Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004200.1

Orthogroup ID

OG0003005

Physical Location & Seq

Genomic Coordinates Reverse (-)

36672 .. 40228

Gene Structure 3557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgtttaagcttcctactcttcggtcccatgaaaccatatggcagcctgtaattcatgccagcgtgagggccaaaaaggagcgacttggtttccgtacaaaggtgcctcgcagtgtaaacatggagaaattgcggaatggttatttgtttcctgagatttcaaagcttgagctccaacatgttgagaagtacccagatgccaaattgataagccttggaattggtgatacaacagaaccgctaccagaaatcataacctcaaccatggctaatgcttatatagactcaagtgtcataataggtcaggcaggtgagatcaaagatgaagctgggaggtataggagcattgaatacatgaactgcagccctcacaataatttttttccgaacttatcaactacttcaagagcagatattatattcttttgctctccaaacaatccaactggttatgcagcaacaaggaagcaattagagcaacttgtagagtttgcaaggcagaatggatcaattatcatatatgactctgcctattcatcttatatcagagatgatagtcctcggtcaatatacgatattcctggtgccagagaggttgctattgaaatttcatcattctccaaatttgctgggttcactggcatccgtctaggttggacggttgtccctgaggagctcttatactccaatggttttcctgttatatatgacttcaatcgtattgtgtgcacttgctttaatggagcatctaatattgctcaagctggtggattggcatgtctttctccagtaggtttccaggctgtgcattctatggttgactactacatggagaatgcaaagatattggtcgagacatttgcttctcttggttaccaagtatatggtggtgcaaatgctccctacatttgggtgcattttcctggctcaagttcttgggatgtattcactgagattcttgaaaaaacacacatccttacagttccaggttctggatttggtccagctggtgaagggtgtctcagaattagttcttttggccacagagagtgtatccgagaggcctcgcgtaggctcagaaccctatttcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008144 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010150 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0019842 GO:0023052 GO:0030170 GO:0032501 GO:0032502 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0048037 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070279 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0090693 GO:0097159 GO:0098542 GO:0099402 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

364

Amino Acids

40.62

Weight (kDa)

