 cut(s)	458, 735, 966, 2474, 2673
MunI	CAATTG	2 cut(s)	950, 2497
Mva1269I	GAATGC	4 cut(s)	335, 1106, 1277, 1568
MvaI	CCWGG	4 cut(s)	458, 735, 966, 2474
MvnI	CGCG	1 cut(s)	1941
NciI	CCSGG	1 cut(s)	2673
NdeII	GATC	9 cut(s)	50, 829, 835, 1052, 1133, 1304, 1595, 2091, 2391
NheI	GCTAGC	2 cut(s)	698, 2822
NlaIV	GGNNCC	5 cut(s)	141, 401, 957, 1873, 2703
NmeAIII	GCCGAG	1 cut(s)	2624
NmuCI	GTSAC	1 cut(s)	2857
NsbI	TGCGCA	3 cut(s)	1209, 1380, 1671
NsiI	ATGCAT	1 cut(s)	1266
NspI	RCATGY	5 cut(s)	397, 902, 1097, 1268, 1559
PaeI	GCATGC	1 cut(s)	902
PagI	TCATGA	2 cut(s)	2556, 2712
PceI	AGGCCT	3 cut(s)	1175, 1346, 1637
PciI	ACATGT	2 cut(s)	393, 1093
PciSI	GCTCTTC	2 cut(s)	669, 2673
PctI	GAATGC	4 cut(s)	335, 1106, 1277, 1568
PdmI	GAANNNNTTC	4 cut(s)	549, 564, 1931, 2426
PfeI	GAWTC	7 cut(s)	69, 1223, 1394, 1685, 1949, 2138, 2864
PfoI	TCCNGGA	1 cut(s)	2671
PinAI	ACCGGT	1 cut(s)	547
PleI	GAGTC	5 cut(s)	105, 575, 818, 936, 2126
PmaCI	CACGTG	1 cut(s)	2150
PmlI	CACGTG	1 cut(s)	2150
PpsI	GAGTC	5 cut(s)	105, 575, 818, 936, 2126
Ppu21I	YACGTR	2 cut(s)	485, 2150
PscI	ACATGT	2 cut(s)	393, 1093
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	4 cut(s)	456, 733, 964, 2472
PspCI	CACGTG	1 cut(s)	2150
PspFI	CCCAGC	3 cut(s)	1120, 1291, 1582
PspGI	CCWGG	4 cut(s)	456, 733, 964, 2472
PspN4I	GGNNCC	5 cut(s)	141, 401, 957, 1873, 2703
PspOMI	GGGCCC	2 cut(s)	139, 955
PspPI	GGNCC	6 cut(s)	139, 140, 955, 956, 1861, 1871
PstI	CTGCAG	2 cut(s)	2761, 2788
PstNI	CAGNNNCTG	6 cut(s)	1433, 1724, 2441, 2753, 2756, 2867
PsuI	RGATCY	5 cut(s)	829, 1052, 1133, 1304, 1595
PvuII	CAGCTG	2 cut(s)	1955, 2753
RsaI	GTAC	8 cut(s)	277, 301, 870, 1141, 1312, 1603, 2403, 2447
RsaNI	GTAC	8 cut(s)	276, 300, 869, 1140, 1311, 1602, 2402, 2446
RseI	CAYNNNNRTG	4 cut(s)	392, 998, 2152, 2717
SapI	GCTCTTC	2 cut(s)	669, 2673
Sau3AI	GATC	9 cut(s)	50, 829, 835, 1052, 1133, 1304, 1595, 2091, 2391
Sau96I	GGNCC	6 cut(s)	139, 140, 955, 956, 1861, 1871
SchI	GAGTC	5 cut(s)	105, 575, 819, 937, 2126
ScrFI	CCNGG	5 cut(s)	458, 735, 966, 2474, 2673
SduI	GDGCHC	6 cut(s)	143, 164, 355, 796, 959, 1978
SfcI	CTRYAG	2 cut(s)	2757, 2784
SinI	GGWCC	1 cut(s)	1871
SmiMI	CAYNNNNRTG	4 cut(s)	392, 998, 2152, 2717
SmlI	CTYRAG	5 cut(s)	703, 1129, 1300, 1591, 2566
SmoI	CTYRAG	5 cut(s)	703, 1129, 1300, 1591, 2566
SphI	GCATGC	1 cut(s)	902
SseBI	AGGCCT	3 cut(s)	1175, 1346, 1637
SsiI	CCGC	5 cut(s)	426, 1185, 1356, 1647, 2656
SspI	AATATT	1 cut(s)	2266
SspMI	CTAG	7 cut(s)	699, 1971, 2030, 2355, 2636, 2823, 2877
StuI	AGGCCT	3 cut(s)	1175, 1346, 1637
StyD4I	CCNGG	5 cut(s)	456, 733, 964, 2472, 2671
StyI	CCWWGG	7 cut(s)	1176, 1347, 1638, 2007, 2289, 2513, 2529
TaaI	ACNGT	6 cut(s)	78, 451, 868, 2338, 2406, 2450
TaiI	ACGT	6 cut(s)	487, 874, 948, 1489, 1780, 2152
TaqI	TCGA	3 cut(s)	72, 339, 2141
TatI	WGTACW	3 cut(s)	275, 2401, 2445
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	7 cut(s)	69, 1223, 1394, 1685, 1949, 2138, 2864
TscAI	CASTG	7 cut(s)	23, 70, 1225, 1396, 1687, 2411, 2455
TseFI	GTSAC	1 cut(s)	2857
Tsp45I	GTSAC	1 cut(s)	2857
TspGWI	ACGGA	3 cut(s)	63, 500, 2084
TspRI	CASTG	7 cut(s)	23, 70, 1225, 1396, 1687, 2411, 2455
Vha464I	CTTAAG	4 cut(s)	1129, 1300, 1591, 2566
VneI	GTGCAC	2 cut(s)	792, 1974
VpaK11BI	GGWCC	1 cut(s)	1871
XagI	CCTNNNNNAGG	2 cut(s)	774, 1841
XapI	RAATTY	6 cut(s)	538, 626, 713, 2016, 2552, 2651
XbaI	TCTAGA	1 cut(s)	2029
XceI	RCATGY	5 cut(s)	397, 902, 1097, 1268, 1559
XmnI	GAANNNNTTC	4 cut(s)	549, 564, 1931, 2426
XspI	CTAG	7 cut(s)	699, 1971, 2030, 2355, 2636, 2823, 2877
Zsp2I	ATGCAT	1 cut(s)	1266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.