6.72

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	136 - 356	7.6e-31	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13810
fragaria_vesca	FvH4_5g30860 FvH4_5g30860 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260 FvH4_5g38260
malus_domestica	MD08G1221500.v1.1 MD15G1412200.v1.1 MD15G1412400.v1.1
prunus_persica	Prupe.1G509100_v2.0.a1 Prupe.1G509100_v2.0.a1 Prupe.1G509500_v2.0.a1 Prupe.1G558600_v2.0.a1
pyrus_communis	pycom08g19210 pycom15g36710
rosa_chinensis	RchiOBHm_Chr7g0226031 RchiOBHm_Chr7g0240251
rosa_laevigata	RLG00000000691 RLG00000001773
rosa_multiflora	Rmu_sc0002676.1_g000021 Rmu_sc0004200.1_g000015
rosa_roxburghii	Rroxscaffold_3G00220280 Rroxscaffold_3G00233310
rosa_rugosa	Rorug07G0234200 Rorug07G0234300 Rorug07G0334400
rosa_samantha	Rh7AG369100 Rh7AG488400 Rh7BG368200 Rh7BG461300 Rh7CG387600 Rh7CG504500 Rh7DG379300 Rh7DG472600
rosa_wichuraiana	Rw0G020940 Rw7G040880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	2 cut(s)	103, 584
AccB7I	CCANNNNNTGG	1 cut(s)	992
AccII	CGCG	1 cut(s)	1069
AciI	CCGC	2 cut(s)	133, 239
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	1039
AcsI	RAATTY	2 cut(s)	606, 623
AfaI	GTAC	2 cut(s)	97, 191
AfiI	CCNNNNNNNGG	5 cut(s)	66, 100, 909, 992, 1071
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	7 cut(s)	162, 350, 405, 605, 715, 962, 1091
AjnI	CCWGG	4 cut(s)	580, 798, 922, 985
AluBI	AGCT	7 cut(s)	10, 166, 172, 329, 676, 764, 1007
AluI	AGCT	7 cut(s)	10, 166, 172, 329, 676, 764, 1007
Alw21I	GWGCWC	3 cut(s)	174, 678, 731
Alw26I	GTCTC	2 cut(s)	848, 1025
Alw44I	GTGCAC	1 cut(s)	727
AlwI	GGATC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	992
AoxI	GGCC	3 cut(s)	69, 1039, 1062
ApaLI	GTGCAC	1 cut(s)	727
ApeKI	GCWGC	3 cut(s)	43, 363, 455
ApoI	RAATTY	2 cut(s)	606, 623
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspS9I	GGNCC	3 cut(s)	24, 69, 1001
AsuHPI	GGTGA	3 cut(s)	236, 323, 1022
AvaII	GGWCC	2 cut(s)	24, 1001
AxyI	CCTNAGG	1 cut(s)	669
BaeGI	GKGCMC	1 cut(s)	731
BalI	TGGCCA	1 cut(s)	1041
BanI	GGYRCC	2 cut(s)	103, 584
BanII	GRGCYC	2 cut(s)	174, 678
Bbv12I	GWGCWC	3 cut(s)	174, 678, 731
BbvI	GCAGC	3 cut(s)	55, 375, 467
BcgI	CGANNNNNNTGC	2 cut(s)	842, 876
BciT130I	CCWGG	4 cut(s)	582, 800, 924, 987
BciVI	GTATCC	1 cut(s)	1064
BcoDI	GTCTC	2 cut(s)	848, 1025
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	299
BfuI	GTATCC	1 cut(s)	1064
BisI	GCNGC	3 cut(s)	44, 364, 456
BlsI	GCNGC	3 cut(s)	45, 365, 457
Bme1390I	CCNGG	4 cut(s)	582, 800, 924, 987
Bme18I	GGWCC	2 cut(s)	24, 1001
BmgT120I	GGNCC	3 cut(s)	24, 69, 1001
BmiI	GGNNCC	3 cut(s)	26, 105, 586
BmrFI	CCNGG	4 cut(s)	582, 800, 924, 987
BmsI	GCATC	3 cut(s)	187, 651, 755
BoxI	GACNNNNGTC	1 cut(s)	662
BpmI	CTGGAG	1 cut(s)	771
BpuEI	CTTGAG	4 cut(s)	188, 271, 744, 913
BsaJI	CCNNGG	3 cut(s)	214, 264, 560
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 100, 909, 992, 1071
Bse1I	ACTGG	3 cut(s)	451, 643, 788
Bse21I	CCTNAGG	1 cut(s)	669
BseBI	CCWGG	4 cut(s)	582, 800, 924, 987
BseDI	CCNNGG	3 cut(s)	214, 264, 560
BseGI	GGATG	3 cut(s)	642, 946, 972
BseLI	CCNNNNNNNGG	5 cut(s)	66, 100, 909, 992, 1071
BseMII	CTCAG	5 cut(s)	144, 660, 942, 1036, 1090
BseNI	ACTGG	3 cut(s)	451, 643, 788
BseRI	GAGGAG	1 cut(s)	686
BseSI	GKGCMC	1 cut(s)	731
BseXI	GCAGC	3 cut(s)	55, 375, 467
BseYI	CCCAGC	2 cut(s)	329, 629
Bsh1236I	CGCG	1 cut(s)	1069
BshFI	GGCC	3 cut(s)	71, 1041, 1064
BshNI	GGYRCC	2 cut(s)	103, 584
BsiHKAI	GWGCWC	3 cut(s)	174, 678, 731
BslFI	GGGAC	2 cut(s)	10, 650
BslI	CCNNNNNNNGG	5 cut(s)	66, 100, 909, 992, 1071
BsmAI	GTCTC	2 cut(s)	848, 1025
BsmFI	GGGAC	2 cut(s)	10, 650
BsmI	GAATGC	2 cut(s)	808, 841
BsnI	GGCC	3 cut(s)	71, 1041, 1064
Bsp1286I	GDGCHC	3 cut(s)	174, 678, 731
Bsp143I	GATC	2 cut(s)	315, 506
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	2 cut(s)	133, 239
BspANI	GGCC	3 cut(s)	71, 1041, 1064
BspCNI	CTCAG	5 cut(s)	145, 661, 943, 1035, 1089
BspFNI	CGCG	1 cut(s)	1069
BspLI	GGNNCC	3 cut(s)	26, 105, 586
BspMAI	CTGCAG	1 cut(s)	365
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	514
BspT107I	GGYRCC	2 cut(s)	103, 584
BsrI	ACTGG	3 cut(s)	451, 643, 788
BssECI	CCNNGG	3 cut(s)	214, 264, 560
BssMI	GATC	2 cut(s)	315, 506
BssT1I	CCWWGG	2 cut(s)	214, 264
Bst2UI	CCWGG	4 cut(s)	582, 800, 924, 987
Bst4CI	ACNGT	2 cut(s)	661, 982
Bst6I	CTCTTC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	5 cut(s)	153, 669, 951, 1022, 1076
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	872
BstENI	CCTNNNNNAGG	1 cut(s)	1069
BstF5I	GGATG	3 cut(s)	642, 946, 972
BstFNI	CGCG	1 cut(s)	1069
BstKTI	GATC	2 cut(s)	318, 509
BstMAI	GTCTC	2 cut(s)	848, 1025
BstMBI	GATC	2 cut(s)	315, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	4 cut(s)	582, 800, 924, 987
BstNSI	RCATGY	2 cut(s)	182, 780
BstPAI	GACNNNNGTC	1 cut(s)	662
BstPI	GGTNACC	1 cut(s)	872
BstSCI	CCNGG	4 cut(s)	580, 798, 922, 985
BstSFI	CTRYAG	1 cut(s)	361
BstSLI	GKGCMC	1 cut(s)	731
BstUI	CGCG	1 cut(s)	1069
BstV1I	GCAGC	3 cut(s)	55, 375, 467
BstXI	CCANNNNNNTGG	1 cut(s)	884
Bsu36I	CCTNAGG	1 cut(s)	669
BsuI	GTATCC	1 cut(s)	1064
BsuRI	GGCC	3 cut(s)	71, 1041, 1064
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	3 cut(s)	642, 946, 972
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	3 cut(s)	118, 636, 948
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	992
Cfr13I	GGNCC	3 cut(s)	24, 69, 1001
Csp6I	GTAC	2 cut(s)	96, 190
CviAII	CATG	8 cut(s)	29, 56, 121, 179, 265, 355, 777, 829
CviQI	GTAC	2 cut(s)	96, 190
DdeI	CTNAG	5 cut(s)	153, 669, 951, 1022, 1076
DpnI	GATC	2 cut(s)	317, 508
DpnII	GATC	2 cut(s)	315, 506
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	1039
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Ecl136II	GAGCTC	2 cut(s)	172, 676
Eco130I	CCWWGG	2 cut(s)	214, 264
Eco147I	AGGCCT	1 cut(s)	1064
Eco24I	GRGCYC	2 cut(s)	174, 678
Eco47I	GGWCC	2 cut(s)	24, 1001
Eco53kI	GAGCTC	2 cut(s)	172, 676
Eco81I	CCTNAGG	1 cut(s)	669
Eco91I	GGTNACC	1 cut(s)	872
EcoICRI	GAGCTC	2 cut(s)	172, 676
EcoNI	CCTNNNNNAGG	1 cut(s)	1069
EcoO65I	GGTNACC	1 cut(s)	872
EcoRII	CCWGG	4 cut(s)	580, 798, 922, 985
EcoT14I	CCWWGG	2 cut(s)	214, 264
EcoT38I	GRGCYC	2 cut(s)	174, 678
ErhI	CCWWGG	2 cut(s)	214, 264
FaeI	CATG	8 cut(s)	32, 59, 124, 182, 268, 358, 780, 832
FaqI	GGGAC	2 cut(s)	10, 650
FatI	CATG	8 cut(s)	28, 55, 120, 178, 264, 354, 776, 828
FauNDI	CATATG	1 cut(s)	38
Fnu4HI	GCNGC	3 cut(s)	44, 364, 456
FokI	GGATG	3 cut(s)	629, 953, 959
FriOI	GRGCYC	2 cut(s)	174, 678
Fsp4HI	GCNGC	3 cut(s)	44, 364, 456
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	3 cut(s)	44, 364, 456
GsaI	CCCAGC	2 cut(s)	333, 633
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	3 cut(s)	71, 1041, 1064
Hin1II	CATG	8 cut(s)	32, 59, 124, 182, 268, 358, 780, 832
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	2 cut(s)	8, 164
HinfI	GANTC	3 cut(s)	284, 524, 955
HphI	GGTGA	3 cut(s)	236, 323, 1022
Hpy166II	GTNNAC	4 cut(s)	118, 636, 729, 820
Hpy188I	TCNGA	5 cut(s)	387, 548, 1025, 1058, 1079
Hpy188III	TCNNGA	5 cut(s)	152, 405, 853, 959, 993
Hpy8I	GTNNAC	4 cut(s)	118, 636, 729, 820
HpyAV	CCTTC	1 cut(s)	1007
HpyCH4III	ACNGT	2 cut(s)	661, 982
HpyCH4V	TGCA	8 cut(s)	363, 455, 494, 729, 808, 839, 893, 916
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	5 cut(s)	153, 669, 951, 1022, 1076
Hsp92II	CATG	8 cut(s)	32, 59, 124, 182, 268, 358, 780, 832
Kzo9I	GATC	2 cut(s)	315, 506
LmnI	GCTCC	6 cut(s)	79, 177, 342, 673, 743, 904
Lsp1109I	GCAGC	3 cut(s)	55, 375, 467
LweI	GCATC	3 cut(s)	187, 651, 755
MaeI	CTAG	1 cut(s)	650
MaeIII	GTNAC	1 cut(s)	872
MalI	GATC	2 cut(s)	317, 508
MboI	GATC	2 cut(s)	315, 506
MboII	GAAGA	1 cut(s)	11
MhlI	GDGCHC	3 cut(s)	174, 678, 731
MlsI	TGGCCA	1 cut(s)	1041
MluNI	TGGCCA	1 cut(s)	1041
MlyI	GAGTC	2 cut(s)	278, 518
MmeI	TCCRAC	3 cut(s)	199, 467, 635
Mox20I	TGGCCA	1 cut(s)	1041
MroXI	GAANNNNTTC	1 cut(s)	1030
MscI	TGGCCA	1 cut(s)	1041
MseI	TTAA	2 cut(s)	6, 738
MslI	CAYNNNNRTG	1 cut(s)	911
Msp20I	TGGCCA	1 cut(s)	1041
MspA1I	CMGCKG	1 cut(s)	1007
MspR9I	CCNGG	4 cut(s)	582, 800, 924, 987
Mva1269I	GAATGC	2 cut(s)	808, 841
MvaI	CCWGG	4 cut(s)	582, 800, 924, 987
MvnI	CGCG	1 cut(s)	1069
MwoI	GCNNNNNNNGC	1 cut(s)	475
NcoI	CCATGG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	2 cut(s)	315, 506
NlaIII	CATG	8 cut(s)	32, 59, 124, 182, 268, 358, 780, 832
NlaIV	GGNNCC	3 cut(s)	26, 105, 586
NspI	RCATGY	2 cut(s)	182, 780
PaqCI	CACCTGC	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	1064
PciI	ACATGT	1 cut(s)	178
PctI	GAATGC	2 cut(s)	808, 841
PdmI	GAANNNNTTC	1 cut(s)	1030
PfeI	GAWTC	1 cut(s)	955
PflMI	CCANNNNNTGG	1 cut(s)	992
PkrI	GCNGC	3 cut(s)	45, 365, 457
PleI	GAGTC	2 cut(s)	278, 518
PpsI	GAGTC	2 cut(s)	278, 518
PscI	ACATGT	1 cut(s)	178
PshAI	GACNNNNGTC	1 cut(s)	662
Psp124BI	GAGCTC	2 cut(s)	174, 678
Psp6I	CCWGG	4 cut(s)	580, 798, 922, 985
PspEI	GGTNACC	1 cut(s)	872
PspFI	CCCAGC	2 cut(s)	329, 629
PspGI	CCWGG	4 cut(s)	580, 798, 922, 985
PspN4I	GGNNCC	3 cut(s)	26, 105, 586
PspPI	GGNCC	3 cut(s)	24, 69, 1001
PstI	CTGCAG	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	992
PvuII	CAGCTG	1 cut(s)	1007
RsaI	GTAC	2 cut(s)	97, 191
RsaNI	GTAC	2 cut(s)	96, 190
RseI	CAYNNNNRTG	1 cut(s)	911
SacI	GAGCTC	2 cut(s)	174, 678
SaqAI	TTAA	2 cut(s)	6, 738
SatI	GCNGC	3 cut(s)	44, 364, 456
Sau3AI	GATC	2 cut(s)	315, 506
Sau96I	GGNCC	3 cut(s)	24, 69, 1001
SchI	GAGTC	2 cut(s)	278, 518
ScrFI	CCNGG	4 cut(s)	582, 800, 924, 987
SduI	GDGCHC	3 cut(s)	174, 678, 731
SfaNI	GCATC	3 cut(s)	187, 651, 755
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	2 cut(s)	24, 1001
SmiMI	CAYNNNNRTG	1 cut(s)	911
SmlI	CTYRAG	4 cut(s)	167, 286, 759, 928
SmoI	CTYRAG	4 cut(s)	167, 286, 759, 928
SseBI	AGGCCT	1 cut(s)	1064
SsiI	CCGC	2 cut(s)	133, 239
SspI	AATATT	1 cut(s)	754
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	2 cut(s)	174, 678
StuI	AGGCCT	1 cut(s)	1064
StyD4I	CCNGG	4 cut(s)	580, 798, 922, 985
StyI	CCWWGG	2 cut(s)	214, 264
TaaI	ACNGT	2 cut(s)	661, 982
TaqI	TCGA	1 cut(s)	852
TaqII	GACCGA	2 cut(s)	12, 552
TfiI	GAWTC	1 cut(s)	955
Tru1I	TTAA	2 cut(s)	6, 738
Tru9I	TTAA	2 cut(s)	6, 738
TscAI	CASTG	3 cut(s)	118, 643, 955
TseI	GCWGC	3 cut(s)	43, 363, 455
TspDTI	ATGAA	6 cut(s)	44, 45, 339, 371, 525, 600
TspGWI	ACGGA	2 cut(s)	83, 635
TspRI	CASTG	3 cut(s)	118, 643, 955
Van91I	CCANNNNNTGG	1 cut(s)	992
VneI	GTGCAC	1 cut(s)	727
VpaK11BI	GGWCC	2 cut(s)	24, 1001
XagI	CCTNNNNNAGG	1 cut(s)	1069
XapI	RAATTY	2 cut(s)	606, 623
XceI	RCATGY	2 cut(s)	182, 780
XcmI	CCANNNNNNNNNTGG	1 cut(s)	884
XmnI	GAANNNNTTC	1 cut(s)	1030
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.